Strain Fitness in Sphingobium sp. HT1-2 around GFF4106

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,126,198	+				-1.5
4,126,206	-				-0.5
4,126,227	+				-1.7
4,126,227	+				-0.8
4,126,227	+				+1.0
4,126,227	+				-0.5
4,126,227	+				-0.9
4,126,235	-				+0.1
4,126,235	-				-0.7
4,126,240	-				-1.1
4,126,245	+				-0.4
4,126,245	-				+0.3
4,126,245	-				+0.0
4,126,252	+				+0.2
4,126,274	+				-0.8
4,126,281	+				-0.7
4,126,282	+				+0.8
4,126,295	-				+0.2
4,126,301	-				-0.2
4,126,301	-				-0.1
4,126,321	+				+0.1
4,126,328	-				-0.3
4,126,343	+				-0.4
4,126,346	-				-1.9
4,126,353	+				+0.2
4,126,353	+				+0.4
4,126,381	-				-0.4
4,126,396	+				-1.6
4,126,402	+				-1.8
4,126,403	+				+0.1
4,126,403	+				+0.5
4,126,404	-				-0.7
4,126,404	-				+0.8
4,126,404	-				-1.1
4,126,407	+				-0.2
4,126,408	+				-1.0
4,126,408	+				+0.2
4,126,436	+				-0.7
4,126,439	-				+0.6
4,126,454	-				-1.4
4,126,457	+				-0.0
4,126,475	-		GFF4106	0.10	+0.1
4,126,477	+		GFF4106	0.10	+0.1
4,126,509	+		GFF4106	0.12	-0.6
4,126,515	-		GFF4106	0.12	-2.3
4,126,519	+		GFF4106	0.13	-1.1
4,126,522	-		GFF4106	0.13	-0.1
4,126,527	-		GFF4106	0.13	-0.2
4,126,545	+		GFF4106	0.14	-1.1
4,126,545	+		GFF4106	0.14	+0.0
4,126,545	+		GFF4106	0.14	-0.9
4,126,545	+		GFF4106	0.14	+0.3
4,126,545	+		GFF4106	0.14	-1.1
4,126,546	-		GFF4106	0.14	-1.8
4,126,553	-		GFF4106	0.14	+0.8
4,126,553	-		GFF4106	0.14	-1.0
4,126,553	-		GFF4106	0.14	-0.6
4,126,553	-		GFF4106	0.14	+0.1
4,126,553	-		GFF4106	0.14	-0.6
4,126,553	-		GFF4106	0.14	-2.2
4,126,553	-		GFF4106	0.14	-1.1
4,126,553	-		GFF4106	0.14	-1.2
4,126,558	-		GFF4106	0.15	-0.5
4,126,580	+		GFF4106	0.16	+0.2
4,126,585	+		GFF4106	0.16	+0.1
4,126,585	+		GFF4106	0.16	-0.8
4,126,588	-		GFF4106	0.16	+0.7
4,126,588	-		GFF4106	0.16	-2.1
4,126,596	-		GFF4106	0.17	-0.5
4,126,600	+		GFF4106	0.17	-0.4
4,126,615	-		GFF4106	0.17	+0.4
4,126,622	-		GFF4106	0.18	-0.8
4,126,643	-		GFF4106	0.19	-1.0
4,126,644	-		GFF4106	0.19	+0.7
4,126,645	-		GFF4106	0.19	-2.3
4,126,658	-		GFF4106	0.20	-0.4
4,126,663	+		GFF4106	0.20	-0.2
4,126,668	+		GFF4106	0.20	-0.2
4,126,668	+		GFF4106	0.20	+0.2
4,126,673	+		GFF4106	0.20	+0.3
4,126,676	-		GFF4106	0.21	+0.5
