Strain Fitness in Sphingobium sp. HT1-2 around GFF4251

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,268,446	-				-1.5
4,268,452	+				+1.1
4,268,454	+				-1.8
4,268,485	+				+0.3
4,268,493	-				-1.5
4,268,494	+				+0.2
4,268,494	-				-0.1
4,268,502	-				+0.0
4,268,502	-				-2.8
4,268,550	-		GFF4249	0.12	-1.6
4,268,550	-		GFF4249	0.12	+1.2
4,268,563	+		GFF4249	0.16	+0.4
4,268,563	+		GFF4249	0.16	-0.5
4,268,571	-		GFF4249	0.19	-0.4
4,268,571	-		GFF4249	0.19	-0.0
4,268,572	-		GFF4249	0.19	+0.3
4,268,598	+		GFF4249	0.27	-0.9
4,268,644	+		GFF4249	0.42	-0.8
4,268,654	+		GFF4249	0.45	+0.1
4,268,654	+		GFF4249	0.45	+0.2
4,268,654	+		GFF4249	0.45	-1.6
4,268,654	+		GFF4249	0.45	-0.4
4,268,654	+		GFF4249	0.45	-0.0
4,268,662	-		GFF4249	0.48	-0.5
4,268,662	-		GFF4249	0.48	+0.5
4,268,662	-		GFF4249	0.48	+1.1
4,268,662	-		GFF4249	0.48	+0.6
4,268,736	-		GFF4249	0.71	-0.9
4,268,757	+		GFF4249	0.78	-1.9
4,268,765	-		GFF4249	0.80	+0.2
4,268,778	+		GFF4249	0.84	+0.3
4,268,778	+		GFF4249	0.84	+0.1
4,268,778	+		GFF4249	0.84	+0.3
4,268,778	+		GFF4249	0.84	+0.4
4,268,778	+		GFF4249	0.84	-0.2
4,268,778	+		GFF4249	0.84	+0.4
4,268,779	-		GFF4249	0.85	-0.5
4,268,779	-		GFF4249	0.85	-0.7
4,268,779	-		GFF4249	0.85	+0.4
4,268,786	-		GFF4249	0.87	+0.5
4,268,786	-		GFF4249	0.87	-0.7
4,268,786	-		GFF4249	0.87	-1.6
4,268,786	-		GFF4249	0.87	-0.9
4,268,786	-		GFF4249	0.87	-1.1
4,268,811	+				-0.3
4,268,811	+				+0.1
4,268,841	+				+0.4
4,268,849	-				+1.7
4,268,864	+				-2.2
4,268,871	-				-0.3
4,268,886	+				-0.1
4,268,887	+				-0.1
4,268,895	-				+0.6
4,268,907	+				+0.2
4,268,907	-				+0.1
4,268,912	+				+0.2
4,268,912	+				-0.2
4,268,922	+				+1.8
4,268,951	-		GFF4250	0.12	-1.5
4,268,951	-		GFF4250	0.12	-1.6
4,268,951	-		GFF4250	0.12	-1.1
4,268,960	+		GFF4250	0.14	-0.0
4,268,968	-		GFF4250	0.15	-0.9
4,268,994	+		GFF4250	0.20	-0.7
4,269,002	-		GFF4250	0.22	-0.6
4,269,002	-		GFF4250	0.22	+0.5
4,269,002	-		GFF4250	0.22	-1.7
4,269,007	-		GFF4250	0.23	+0.9
4,269,017	-		GFF4250	0.25	-0.7
4,269,018	+		GFF4250	0.25	-0.6
4,269,026	-		GFF4250	0.27	-0.7
4,269,047	+		GFF4250	0.31	-1.7
4,269,057	+		GFF4250	0.33	-2.2
4,269,091	-		GFF4250	0.39	+0.9
4,269,102	-		GFF4250	0.42	+0.2
4,269,114	+		GFF4250	0.44	-0.9
4,269,126	+		GFF4250	0.46	-1.3
