Strain Fitness in Sphingobium sp. HT1-2 around GFF4080

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,090,449	-				+0.2
4,090,454	+				+0.3
4,090,455	-				+1.0
4,090,457	-				+0.7
4,090,468	+				-0.9
4,090,468	+				-1.0
4,090,481	+				+0.0
4,090,481	+				+1.1
4,090,481	+				+1.7
4,090,481	+				-0.1
4,090,481	+				-0.1
4,090,481	+				-0.3
4,090,481	+				-1.0
4,090,489	-				+0.3
4,090,489	-				-1.2
4,090,489	-				-0.3
4,090,489	-				-0.5
4,090,489	-				+0.7
4,090,489	-				+0.0
4,090,489	-				-2.7
4,090,520	+				-0.6
4,090,528	-				-0.9
4,090,528	-				-0.2
4,090,548	+				-1.3
4,090,556	-				-1.2
4,090,556	-				-0.7
4,090,572	+				-1.0
4,090,602	-				-0.7
4,090,624	+				-1.2
4,090,624	+				-0.6
4,090,624	+				-0.5
4,090,627	-				+0.5
4,090,627	-				-1.2
4,090,627	-				+0.6
4,090,638	+				-0.1
4,090,653	-		GFF4079	0.10	-0.1
4,090,655	+		GFF4079	0.10	+0.2
4,090,661	+		GFF4079	0.11	-1.2
4,090,661	+		GFF4079	0.11	+0.4
4,090,661	+		GFF4079	0.11	+0.4
4,090,663	-		GFF4079	0.12	-1.4
4,090,669	-		GFF4079	0.12	-1.3
4,090,669	-		GFF4079	0.12	-0.9
4,090,669	-		GFF4079	0.12	-0.4
4,090,669	-		GFF4079	0.12	+0.3
4,090,669	-		GFF4079	0.12	-1.4
4,090,669	-		GFF4079	0.12	-0.2
4,090,669	-		GFF4079	0.12	+1.0
4,090,720	+		GFF4079	0.19	-0.6
4,090,721	+		GFF4079	0.20	-1.2
4,090,729	+		GFF4079	0.21	+0.2
4,090,729	-		GFF4079	0.21	-1.7
4,090,729	-		GFF4079	0.21	+1.3
4,090,740	+		GFF4079	0.22	-0.4
4,090,741	+		GFF4079	0.22	+0.9
4,090,772	+		GFF4079	0.27	-2.3
4,090,802	+		GFF4079	0.31	-0.0
4,090,807	+		GFF4079	0.31	-0.9
4,090,807	+		GFF4079	0.31	-2.0
4,090,807	+		GFF4079	0.31	+0.9
4,090,807	+		GFF4079	0.31	+0.1
4,090,815	-		GFF4079	0.33	-0.7
4,090,824	+		GFF4079	0.34	-2.3
4,090,873	+		GFF4079	0.40	-1.1
4,090,874	+		GFF4079	0.41	-0.3
4,090,874	+		GFF4079	0.41	-1.9
4,090,874	+		GFF4079	0.41	-1.6
4,090,874	+		GFF4079	0.41	-1.4
4,090,881	-		GFF4079	0.42	+0.1
4,090,881	-		GFF4079	0.42	+0.6
4,090,882	-		GFF4079	0.42	-0.5
4,090,882	-		GFF4079	0.42	+1.0
4,090,886	+		GFF4079	0.42	-0.4
4,090,886	+		GFF4079	0.42	+0.3
4,090,886	+		GFF4079	0.42	+0.2
4,090,894	-		GFF4079	0.43	-0.4
4,090,894	-		GFF4079	0.43	-0.5
4,090,894	-		GFF4079	0.43	+0.7
4,090,894	-		GFF4079	0.43	-0.7
4,090,894	-		GFF4079	0.43	+0.5
4,090,894	-		GFF4079	0.43	-2.4
4,090,898	+		GFF4079	0.44	-1.1
4,090,904	+		GFF4079	0.45	-1.0
4,090,916	-		GFF4079	0.46	+0.6
4,090,921	-		GFF4079	0.47	+0.4
4,090,923	+		GFF4079	0.47	-1.4
4,090,923	+		GFF4079	0.47	-1.0
4,090,923	+		GFF4079	0.47	+0.1
4,090,923	+		GFF4079	0.47	+0.8
4,090,923	+		GFF4079	0.47	-1.4
4,090,923	+		GFF4079	0.47	-0.7
4,090,923	+		GFF4079	0.47	-1.5
4,090,923	+		GFF4079	0.47	-0.1