4,126,686	+		GFF4106	0.21	-0.9
4,126,689	-		GFF4106	0.21	-2.6
4,126,702	+		GFF4106	0.22	-0.5
4,126,718	+		GFF4106	0.23	+0.1
4,126,718	+		GFF4106	0.23	-2.3
4,126,718	+		GFF4106	0.23	+0.3
4,126,726	-		GFF4106	0.23	+0.7
4,126,726	-		GFF4106	0.23	-1.9
4,126,728	+		GFF4106	0.23	+0.3
4,126,764	+		GFF4106	0.25	+1.1
4,126,772	-		GFF4106	0.26	+0.7
4,126,780	+		GFF4106	0.26	-2.8
4,126,788	-		GFF4106	0.26	-0.6
4,126,794	+		GFF4106	0.27	-0.1
4,126,802	+		GFF4106	0.27	-0.5
4,126,802	-		GFF4106	0.27	-2.3
4,126,807	+		GFF4106	0.27	-0.1
4,126,819	+		GFF4106	0.28	-1.3
4,126,819	+		GFF4106	0.28	-0.3
4,126,819	+		GFF4106	0.28	-0.7
4,126,819	+		GFF4106	0.28	-1.5
4,126,822	-		GFF4106	0.28	-1.5
4,126,823	+		GFF4106	0.28	-0.7
4,126,827	-		GFF4106	0.28	+0.2
4,126,827	-		GFF4106	0.28	-2.3
4,126,828	+		GFF4106	0.29	+1.8
4,126,828	+		GFF4106	0.29	+1.2
4,126,849	+		GFF4106	0.30	-1.5
4,126,881	-		GFF4106	0.31	+0.8
4,126,893	+		GFF4106	0.32	+0.2
4,126,893	+		GFF4106	0.32	-0.3
4,126,893	+		GFF4106	0.32	-0.8
4,126,895	-		GFF4106	0.32	-0.3
4,126,901	-		GFF4106	0.32	+1.0
4,126,901	-		GFF4106	0.32	-0.1
4,126,908	+		GFF4106	0.33	-0.3
4,126,908	+		GFF4106	0.33	-0.3
4,126,919	+		GFF4106	0.33	-0.4
4,126,924	+		GFF4106	0.33	+0.3
4,126,927	-		GFF4106	0.34	+0.8
4,126,929	+		GFF4106	0.34	+0.0
4,126,932	-		GFF4106	0.34	-1.7
4,126,937	-		GFF4106	0.34	-0.3
4,126,970	+		GFF4106	0.36	-1.9
4,126,972	-		GFF4106	0.36	+0.4
4,126,977	+		GFF4106	0.36	-0.1
4,126,977	+		GFF4106	0.36	+1.2
4,126,978	-		GFF4106	0.36	-0.2
4,126,982	+		GFF4106	0.36	-1.4
4,126,982	+		GFF4106	0.36	+0.3
4,127,012	-		GFF4106	0.38	+1.1
4,127,018	+		GFF4106	0.38	+0.4
4,127,018	+		GFF4106	0.38	+0.8
4,127,018	+		GFF4106	0.38	-0.3
4,127,020	+		GFF4106	0.38	-0.3
4,127,020	+		GFF4106	0.38	-1.3
4,127,020	+		GFF4106	0.38	-2.6
4,127,020	+		GFF4106	0.38	-0.1
4,127,020	+		GFF4106	0.38	+0.6
4,127,020	+		GFF4106	0.38	+0.3
4,127,020	+		GFF4106	0.38	+1.4
4,127,020	+		GFF4106	0.38	-0.2
4,127,020	+		GFF4106	0.38	-1.9
4,127,020	+		GFF4106	0.38	+0.2
4,127,020	+		GFF4106	0.38	+0.6
4,127,020	+		GFF4106	0.38	-0.6
4,127,020	+		GFF4106	0.38	-0.8
4,127,026	-		GFF4106	0.39	-0.2
4,127,026	-		GFF4106	0.39	-0.5