4,269,127	+		GFF4250	0.46	-0.3
4,269,127	+		GFF4250	0.46	-0.4
4,269,132	+		GFF4250	0.47	+0.5
4,269,135	-		GFF4250	0.48	+0.5
4,269,137	+		GFF4250	0.48	+0.4
4,269,137	+		GFF4250	0.48	-0.6
4,269,137	+		GFF4250	0.48	-0.5
4,269,137	+		GFF4250	0.48	-0.2
4,269,137	+		GFF4250	0.48	+0.1
4,269,137	+		GFF4250	0.48	-1.9
4,269,145	-		GFF4250	0.50	+0.1
4,269,145	-		GFF4250	0.50	-0.3
4,269,147	+		GFF4250	0.50	+0.3
4,269,147	+		GFF4250	0.50	-2.2
4,269,147	+		GFF4250	0.50	-0.8
4,269,147	+		GFF4250	0.50	-0.7
4,269,147	+		GFF4250	0.50	+0.5
4,269,147	+		GFF4250	0.50	+0.9
4,269,147	+		GFF4250	0.50	+0.2
4,269,147	+		GFF4250	0.50	-2.5
4,269,155	-		GFF4250	0.52	+0.1
4,269,155	-		GFF4250	0.52	+0.8
4,269,155	-		GFF4250	0.52	-1.0
4,269,156	-		GFF4250	0.52	+0.4
4,269,160	-		GFF4250	0.53	+0.1
4,269,165	-		GFF4250	0.54	-0.6
4,269,193	+		GFF4250	0.59	+0.2
4,269,235	+		GFF4250	0.68	-1.9
4,269,240	-		GFF4250	0.69	+0.1
4,269,252	+		GFF4250	0.71	+0.7
4,269,258	-		GFF4250	0.72	-1.2
4,269,258	-		GFF4250	0.72	+0.0
4,269,258	-		GFF4250	0.72	-0.4
4,269,262	+		GFF4250	0.73	+0.6
4,269,264	+		GFF4250	0.73	-0.9
4,269,272	-		GFF4250	0.75	-0.5
4,269,272	-		GFF4250	0.75	-1.1
4,269,277	-		GFF4250	0.76	-0.8
4,269,316	+		GFF4250	0.84	+0.3
4,269,319	+		GFF4250	0.84	+0.5
4,269,324	+		GFF4250	0.85	+1.0
4,269,327	-		GFF4250	0.86	+1.2
4,269,329	+		GFF4250	0.86	-0.8
4,269,373	+				-0.5
4,269,381	-				-2.0
4,269,381	-				-0.1
4,269,381	-				-2.1
4,269,386	-				+0.9
4,269,406	-				-0.7
4,269,408	+				+0.0
4,269,416	-				+0.6
4,269,426	+				-2.2
4,269,426	+				-0.1
4,269,426	+				+0.5
4,269,426	+				-0.2
4,269,427	-				+0.2
4,269,434	-				+0.2
4,269,438	+				+0.3
4,269,439	-				-0.9
4,269,444	+				-0.6
4,269,452	-				-0.4
4,269,452	-				+0.0
4,269,452	-				+0.0
4,269,453	-				+1.4
4,269,468	-				+0.4
4,269,469	+				-2.0
4,269,469	+				-1.8
4,269,477	-				-0.5
4,269,493	+				-1.6
4,269,506	+				+0.9
4,269,511	+		GFF4251	0.11	+0.0
4,269,511	+		GFF4251	0.11	-1.4
4,269,511	+		GFF4251	0.11	+0.6
4,269,514	-		GFF4251	0.11	-0.1
4,269,516	+		GFF4251	0.11	-0.8
4,269,519	+		GFF4251	0.12	+0.1
4,269,519	-		GFF4251	0.12	-0.9
4,269,519	-		GFF4251	0.12	+0.9
4,269,564	+		GFF4251	0.18	+0.1
4,269,583	-		GFF4251	0.21	-0.1
4,269,598	+		GFF4251	0.23	-0.0
4,269,598	+		GFF4251	0.23	-2.8
