Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4138 and GFF4139 are separated by 39 nucleotides GFF4139 and GFF4140 are separated by 116 nucleotides GFF4140 and GFF4141 are separated by 278 nucleotides
GFF4138 - hypothetical protein, at 4,162,308 to 4,163,330
GFF4138
GFF4139 - Putative transmembrane protein, at 4,163,370 to 4,164,089
GFF4139
GFF4140 - Transcription termination factor Rho, at 4,164,206 to 4,165,462
GFF4140
GFF4141 - hypothetical protein, at 4,165,741 to 4,166,706
GFF4141
Position (kb) 4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4163.206 kb on + strand, within GFF4138 at 4163.211 kb on + strand, within GFF4138 at 4163.214 kb on - strand, within GFF4138 at 4163.214 kb on - strand, within GFF4138 at 4163.232 kb on - strand at 4163.241 kb on + strand at 4163.246 kb on + strand at 4163.246 kb on + strand at 4163.256 kb on - strand at 4163.256 kb on - strand at 4163.258 kb on + strand at 4163.261 kb on - strand at 4163.271 kb on - strand at 4163.304 kb on + strand at 4163.312 kb on - strand at 4163.317 kb on - strand at 4163.319 kb on + strand at 4163.324 kb on + strand at 4163.327 kb on - strand at 4163.327 kb on - strand at 4163.340 kb on + strand at 4163.344 kb on - strand at 4163.354 kb on + strand at 4163.354 kb on + strand at 4163.354 kb on + strand at 4163.354 kb on + strand at 4163.354 kb on + strand at 4163.362 kb on - strand at 4163.410 kb on - strand at 4163.412 kb on + strand at 4163.453 kb on + strand, within GFF4139 at 4163.453 kb on + strand, within GFF4139 at 4163.453 kb on + strand, within GFF4139 at 4163.453 kb on + strand, within GFF4139 at 4163.461 kb on - strand, within GFF4139 at 4163.461 kb on - strand, within GFF4139 at 4163.461 kb on - strand, within GFF4139 at 4163.461 kb on - strand, within GFF4139 at 4163.461 kb on - strand, within GFF4139 at 4163.461 kb on - strand, within GFF4139 at 4163.530 kb on + strand, within GFF4139 at 4163.534 kb on + strand, within GFF4139 at 4163.538 kb on - strand, within GFF4139 at 4163.542 kb on - strand, within GFF4139 at 4163.547 kb on + strand, within GFF4139 at 4163.556 kb on + strand, within GFF4139 at 4163.575 kb on + strand, within GFF4139 at 4163.583 kb on - strand, within GFF4139 at 4163.583 kb on - strand, within GFF4139 at 4163.583 kb on - strand, within GFF4139 at 4163.589 kb on - strand, within GFF4139 at 4163.593 kb on + strand, within GFF4139 at 4163.598 kb on + strand, within GFF4139 at 4163.598 kb on + strand, within GFF4139 at 4163.598 kb on + strand, within GFF4139 at 4163.603 kb on + strand, within GFF4139 at 4163.606 kb on - strand, within GFF4139 at 4163.606 kb on - strand, within GFF4139 at 4163.606 kb on - strand, within GFF4139 at 4163.606 kb on - strand, within GFF4139 at 4163.652 kb on + strand, within GFF4139 at 4163.652 kb on + strand, within GFF4139 at 4163.652 kb on + strand, within GFF4139 at 4163.660 kb on - strand, within GFF4139 at 4163.671 kb on + strand, within GFF4139 at 4163.686 kb on - strand, within GFF4139 at 