4,127,028	-		GFF4106	0.39	+0.0
4,127,028	-		GFF4106	0.39	-0.6
4,127,028	-		GFF4106	0.39	-0.5
4,127,028	-		GFF4106	0.39	+0.0
4,127,028	-		GFF4106	0.39	+0.0
4,127,028	-		GFF4106	0.39	-0.9
4,127,085	-		GFF4106	0.42	-0.3
4,127,134	+		GFF4106	0.44	-0.1
4,127,139	+		GFF4106	0.45	-0.3
4,127,139	+		GFF4106	0.45	-0.6
4,127,145	+		GFF4106	0.45	-0.0
4,127,147	-		GFF4106	0.45	-0.5
4,127,147	-		GFF4106	0.45	+0.1
4,127,150	+		GFF4106	0.45	-0.1
4,127,176	+		GFF4106	0.47	-0.3
4,127,190	+		GFF4106	0.47	-0.3
4,127,190	+		GFF4106	0.47	-0.5
4,127,211	-		GFF4106	0.48	-0.6
4,127,226	+		GFF4106	0.49	+0.5
4,127,234	+		GFF4106	0.50	-1.3
4,127,234	-		GFF4106	0.50	-1.6
4,127,235	-		GFF4106	0.50	-2.0
4,127,280	+		GFF4106	0.52	+0.5
4,127,280	+		GFF4106	0.52	-0.4
4,127,280	+		GFF4106	0.52	-1.5
4,127,280	+		GFF4106	0.52	+0.2
4,127,283	-		GFF4106	0.52	-1.2
4,127,285	+		GFF4106	0.52	-1.8
4,127,288	-		GFF4106	0.52	-1.5
4,127,288	-		GFF4106	0.52	-0.3
4,127,288	-		GFF4106	0.52	-0.2
4,127,288	-		GFF4106	0.52	+0.5
4,127,290	+		GFF4106	0.52	-0.4
4,127,293	-		GFF4106	0.53	+0.2
4,127,293	-		GFF4106	0.53	+0.7
4,127,298	-		GFF4106	0.53	+1.0
4,127,298	-		GFF4106	0.53	-0.1
4,127,301	-		GFF4106	0.53	-1.1
4,127,304	+		GFF4106	0.53	+0.1
4,127,304	+		GFF4106	0.53	+1.3
4,127,318	+		GFF4106	0.54	+0.3
4,127,318	+		GFF4106	0.54	-0.6
4,127,318	+		GFF4106	0.54	+0.2
4,127,318	+		GFF4106	0.54	+0.0
4,127,321	-		GFF4106	0.54	-1.5
4,127,326	-		GFF4106	0.54	+0.3
4,127,327	+		GFF4106	0.54	-1.2
4,127,331	-		GFF4106	0.55	+0.3
4,127,331	-		GFF4106	0.55	+0.2
4,127,337	+		GFF4106	0.55	+1.0
4,127,338	+		GFF4106	0.55	+0.0
4,127,340	-		GFF4106	0.55	-0.8
4,127,340	-		GFF4106	0.55	+1.1
4,127,343	+		GFF4106	0.55	-0.5
4,127,343	+		GFF4106	0.55	-0.9
4,127,348	+		GFF4106	0.55	-0.3
4,127,348	+		GFF4106	0.55	+0.9
4,127,349	-		GFF4106	0.55	-1.3
4,127,356	-		GFF4106	0.56	+0.7
4,127,359	+		GFF4106	0.56	+0.8
4,127,359	+		GFF4106	0.56	-1.8
4,127,359	+		GFF4106	0.56	+0.3
4,127,359	+		GFF4106	0.56	-0.2
4,127,359	+		GFF4106	0.56	+0.6
4,127,367	-		GFF4106	0.56	+0.1
4,127,367	-		GFF4106	0.56	-0.4
4,127,367	-		GFF4106	0.56	+0.5
4,127,367	-		GFF4106	0.56	+0.1
4,127,367	-		GFF4106	0.56	-1.2
4,127,367	-		GFF4106	0.56	-0.7