4,269,606	-		GFF4251	0.24	+0.0
4,269,606	-		GFF4251	0.24	+1.0
4,269,606	-		GFF4251	0.24	+0.2
4,269,606	-		GFF4251	0.24	+0.7
4,269,606	-		GFF4251	0.24	-0.2
4,269,606	-		GFF4251	0.24	+1.0
4,269,624	+		GFF4251	0.27	+1.1
4,269,632	-		GFF4251	0.28	-1.0
4,269,658	+		GFF4251	0.31	+0.0
4,269,663	+		GFF4251	0.32	-0.1
4,269,666	-		GFF4251	0.33	+1.0
4,269,667	+		GFF4251	0.33	-2.5
4,269,671	-		GFF4251	0.33	+0.6
4,269,675	-		GFF4251	0.34	+0.2
4,269,676	-		GFF4251	0.34	+0.5
4,269,682	+		GFF4251	0.35	+0.6
4,269,682	+		GFF4251	0.35	+1.4
4,269,685	-		GFF4251	0.35	+0.4
4,269,695	-		GFF4251	0.37	-0.7
4,269,701	-		GFF4251	0.38	+0.9
4,269,710	-		GFF4251	0.39	+0.8
4,269,718	+		GFF4251	0.40	-1.3
4,269,728	+		GFF4251	0.41	-0.7
4,269,733	+		GFF4251	0.42	-0.5
4,269,736	-		GFF4251	0.43	+0.0
4,269,741	-		GFF4251	0.43	+0.9
4,269,743	+		GFF4251	0.44	-0.2
4,269,760	+		GFF4251	0.46	-0.6
4,269,763	-		GFF4251	0.46	-2.0
4,269,765	+		GFF4251	0.47	-0.0
4,269,768	-		GFF4251	0.47	-0.5
4,269,773	-		GFF4251	0.48	+0.0
4,269,776	-		GFF4251	0.48	-1.1
4,269,787	+		GFF4251	0.50	-0.6
4,269,808	-		GFF4251	0.53	+1.1
4,269,811	+		GFF4251	0.53	-1.2
4,269,811	+		GFF4251	0.53	+0.2
4,269,819	-		GFF4251	0.54	+0.0
4,269,819	-		GFF4251	0.54	+0.7
4,269,819	-		GFF4251	0.54	-0.9
4,269,819	-		GFF4251	0.54	-0.4
4,269,827	+		GFF4251	0.55	-1.9
4,269,847	+		GFF4251	0.58	-0.1
4,269,847	+		GFF4251	0.58	-0.4
4,269,854	+		GFF4251	0.59	+0.4
4,269,855	+		GFF4251	0.59	+0.0
4,269,855	-		GFF4251	0.59	-0.8
4,269,863	-		GFF4251	0.61	+0.6
4,269,864	+		GFF4251	0.61	+0.2
4,269,868	+		GFF4251	0.61	-1.0
4,269,880	+		GFF4251	0.63	-0.9
4,269,885	+		GFF4251	0.64	-0.2
4,269,895	+		GFF4251	0.65	+1.1
4,269,903	-		GFF4251	0.66	-0.1
4,269,903	-		GFF4251	0.66	-0.2
4,269,904	+		GFF4251	0.66	-0.9
4,269,904	+		GFF4251	0.66	-0.6
4,269,904	+		GFF4251	0.66	+0.0
4,269,912	-		GFF4251	0.68	-0.9
4,269,916	+		GFF4251	0.68	-0.5
4,269,919	-		GFF4251	0.69	+0.7
4,269,921	+		GFF4251	0.69	+0.7
4,269,925	-		GFF4251	0.69	-0.2
4,269,926	+		GFF4251	0.70	+1.4
4,269,926	+		GFF4251	0.70	+1.7
4,269,929	-		GFF4251	0.70	-0.4
4,269,932	-		GFF4251	0.70	+0.1
4,269,940	-		GFF4251	0.71	-0.7
4,269,945	+		GFF4251	0.72	+0.0
4,269,945	-		GFF4251	0.72	+1.4
4,270,002	-		GFF4251	0.80	-1.1
4,270,018	+		GFF4251	0.83	-0.7