4163.696 kb on + strand, within GFF4139 at 4163.741 kb on + strand, within GFF4139 at 4163.741 kb on + strand, within GFF4139 at 4163.742 kb on - strand, within GFF4139 at 4163.760 kb on - strand, within GFF4139 at 4163.760 kb on - strand, within GFF4139 at 4163.765 kb on - strand, within GFF4139 at 4163.770 kb on - strand, within GFF4139 at 4163.784 kb on - strand, within GFF4139 at 4163.788 kb on - strand, within GFF4139 at 4163.827 kb on - strand, within GFF4139 at 4163.827 kb on - strand, within GFF4139 at 4163.827 kb on - strand, within GFF4139 at 4163.882 kb on + strand, within GFF4139 at 4163.890 kb on - strand, within GFF4139 at 4163.923 kb on + strand, within GFF4139 at 4163.960 kb on - strand, within GFF4139 at 4163.963 kb on + strand, within GFF4139 at 4164.020 kb on + strand at 4164.056 kb on - strand at 4164.056 kb on - strand at 4164.074 kb on + strand at 4164.088 kb on - strand at 4164.092 kb on - strand at 4164.095 kb on - strand at 4164.100 kb on + strand at 4164.132 kb on + strand at 4164.139 kb on - strand at 4164.141 kb on - strand at 4164.142 kb on + strand at 4164.143 kb on + strand at 4164.151 kb on - strand at 4164.151 kb on - strand at 4164.151 kb on - strand at 4164.151 kb on - strand at 4164.155 kb on + strand at 4164.162 kb on + strand at 4164.170 kb on - strand at 4164.170 kb on - strand at 4164.170 kb on - strand at 4164.178 kb on + strand at 4164.178 kb on + strand at 4164.183 kb on + strand at 4164.191 kb on - strand at 4165.500 kb on - strand at 4165.549 kb on - strand at 4165.549 kb on - strand at 4165.591 kb on + strand at 4165.598 kb on + strand at 4165.615 kb on + strand at 4165.634 kb on + strand at 4165.661 kb on + strand at 4165.661 kb on + strand at 4165.661 kb on + strand at 4165.661 kb on + strand at 4165.669 kb on - strand at 4165.669 kb on - strand at 4165.669 kb on - strand at 4165.669 kb on - strand at 4165.669 kb on - strand at 4165.691 kb on - strand at 4165.785 kb on - strand at 4165.794 kb on + strand at 4165.804 kb on + strand at 4165.804 kb on + strand at 4165.804 kb on + strand at 4165.804 kb on + strand at 4165.804 kb on + strand at 4165.809 kb on + strand at 4165.809 kb on + strand at 4165.809 kb on + strand at 4165.810 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.812 kb on - strand at 4165.817 kb on - strand at 4165.817 kb on - strand at 4165.817 kb on - strand at 4165.817 kb on - strand at 4165.817 kb on - strand at 4165.831 kb on + strand at 4165.836 kb on + strand at 4165.837 kb on + strand at 4165.837 kb on + strand at 4165.844 kb on + strand, within GFF4141 at 4165.862 kb on - strand, within GFF4141 at 4165.867 kb on - strand, within GFF4141 at 4165.898 kb on - strand, within GFF4141 at 4165.912 kb on + strand, within GFF4141 at 4165.920 kb on - strand, within GFF4141 at 4165.926 kb on + strand, within GFF4141 at 4165.927 kb on + strand, within GFF4141 at 4165.935 kb on - strand, within GFF4141 at 4165.936 kb on + strand, within GFF4141 at 4165.944 kb on + strand, within GFF4141 at 4165.951 kb on + strand, within GFF4141 at 4165.952 kb on - strand, within GFF4141 at 4165.958 kb on + strand, within GFF4141 at 4165.959 kb on - strand, within GFF4141 at 4165.959 kb on - strand, within GFF4141 at 4165.966 kb on - strand, within GFF4141 at 4165.966 kb on - strand, within GFF4141 at 4165.966 kb on - strand, within GFF4141 at 4165.981 kb on + strand, within GFF4141 at 4166.010 kb on + strand, within GFF4141 at 4166.011 kb on - strand, within GFF4141 at 4166.011 kb on - strand, within GFF4141 at 4166.027 kb on - strand, within GFF4141 at 4166.035 kb on + strand, within GFF4141 at 4166.042 kb on - strand, within GFF4141 at 4166.047 kb on + strand, within GFF4141 at 4166.047 kb on + strand, within GFF4141 at 4166.080 kb on + strand, within GFF4141 at 4166.090 kb on - strand, within GFF4141 at 4166.090 kb on - strand, within GFF4141 at 4166.090 kb on - strand, within GFF4141 at 4166.095 kb on - strand, within GFF4141 at 4166.101 kb on + strand, within GFF4141 at 4166.109 kb on - strand, within GFF4141 at 4166.116 kb on + strand, within GFF4141 at 4166.123 kb on - strand, within GFF4141 at 4166.124 kb on - strand, within GFF4141 at 4166.134 kb on - strand, within GFF4141 at 4166.134 kb on - strand, within GFF4141 at 4166.134 kb on - strand, within GFF4141 at 4166.134 kb on - strand, within GFF4141 at 4166.134 kb on - strand, within GFF4141 at 4166.136 kb on + strand, within GFF4141 at 4166.148 kb on - strand, within GFF4141 at 4166.216 kb on + strand, within GFF4141 at 4166.231 kb on + strand, within GFF4141 at 4166.239 kb on - strand, within GFF4141 at 4166.270 kb on - strand, within GFF4141 at 4166.272 kb on - strand, within GFF4141 at 4166.274 kb on + strand, within GFF4141 at 4166.281 kb on - strand, within GFF4141 at 4166.310 kb on + strand, within GFF4141 at 4166.311 kb on + strand, within GFF4141 at 4166.318 kb on - strand, within GFF4141 at 4166.318 kb on - strand, within GFF4141 at 4166.328 kb on - strand, within GFF4141 at 4166.362 kb on - strand, within GFF4141 at 4166.362 kb on - strand, within GFF4141 at 4166.367 kb on + strand, within GFF4141 at 4166.374 kb on - strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.393 kb on + strand, within GFF4141 at 4166.401 kb on + strand, within GFF4141 at 4166.401 kb on - strand, within GFF4141 at 4166.403 kb on + strand, within GFF4141 at 4166.413 kb on + strand, within GFF4141 at 4166.413 kb on + strand, within GFF4141 at 4166.413 kb on + strand, within GFF4141 at 4166.413 kb on + strand, within GFF4141 at 4166.413 kb on + strand, within GFF4141 at 4166.421 kb on - strand, within GFF4141 at 4166.421 kb on - strand, within GFF4141 at 4166.421 kb on - strand, within GFF4141 at 4166.421 kb on - strand, within GFF4141 at 4166.440 kb on - strand, within GFF4141 at 4166.442 kb on + strand, within GFF4141 at 4166.450 kb on - strand, within GFF4141 at 4166.460 kb on + strand, within GFF4141