4,127,367	-		GFF4106	0.56	+0.5
4,127,374	+		GFF4106	0.57	-0.5
4,127,385	+		GFF4106	0.57	-0.2
4,127,405	-		GFF4106	0.58	-0.2
4,127,410	-		GFF4106	0.59	+0.6
4,127,420	-		GFF4106	0.59	+1.3
4,127,421	+		GFF4106	0.59	+1.7
4,127,421	+		GFF4106	0.59	+0.8
4,127,421	+		GFF4106	0.59	+0.5
4,127,421	+		GFF4106	0.59	+0.4
4,127,421	+		GFF4106	0.59	-0.7
4,127,421	+		GFF4106	0.59	-1.9
4,127,424	-		GFF4106	0.59	+0.7
4,127,426	+		GFF4106	0.59	-0.3
4,127,429	-		GFF4106	0.60	-0.1
4,127,429	-		GFF4106	0.60	-0.2
4,127,429	-		GFF4106	0.60	+0.3
4,127,429	-		GFF4106	0.60	-1.1
4,127,429	-		GFF4106	0.60	+0.8
4,127,429	-		GFF4106	0.60	-2.5
4,127,429	-		GFF4106	0.60	+1.5
4,127,443	+		GFF4106	0.60	-1.7
4,127,443	+		GFF4106	0.60	+0.5
4,127,443	+		GFF4106	0.60	+0.3
4,127,449	-		GFF4106	0.61	+1.1
4,127,451	-		GFF4106	0.61	-1.0
4,127,451	-		GFF4106	0.61	-1.8
4,127,451	-		GFF4106	0.61	+1.1
4,127,451	-		GFF4106	0.61	-1.2
4,127,451	-		GFF4106	0.61	+0.2
4,127,454	-		GFF4106	0.61	-3.3
4,127,477	+		GFF4106	0.62	+0.3
4,127,479	+		GFF4106	0.62	-0.7
4,127,483	-		GFF4106	0.62	+0.2
4,127,485	+		GFF4106	0.63	-0.0
4,127,485	-		GFF4106	0.63	+0.2
4,127,490	+		GFF4106	0.63	+0.9
4,127,490	+		GFF4106	0.63	+1.7
4,127,490	+		GFF4106	0.63	+0.5
4,127,495	-		GFF4106	0.63	+0.7
4,127,498	-		GFF4106	0.63	-1.3
4,127,519	+		GFF4106	0.64	-0.4
4,127,524	+		GFF4106	0.65	-1.1
4,127,524	+		GFF4106	0.65	-0.3
4,127,524	+		GFF4106	0.65	+0.4
4,127,524	+		GFF4106	0.65	+0.0
4,127,524	+		GFF4106	0.65	+0.1
4,127,525	-		GFF4106	0.65	-0.9
4,127,527	-		GFF4106	0.65	-0.1
4,127,527	-		GFF4106	0.65	-0.3
4,127,527	-		GFF4106	0.65	-0.8
4,127,529	+		GFF4106	0.65	-2.1
4,127,532	-		GFF4106	0.65	-0.4
4,127,532	-		GFF4106	0.65	-1.2
4,127,532	-		GFF4106	0.65	+0.2
4,127,533	-		GFF4106	0.65	+0.4
4,127,544	+		GFF4106	0.66	-1.3
4,127,564	-		GFF4106	0.67	-1.2
4,127,570	+		GFF4106	0.67	-2.7
4,127,575	-		GFF4106	0.67	-0.5
4,127,580	+		GFF4106	0.67	+0.4
4,127,580	+		GFF4106	0.67	+0.0
4,127,588	-		GFF4106	0.68	+0.8
4,127,592	+		GFF4106	0.68	-1.8
4,127,592	+		GFF4106	0.68	+1.3
4,127,600	-		GFF4106	0.68	-1.4
4,127,611	+		GFF4106	0.69	+1.7
4,127,611	+		GFF4106	0.69	-0.9
4,127,619	-		GFF4106	0.69	+0.2