4,090,923	+		GFF4079	0.47	-0.3
4,090,923	+		GFF4079	0.47	+0.9
4,090,923	+		GFF4079	0.47	-1.3
4,090,931	-		GFF4079	0.48	-1.0
4,090,931	-		GFF4079	0.48	-1.0
4,090,931	-		GFF4079	0.48	-0.4
4,090,931	-		GFF4079	0.48	-0.1
4,090,931	-		GFF4079	0.48	-2.4
4,090,931	-		GFF4079	0.48	-0.4
4,090,931	-		GFF4079	0.48	-0.1
4,090,931	-		GFF4079	0.48	-1.2
4,090,931	-		GFF4079	0.48	+0.8
4,090,931	-		GFF4079	0.48	-0.4
4,090,931	-		GFF4079	0.48	-0.4
4,090,931	-		GFF4079	0.48	-0.1
4,090,931	-		GFF4079	0.48	+0.6
4,090,931	-		GFF4079	0.48	-1.0
4,090,931	-		GFF4079	0.48	-0.7
4,090,931	-		GFF4079	0.48	+0.2
4,090,931	-		GFF4079	0.48	-0.7
4,090,931	-		GFF4079	0.48	-0.7
4,090,931	-		GFF4079	0.48	-1.6
4,090,931	-		GFF4079	0.48	+0.3
4,090,941	-		GFF4079	0.50	-0.5
4,091,009	+		GFF4079	0.59	+0.9
4,091,029	+		GFF4079	0.62	-1.2
4,091,029	+		GFF4079	0.62	-0.3
4,091,037	-		GFF4079	0.63	-0.3
4,091,037	-		GFF4079	0.63	-1.3
4,091,038	-		GFF4079	0.63	+0.5
4,091,051	+		GFF4079	0.65	+0.7
4,091,057	+		GFF4079	0.66	-0.4
4,091,057	+		GFF4079	0.66	+0.1
4,091,057	+		GFF4079	0.66	-2.0
4,091,057	+		GFF4079	0.66	+0.6
4,091,057	+		GFF4079	0.66	-0.7
4,091,057	+		GFF4079	0.66	-1.1
4,091,057	+		GFF4079	0.66	+0.5
4,091,057	+		GFF4079	0.66	-0.3
4,091,057	+		GFF4079	0.66	+0.1
4,091,059	-		GFF4079	0.66	+0.1
4,091,065	-		GFF4079	0.67	-0.8
4,091,065	-		GFF4079	0.67	-0.4
4,091,065	-		GFF4079	0.67	-3.1
4,091,065	-		GFF4079	0.67	+0.1
4,091,070	-		GFF4079	0.68	-0.7
4,091,089	-		GFF4079	0.70	+0.2
4,091,096	+		GFF4079	0.71	-1.2
4,091,096	+		GFF4079	0.71	-2.3
4,091,101	+		GFF4079	0.72	-0.4
4,091,104	-		GFF4079	0.72	+1.4
4,091,104	-		GFF4079	0.72	-1.7
4,091,120	-		GFF4079	0.75	+0.7
4,091,123	+		GFF4079	0.75	-1.4
4,091,129	+		GFF4079	0.76	-1.4
4,091,129	+		GFF4079	0.76	-1.4
4,091,129	+		GFF4079	0.76	+1.5
4,091,131	-		GFF4079	0.76	+0.4
4,091,131	-		GFF4079	0.76	-2.0
4,091,131	-		GFF4079	0.76	-0.8
4,091,134	+		GFF4079	0.76	-1.5
4,091,137	+		GFF4079	0.77	-1.7
4,091,137	-		GFF4079	0.77	+0.6
4,091,139	+		GFF4079	0.77	-2.0
4,091,142	-		GFF4079	0.78	-2.3
4,091,155	-		GFF4079	0.79	+0.1
4,091,157	-		GFF4079	0.80	-1.3
4,091,174	+		GFF4079	0.82	+0.3
4,091,193	+		GFF4079	0.85	-1.3
4,091,216	+		GFF4079	0.88	+1.4
4,091,227	+		GFF4079	0.89	-0.3
4,091,228	-		GFF4079	0.89	+1.4
4,091,234	-				-0.4
4,091,236	+				-0.1
4,091,236	+				-0.4
4,091,239	-				+0.1
4,091,244	-				+0.5
4,091,244	-				+0.0
4,091,249	-				+0.8
4,091,249	-				-0.6
4,091,252	+				-1.2
4,091,265	-				-0.3
4,091,309	+				-0.2
4,091,311	+				-0.1
4,091,316	+				-2.1
4,091,316	+				+0.3
4,091,319	-				+0.2
4,091,325	+				-1.8
4,091,359	-				+0.7
4,091,362	+				-0.9
4,091,362	+				-0.0
4,091,362	+				+0.3