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,163,206 + GFF4138 0.88 -2.0 4,163,211 + GFF4138 0.88 -1.1 4,163,214 - GFF4138 0.89 -0.0 4,163,214 - GFF4138 0.89 -1.0 4,163,232 - +0.6 4,163,241 + -0.3 4,163,246 + +0.7 4,163,246 + -1.5 4,163,256 - -0.0 4,163,256 - -2.5 4,163,258 + -1.5 4,163,261 - -0.4 4,163,271 - +0.2 4,163,304 + -1.1 4,163,312 - -1.3 4,163,317 - -0.3 4,163,319 + -0.0 4,163,324 + -0.2 4,163,327 - +0.7 4,163,327 - -0.6 4,163,340 + -0.4 4,163,344 - -1.1 4,163,354 + -0.3 4,163,354 + -1.5 4,163,354 + -0.6 4,163,354 + +0.9 4,163,354 + -0.8 4,163,362 - +0.4 4,163,410 - +0.7 4,163,412 + -0.1 4,163,453 + GFF4139 0.12 +0.5 4,163,453 + GFF4139 0.12 +0.4 4,163,453 + GFF4139 0.12 -1.1 4,163,453 + GFF4139 0.12 -1.8 4,163,461 - GFF4139 0.13 +0.2 4,163,461 - GFF4139 0.13 -2.1 4,163,461 - GFF4139 0.13 -1.8 4,163,461 - GFF4139 0.13 -0.1 4,163,461 - GFF4139 0.13 -1.6 4,163,461 - GFF4139 0.13 +0.7 4,163,530 + GFF4139 0.22 -1.5 4,163,534 + GFF4139 0.23 -0.4 4,163,538 - GFF4139 0.23 -1.5 4,163,542 - GFF4139 0.24 -0.4 4,163,547 + GFF4139 0.25 +0.1 4,163,556 + GFF4139 0.26 +0.9 4,163,575 + GFF4139 0.28 -0.2 4,163,583 - GFF4139 0.30 -1.4 4,163,583 - GFF4139 0.30 +0.7 4,163,583 - GFF4139 0.30 +0.3 4,163,589 - GFF4139 0.30 +0.1 4,163,593 + GFF4139 0.31 -0.6 4,163,598 + GFF4139 0.32 -0.7 4,163,598 + GFF4139 0.32 +0.9 4,163,598 + GFF4139 0.32 -0.7 4,163,603 + GFF4139 0.32 -1.4 4,163,606 - GFF4139 0.33 +1.3 4,163,606 - GFF4139 0.33 -0.4 4,163,606 - GFF4139 0.33 +0.1 4,163,606 - GFF4139 0.33 -1.1 4,163,652 + GFF4139 0.39 -2.2 4,163,652 + GFF4139 0.39 +0.7 4,163,652 + GFF4139 0.39 +0.6 4,163,660 - GFF4139 0.40 -0.3 4,163,671 + GFF4139 0.42 -0.0 4,163,686 - GFF4139 0.44 -0.0 4,163,696 + GFF4139 0.45 -0.2 4,163,741 + GFF4139 0.52 -0.5 4,163,741 + GFF4139 0.52 +1.0 4,163,742 - GFF4139 0.52 -1.1 4,163,760 - GFF4139 0.54 -0.8 4,163,760 - GFF4139 0.54 -2.5 4,163,765 - GFF4139 0.55 -1.2 4,163,770 - GFF4139 0.56 -1.1 4,163,784 - GFF4139 0.57 +0.1 4,163,788 - GFF4139 0.58 +0.2 4,163,827 - GFF4139 0.63 -0.2 4,163,827 - GFF4139 0.63 -0.9 4,163,827 - GFF4139 0.63 +0.8 4,163,882 + GFF4139 0.71 -1.5 4,163,890 - GFF4139 0.72 +0.6 4,163,923 + GFF4139 0.77 +0.1 4,163,960 - GFF4139 0.82 -0.6 4,163,963 + GFF4139 0.82 +0.3 4,164,020 + -0.9 4,164,056 - +0.3 4,164,056 - +0.1 4,164,074 + -0.5 4,164,088 - +0.1 4,164,092 - -1.9 4,164,095 - -0.1 4,164,100 + -0.3 4,164,132 + -0.2 4,164,139 - -1.2 4,164,141 - +0.2 4,164,142 + +0.8 4,164,143 + -2.8 4,164,151 - -0.2 4,164,151 - -0.8 4,164,151 - -0.6 4,164,151 - +0.5 4,164,155 + -0.4 4,164,162 + +0.7 4,164,170 - -0.6 4,164,170 - -0.0 4,164,170 - +0.8 4,164,178 + -0.6 4,164,178 + -2.5 4,164,183 + +0.7 4,164,191 - +0.6 4,165,500 - -0.1 4,165,549 - +0.1 4,165,549 - +0.6 4,165,591 + -1.5 4,165,598 + -0.1 4,165,615 + -0.5 4,165,634 + -0.6 4,165,661 + +0.1 4,165,661 + +1.6 4,165,661 + +0.8 4,165,661 + -0.3 4,165,669 - -1.8 4,165,669 - -0.8 4,165,669 - +0.6 4,165,669 - -0.2 4,165,669 - +0.5 4,165,691 - +0.1 4,165,785 - -0.4 4,165,794 + -0.3 4,165,804 + +1.3 4,165,804 + +0.4 4,165,804 + -1.8 