4,270,053	+		GFF4251	0.88	-0.1
4,270,055	+		GFF4251	0.88	-0.8
4,270,129	+				-0.1
4,270,145	-				+0.4
4,270,149	+				-0.7
4,270,152	-				-0.8
4,270,157	+				-0.6
4,270,157	-				-0.7
4,270,157	-				+0.1
4,270,157	-				+0.7
4,270,183	-				-1.0
4,270,183	-				-1.2
4,270,183	-				+1.1
4,270,193	-				-0.6
4,270,200	+				+0.4
4,270,200	+				+0.0
4,270,208	-				-0.4
4,270,208	-				-0.2
4,270,208	-				-2.6
4,270,208	-				-0.4
4,270,208	-				-2.6
4,270,208	-				+0.0
4,270,212	+				-1.3
4,270,212	+				-0.8
4,270,220	-				-0.7
4,270,221	-				+0.5
4,270,229	-				+1.2
4,270,234	-				-1.0
4,270,243	+				-1.7
4,270,252	-				+0.2
4,270,252	-				-0.2
4,270,252	-				-0.1
4,270,261	+		GFF4252	0.10	-0.2
4,270,261	+		GFF4252	0.10	-0.3
4,270,266	+		GFF4252	0.11	-1.0
4,270,274	-		GFF4252	0.11	-0.8
4,270,284	+		GFF4252	0.12	-1.6
4,270,284	+		GFF4252	0.12	+0.6
4,270,292	-		GFF4252	0.13	-0.9
4,270,317	-		GFF4252	0.15	-0.1
4,270,334	+		GFF4252	0.17	+1.1
4,270,336	-		GFF4252	0.17	+0.0
4,270,349	-		GFF4252	0.18	-0.6
4,270,351	+		GFF4252	0.18	-1.1
4,270,351	+		GFF4252	0.18	-0.4
4,270,359	-		GFF4252	0.19	-0.5
4,270,367	+		GFF4252	0.20	-0.6
4,270,372	+		GFF4252	0.20	-0.7
4,270,379	-		GFF4252	0.21	+0.7
4,270,379	-		GFF4252	0.21	+1.1
4,270,379	-		GFF4252	0.21	-0.3
4,270,380	-		GFF4252	0.21	+1.5
4,270,380	-		GFF4252	0.21	-1.5
4,270,398	-		GFF4252	0.22	-1.2
4,270,398	-		GFF4252	0.22	-0.4
4,270,410	+		GFF4252	0.23	+0.9
4,270,414	+		GFF4252	0.24	-0.4
4,270,414	+		GFF4252	0.24	-0.2
4,270,414	+		GFF4252	0.24	-1.6
4,270,414	+		GFF4252	0.24	-1.1
4,270,414	+		GFF4252	0.24	-0.1
4,270,415	+		GFF4252	0.24	-1.2
4,270,422	-		GFF4252	0.25	-0.3
4,270,458	-		GFF4252	0.28	-0.5
4,270,485	+		GFF4252	0.30	-0.2
4,270,522	-		GFF4252	0.33	+0.4
4,270,524	+		GFF4252	0.34	+0.3
4,270,530	+		GFF4252	0.34	+0.5
4,270,530	+		GFF4252	0.34	+0.3
4,270,530	+		GFF4252	0.34	-1.6
4,270,538	-		GFF4252	0.35	+0.7
4,270,538	-		GFF4252	0.35	-0.4
4,270,538	-		GFF4252	0.35	-0.9
4,270,548	-		GFF4252	0.36	-0.4
4,270,549	+		GFF4252	0.36	+0.3
4,270,562	-		GFF4252	0.37	-1.9
4,270,562	-		GFF4252	0.37	-0.1
4,270,562	-		GFF4252	0.37	-0.3
4,270,564	+		GFF4252	0.37	+0.4
4,270,564	+		GFF4252	0.37	+0.8
4,270,570	-		GFF4252	0.38	-0.9
4,270,582	-		GFF4252	0.39	-0.9
4,270,588	+		GFF4252	0.39	-0.2