4,091,367	+				-0.6
4,091,367	+				-0.9
4,091,367	+				+0.3
4,091,367	+				-0.3
4,091,367	+				+1.0
4,091,370	-				+0.7
4,091,370	-				-0.6
4,091,370	-				-0.1
4,091,375	-				-0.6
4,091,375	-				+1.3
4,091,375	-				-1.2
4,091,375	-				-0.3
4,091,382	-				+0.9
4,091,382	-				-1.3
4,091,382	-				-0.6
4,091,382	-				-0.9
4,091,385	+				+0.1
4,091,400	+				-0.2
4,091,406	+				-0.3
4,091,414	-				-1.8
4,091,414	-				-1.8
4,091,414	-				-0.9
4,091,417	+				-2.0
4,091,427	+				-0.5
4,091,427	+				-1.1
4,091,428	+				-1.8
4,091,428	+				+0.2
4,091,430	-				-2.1
4,091,442	+				-0.3
4,091,454	-				+0.4
4,091,454	-				-1.8
4,091,494	+				-2.2
4,091,494	+				+0.8
4,091,495	+				-0.9
4,091,502	-				-2.3
4,091,514	+				-0.5
4,091,524	+				+1.3
4,091,524	+				-0.3
4,091,527	-				-0.9
4,091,527	-				-0.2
4,091,542	+				+1.1
4,091,547	+				+0.3
4,091,552	+				-2.0
4,091,571	+				-0.9
4,091,579	-				+0.2
4,091,580	+				-0.6
4,091,580	+				+0.4
4,091,592	-				-1.3
4,091,592	-				-0.7
4,091,606	+				-0.6
4,091,611	+				-0.6
4,091,616	+				-0.2
4,091,624	+		GFF4080	0.10	-1.0
4,091,624	-		GFF4080	0.10	-0.1
4,091,624	-		GFF4080	0.10	+0.4
4,091,634	+		GFF4080	0.11	-0.1
4,091,634	+		GFF4080	0.11	-0.8
4,091,634	+		GFF4080	0.11	+0.2
4,091,634	+		GFF4080	0.11	-0.1
4,091,634	+		GFF4080	0.11	-0.7
4,091,637	-		GFF4080	0.11	-1.8
4,091,637	-		GFF4080	0.11	+0.7
4,091,642	-		GFF4080	0.11	-1.0
4,091,651	+		GFF4080	0.12	-0.5
4,091,653	+		GFF4080	0.12	+0.8
4,091,667	-		GFF4080	0.12	-0.5
4,091,694	-		GFF4080	0.14	+0.7
4,091,705	-		GFF4080	0.15	-1.6
4,091,707	-		GFF4080	0.15	-2.1
4,091,714	+		GFF4080	0.15	-0.4
4,091,722	+		GFF4080	0.16	-0.1
4,091,744	+		GFF4080	0.17	-1.4
4,091,765	+		GFF4080	0.18	-1.1
4,091,769	+		GFF4080	0.18	+0.3
4,091,770	+		GFF4080	0.18	-1.3
4,091,770	+		GFF4080	0.18	-1.4
4,091,773	-		GFF4080	0.18	-2.8
4,091,805	+		GFF4080	0.20	-1.3
4,091,809	-		GFF4080	0.20	-1.0
4,091,816	+		GFF4080	0.21	-0.0
4,091,859	-		GFF4080	0.23	+0.2
4,091,894	-		GFF4080	0.25	+0.5
4,091,901	+		GFF4080	0.26	+1.0
4,091,911	+		GFF4080	0.26	+0.6
4,091,912	+		GFF4080	0.26	+0.6
4,091,912	+		GFF4080	0.26	-2.1
4,091,920	-		GFF4080	0.27	-0.2
4,091,921	-		GFF4080	0.27	+0.4
4,091,935	+		GFF4080	0.28	-1.0
4,091,937	+		GFF4080	0.28	-0.0
4,091,941	-		GFF4080	0.28	+0.3
4,091,943	+		GFF4080	0.28	-0.5
4,091,953	-		GFF4080	0.29	-0.6
4,091,959	+		GFF4080	0.29	-1.1
4,091,966	-		GFF4080	0.29	-1.6
4,091,967	-		GFF4080	0.29	+0.7
4,091,973	+		GFF4080	0.30	-1.3
4,091,973	+		GFF4080	0.30	-0.1
4,091,978	-		GFF4080	0.30	-1.6
4,091,981	-		GFF4080	0.30	-1.8
4,091,990	-		GFF4080	0.31	-1.3
4,091,990	-		GFF4080	0.31	+0.8
4,092,000	-		GFF4080	0.31	+1.4