4,165,804 + -0.2 4,165,804 + -0.4 4,165,809 + -0.7 4,165,809 + -0.7 4,165,809 + -0.5 4,165,810 - -0.7 4,165,812 - -1.6 4,165,812 - -0.4 4,165,812 - -0.9 4,165,812 - -2.7 4,165,812 - +0.4 4,165,812 - +1.2 4,165,812 - +0.1 4,165,812 - +1.2 4,165,812 - -0.4 4,165,812 - -0.1 4,165,817 - -0.1 4,165,817 - -1.1 4,165,817 - -2.5 4,165,817 - +1.2 4,165,817 - +1.3 4,165,831 + +0.7 4,165,836 + +0.7 4,165,837 + -0.0 4,165,837 + -0.1 4,165,844 + GFF4141 0.11 -1.4 4,165,862 - GFF4141 0.13 -0.2 4,165,867 - GFF4141 0.13 +0.1 4,165,898 - GFF4141 0.16 -0.3 4,165,912 + GFF4141 0.18 -2.0 4,165,920 - GFF4141 0.19 -2.4 4,165,926 + GFF4141 0.19 -0.0 4,165,927 + GFF4141 0.19 +0.2 4,165,935 - GFF4141 0.20 -2.1 4,165,936 + GFF4141 0.20 -0.2 4,165,944 + GFF4141 0.21 -1.7 4,165,951 + GFF4141 0.22 +0.4 4,165,952 - GFF4141 0.22 -0.2 4,165,958 + GFF4141 0.22 -0.2 4,165,959 - GFF4141 0.23 -0.4 4,165,959 - GFF4141 0.23 +1.2 4,165,966 - GFF4141 0.23 +1.8 4,165,966 - GFF4141 0.23 +0.3 4,165,966 - GFF4141 0.23 +0.5 4,165,981 + GFF4141 0.25 +0.3 4,166,010 + GFF4141 0.28 +0.6 4,166,011 - GFF4141 0.28 +0.5 4,166,011 - GFF4141 0.28 -1.0 4,166,027 - GFF4141 0.30 -1.1 4,166,035 + GFF4141 0.30 -1.0 4,166,042 - GFF4141 0.31 -0.1 4,166,047 + GFF4141 0.32 -0.0 4,166,047 + GFF4141 0.32 -0.2 4,166,080 + GFF4141 0.35 -0.7 4,166,090 - GFF4141 0.36 -2.2 4,166,090 - GFF4141 0.36 -0.1 4,166,090 - GFF4141 0.36 -0.3 4,166,095 - GFF4141 0.37 -0.4 4,166,101 + GFF4141 0.37 +0.8 4,166,109 - GFF4141 0.38 +0.0 4,166,116 + GFF4141 0.39 -0.7 4,166,123 - GFF4141 0.40 -0.1 4,166,124 - GFF4141 0.40 -0.5 4,166,134 - GFF4141 0.41 -2.8 4,166,134 - GFF4141 0.41 -0.1 4,166,134 - GFF4141 0.41 -0.8 4,166,134 - GFF4141 0.41 -0.9 4,166,134 - GFF4141 0.41 +0.2 4,166,136 + GFF4141 0.41 -2.9 4,166,148 - GFF4141 0.42 +0.2 4,166,216 + GFF4141 0.49 +0.3 4,166,231 + GFF4141 0.51 -1.0 4,166,239 - GFF4141 0.52 -1.6 4,166,270 - GFF4141 0.55 +0.5 4,166,272 - GFF4141 0.55 -0.5 4,166,274 + GFF4141 0.55 -1.1 4,166,281 - GFF4141 0.56 +0.1 4,166,310 + GFF4141 0.59 -1.8 4,166,311 + GFF4141 0.59 -0.6 4,166,318 - GFF4141 0.60 -0.2 4,166,318 - GFF4141 0.60 -1.0 4,166,328 - GFF4141 0.61 -0.6 4,166,362 - GFF4141 0.64 -0.6 4,166,362 - GFF4141 0.64 -1.0 4,166,367 + GFF4141 0.65 -0.2 4,166,374 - GFF4141 0.66 -2.5 4,166,393 + GFF4141 0.67 -0.5 4,166,393 + GFF4141 0.67 -0.9 4,166,393 + GFF4141 0.67 +0.2 4,166,393 + GFF4141 0.67 +0.1 4,166,393 + GFF4141 0.67 -1.5 4,166,393 + GFF4141 0.67 +1.4 4,166,393 + GFF4141 0.67 -0.5 4,166,401 + GFF4141 0.68 -0.6 4,166,401 - GFF4141 0.68 +0.4 4,166,403 + GFF4141 0.69 -0.4 4,166,413 + GFF4141 0.70 -0.2 4,166,413 + GFF4141 0.70 +0.1 4,166,413 + GFF4141 0.70 +1.0 4,166,413 + GFF4141 0.70 -0.1 4,166,413 + GFF4141 0.70 -0.4 4,166,421 - GFF4141 0.70 -0.5 4,166,421 - GFF4141 0.70 -0.3 4,166,421 - GFF4141 0.70 -0.8 4,166,421 - GFF4141 0.70 -0.0 4,166,440 - GFF4141 0.72 +0.9 4,166,442 + GFF4141 0.73 +0.3 4,166,450 - GFF4141 0.73 +0.4 4,166,460 + GFF4141 0.74 +0.3
Or see this region's nucleotide sequence