4,127,619	-		GFF4106	0.69	+1.2
4,127,634	-		GFF4106	0.70	-1.1
4,127,673	+		GFF4106	0.72	+0.5
4,127,673	+		GFF4106	0.72	+0.7
4,127,681	-		GFF4106	0.73	-0.3
4,127,681	-		GFF4106	0.73	-0.3
4,127,691	-		GFF4106	0.73	-1.3
4,127,699	-		GFF4106	0.74	-0.2
4,127,701	+		GFF4106	0.74	-0.8
4,127,702	+		GFF4106	0.74	-0.4
4,127,707	+		GFF4106	0.74	-0.2
4,127,722	-		GFF4106	0.75	-0.8
4,127,724	+		GFF4106	0.75	+0.5
4,127,724	+		GFF4106	0.75	-2.0
4,127,727	-		GFF4106	0.75	-0.1
4,127,732	+		GFF4106	0.75	-0.0
4,127,732	+		GFF4106	0.75	-0.1
4,127,732	+		GFF4106	0.75	-0.1
4,127,732	+		GFF4106	0.75	-1.3
4,127,732	+		GFF4106	0.75	+1.0
4,127,732	+		GFF4106	0.75	+0.7
4,127,732	+		GFF4106	0.75	+1.0
4,127,732	-		GFF4106	0.75	-0.4
4,127,740	-		GFF4106	0.76	-0.7
4,127,740	-		GFF4106	0.76	+0.3
4,127,740	-		GFF4106	0.76	-2.5
4,127,740	-		GFF4106	0.76	-0.2
4,127,740	-		GFF4106	0.76	+0.3
4,127,752	+		GFF4106	0.76	-0.4
4,127,755	-		GFF4106	0.77	+1.0
4,127,755	-		GFF4106	0.77	+0.2
4,127,770	-		GFF4106	0.77	-0.2
4,127,786	-		GFF4106	0.78	-0.5
4,127,786	-		GFF4106	0.78	+0.2
4,127,796	-		GFF4106	0.79	+0.4
4,127,799	+		GFF4106	0.79	-0.1
4,127,799	+		GFF4106	0.79	+1.0
4,127,799	+		GFF4106	0.79	-2.0
4,127,799	+		GFF4106	0.79	-0.9
4,127,799	+		GFF4106	0.79	-1.3
4,127,799	+		GFF4106	0.79	-2.1
4,127,799	+		GFF4106	0.79	-0.7
4,127,799	+		GFF4106	0.79	-0.3
4,127,799	+		GFF4106	0.79	+1.2
4,127,799	+		GFF4106	0.79	+0.9
4,127,799	+		GFF4106	0.79	-1.7
4,127,802	-		GFF4106	0.79	+0.2
4,127,804	+		GFF4106	0.79	-0.8
4,127,805	+		GFF4106	0.79	-1.6
4,127,807	-		GFF4106	0.79	-2.5
4,127,807	-		GFF4106	0.79	-0.9
4,127,807	-		GFF4106	0.79	-0.8
4,127,807	-		GFF4106	0.79	-0.4
4,127,807	-		GFF4106	0.79	-3.5
4,127,807	-		GFF4106	0.79	-0.2
4,127,807	-		GFF4106	0.79	-0.3
4,127,807	-		GFF4106	0.79	-0.8
4,127,807	-		GFF4106	0.79	+0.0
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4,128,043	+				+0.7
4,128,049	+				+0.1
4,128,051	-				-1.8
4,128,056	-				-0.6
4,128,056	-				-1.5
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4,128,790	-				-0.7
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4,128,800	-				-2.9
4,128,800	-				+1.3
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