4,092,051	+		GFF4080	0.34	+0.5
4,092,061	+		GFF4080	0.35	-1.2
4,092,066	+		GFF4080	0.35	+0.5
4,092,069	-		GFF4080	0.35	+0.7
4,092,069	-		GFF4080	0.35	-0.5
4,092,071	+		GFF4080	0.35	-0.2
4,092,076	+		GFF4080	0.35	-0.7
4,092,076	+		GFF4080	0.35	+0.7
4,092,076	+		GFF4080	0.35	-0.0
4,092,076	+		GFF4080	0.35	-0.3
4,092,076	+		GFF4080	0.35	+0.0
4,092,080	-		GFF4080	0.36	+0.1
4,092,084	-		GFF4080	0.36	-2.4
4,092,122	+		GFF4080	0.38	-0.6
4,092,124	-		GFF4080	0.38	-0.4
4,092,124	-		GFF4080	0.38	+0.2
4,092,130	-		GFF4080	0.39	-0.0
4,092,144	-		GFF4080	0.39	-0.3
4,092,144	-		GFF4080	0.39	-0.6
4,092,148	+		GFF4080	0.40	+0.8
4,092,156	-		GFF4080	0.40	-1.4
4,092,166	+		GFF4080	0.41	+1.9
4,092,174	-		GFF4080	0.41	-0.2
4,092,191	+		GFF4080	0.42	-0.4
4,092,198	-		GFF4080	0.42	+0.2
4,092,229	+		GFF4080	0.44	+0.5
4,092,237	-		GFF4080	0.45	+0.0
4,092,265	-		GFF4080	0.46	-1.4
4,092,269	+		GFF4080	0.46	+0.7
4,092,275	+		GFF4080	0.47	-2.3
4,092,275	+		GFF4080	0.47	-1.0
4,092,283	-		GFF4080	0.47	+0.0
4,092,283	-		GFF4080	0.47	+1.1
4,092,287	+		GFF4080	0.47	-0.4
4,092,295	-		GFF4080	0.48	+0.7
4,092,313	+		GFF4080	0.49	-0.4
4,092,313	-		GFF4080	0.49	+0.5
4,092,340	+		GFF4080	0.50	+1.3
4,092,348	-		GFF4080	0.51	-2.0
4,092,354	+		GFF4080	0.51	-0.5
4,092,376	+		GFF4080	0.52	-0.6
4,092,379	-		GFF4080	0.53	+0.7
4,092,434	+		GFF4080	0.56	-0.2
4,092,438	+		GFF4080	0.56	-1.0
4,092,438	+		GFF4080	0.56	-2.6
4,092,438	+		GFF4080	0.56	-0.7
4,092,464	+		GFF4080	0.57	+0.6
4,092,472	-		GFF4080	0.58	-0.5
4,092,476	+		GFF4080	0.58	-0.2
4,092,476	+		GFF4080	0.58	+0.0
4,092,505	+		GFF4080	0.60	-1.1
4,092,505	+		GFF4080	0.60	+0.3
4,092,505	+		GFF4080	0.60	-2.2
4,092,505	+		GFF4080	0.60	-0.0
4,092,505	+		GFF4080	0.60	-1.0
4,092,505	+		GFF4080	0.60	-0.1
4,092,508	-		GFF4080	0.60	-0.1
4,092,508	-		GFF4080	0.60	+1.3
4,092,509	+		GFF4080	0.60	-1.3
4,092,513	-		GFF4080	0.60	-0.5
4,092,513	-		GFF4080	0.60	+0.0
4,092,513	-		GFF4080	0.60	-0.7
4,092,513	-		GFF4080	0.60	-0.6
4,092,538	+		GFF4080	0.61	-0.3
4,092,542	+		GFF4080	0.62	-0.7
4,092,550	-		GFF4080	0.62	+0.7
4,092,587	+		GFF4080	0.64	-0.8
4,092,596	-		GFF4080	0.65	-1.0
4,092,596	-		GFF4080	0.65	-0.9
4,092,606	-		GFF4080	0.65	-0.0
4,092,608	+		GFF4080	0.65	-1.3
4,092,635	+		GFF4080	0.67	+0.1
4,092,641	+		GFF4080	0.67	-0.7
4,092,641	+		GFF4080	0.67	-0.4
4,092,641	+		GFF4080	0.67	-0.0
4,092,641	+		GFF4080	0.67	-0.8
4,092,649	-		GFF4080	0.68	+0.5
4,092,649	-		GFF4080	0.68	-0.6
4,092,649	-		GFF4080	0.68	-2.1
4,092,649	-		GFF4080	0.68	+0.8
4,092,649	-		GFF4080	0.68	-0.3
4,092,653	+		GFF4080	0.68	-0.8
4,092,653	+		GFF4080	0.68	+0.0
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