4,270,596	+		GFF4252	0.40	+0.4
4,270,601	+		GFF4252	0.40	-0.0
4,270,601	+		GFF4252	0.40	+0.0
4,270,601	+		GFF4252	0.40	-0.5
4,270,601	+		GFF4252	0.40	+0.1
4,270,601	+		GFF4252	0.40	-0.1
4,270,609	-		GFF4252	0.41	-0.1
4,270,609	-		GFF4252	0.41	-1.8
4,270,633	-		GFF4252	0.43	-0.6
4,270,641	-		GFF4252	0.44	+0.2
4,270,678	+		GFF4252	0.47	-1.8
4,270,678	+		GFF4252	0.47	+1.1
4,270,686	-		GFF4252	0.48	+0.5
4,270,720	+		GFF4252	0.51	+0.6
4,270,746	-		GFF4252	0.53	-2.1
4,270,746	-		GFF4252	0.53	-0.3
4,270,751	-		GFF4252	0.54	-0.9
4,270,757	-		GFF4252	0.54	+0.3
4,270,757	-		GFF4252	0.54	-0.3
4,270,758	+		GFF4252	0.54	+0.5
4,270,771	-		GFF4252	0.56	-2.0
4,270,785	-		GFF4252	0.57	-0.1
4,270,786	+		GFF4252	0.57	+0.2
4,270,800	+		GFF4252	0.58	+0.2
4,270,800	+		GFF4252	0.58	-1.5
4,270,803	-		GFF4252	0.58	+0.1
4,270,808	-		GFF4252	0.59	-1.8
4,270,808	-		GFF4252	0.59	-2.1
4,270,818	+		GFF4252	0.60	+0.9
4,270,818	+		GFF4252	0.60	+0.9
4,270,820	+		GFF4252	0.60	+0.4
4,270,820	-		GFF4252	0.60	-0.2
4,270,827	-		GFF4252	0.61	-0.1
4,270,827	-		GFF4252	0.61	+0.0
4,270,827	-		GFF4252	0.61	-1.9
4,270,827	-		GFF4252	0.61	-2.0
4,270,838	+		GFF4252	0.62	-0.7
4,270,838	+		GFF4252	0.62	+1.1
4,270,865	-		GFF4252	0.64	+0.6
4,270,867	+		GFF4252	0.64	+1.4
4,270,884	+		GFF4252	0.66	+0.5
4,270,903	+		GFF4252	0.67	-0.5
4,270,921	+		GFF4252	0.69	+0.5
4,270,950	-		GFF4252	0.72	-1.3
4,270,983	-		GFF4252	0.75	+0.0
4,270,996	+		GFF4252	0.76	+0.4
4,270,996	+		GFF4252	0.76	-0.4
4,270,999	-		GFF4252	0.76	-0.0
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4,271,004	-		GFF4252	0.76	-0.5
4,271,018	-		GFF4252	0.78	+0.1
4,271,039	-		GFF4252	0.80	+0.3
4,271,039	-		GFF4252	0.80	-0.9
4,271,040	+		GFF4252	0.80	-2.2
4,271,041	+		GFF4252	0.80	+0.1
4,271,041	+		GFF4252	0.80	-1.6
4,271,041	+		GFF4252	0.80	+0.6
4,271,048	-		GFF4252	0.80	-0.4
4,271,049	-		GFF4252	0.80	-0.6
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4,271,049	-		GFF4252	0.80	+1.4
4,271,054	-		GFF4252	0.81	-0.5
4,271,089	+		GFF4252	0.84	-0.1
4,271,102	+		GFF4252	0.85	-2.6
4,271,102	+		GFF4252	0.85	+0.3
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4,271,110	-		GFF4252	0.86	-1.9
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4,271,117	-		GFF4252	0.86	-1.0