Strain Fitness in Sphingobium sp. HT1-2 around GFF4045

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,058,030	-		GFF4042	0.48	-1.0
4,058,088	-		GFF4042	0.57	+0.1
4,058,093	+		GFF4042	0.58	+0.4
4,058,094	-		GFF4042	0.58	+0.7
4,058,095	-		GFF4042	0.58	-0.3
4,058,118	+		GFF4042	0.61	+0.2
4,058,118	+		GFF4042	0.61	+0.9
4,058,126	-		GFF4042	0.62	-0.1
4,058,138	+		GFF4042	0.64	+1.0
4,058,162	-		GFF4042	0.68	+1.5
4,058,172	-		GFF4042	0.69	-0.1
4,058,172	-		GFF4042	0.69	-0.9
4,058,176	-		GFF4042	0.70	-0.5
4,058,195	-		GFF4042	0.73	+1.2
4,058,204	+		GFF4042	0.74	+0.8
4,058,204	+		GFF4042	0.74	-1.3
4,058,217	-		GFF4042	0.76	-0.7
4,058,258	-		GFF4042	0.82	+0.3
4,058,258	-		GFF4042	0.82	-0.5
4,058,298	+		GFF4042	0.88	-0.5
4,058,316	-				-0.6
4,058,317	+				-0.6
4,058,319	+				+0.1
4,058,327	+				-1.9
4,058,335	-				-1.0
4,058,340	+				-0.8
4,058,382	+				+1.3
4,058,393	+				-0.6
4,058,423	-				-1.5
4,058,425	+				-0.8
4,058,443	+		GFF4043	0.13	-0.5
4,058,453	+		GFF4043	0.16	-2.5
4,058,453	+		GFF4043	0.16	+1.3
4,058,453	+		GFF4043	0.16	-0.1
4,058,456	-		GFF4043	0.17	-0.5
4,058,458	+		GFF4043	0.18	+0.8
4,058,458	+		GFF4043	0.18	+0.3
4,058,461	-		GFF4043	0.19	-0.8
4,058,461	-		GFF4043	0.19	+0.5
4,058,463	+		GFF4043	0.20	+0.5
4,058,471	-		GFF4043	0.22	+0.4
4,058,471	-		GFF4043	0.22	+0.0
4,058,474	+		GFF4043	0.23	-0.7
4,058,474	+		GFF4043	0.23	-0.5
4,058,474	+		GFF4043	0.23	+1.3
4,058,474	+		GFF4043	0.23	+1.3
4,058,482	-		GFF4043	0.26	-1.5
4,058,484	+		GFF4043	0.27	-1.5
4,058,541	-		GFF4043	0.46	-2.2
4,058,559	+		GFF4043	0.52	-0.3
4,058,559	+		GFF4043	0.52	-1.5
4,058,560	+		GFF4043	0.52	-0.7
4,058,560	+		GFF4043	0.52	+1.2
4,058,560	+		GFF4043	0.52	+0.6
4,058,560	+		GFF4043	0.52	+0.3
4,058,560	+		GFF4043	0.52	-0.0
4,058,560	+		GFF4043	0.52	+0.5
4,058,560	+		GFF4043	0.52	+0.2
4,058,560	+		GFF4043	0.52	+0.1
4,058,560	+		GFF4043	0.52	-1.0
4,058,560	+		GFF4043	0.52	-0.1
4,058,560	+		GFF4043	0.52	-0.4
4,058,560	+		GFF4043	0.52	+0.6
4,058,560	+		GFF4043	0.52	-0.3
4,058,560	+		GFF4043	0.52	-0.0
4,058,560	+		GFF4043	0.52	-2.7
4,058,560	+		GFF4043	0.52	-0.7
4,058,567	-		GFF4043	0.54	-0.7
4,058,568	-		GFF4043	0.55	+1.2
4,058,568	-		GFF4043	0.55	-1.2
4,058,568	-		GFF4043	0.55	-1.1
4,058,568	-		GFF4043	0.55	-0.8
4,058,568	-		GFF4043	0.55	+0.4
4,058,568	-		GFF4043	0.55	-1.0
4,058,568	-		GFF4043	0.55	+0.5
4,058,568	-		GFF4043	0.55	-0.7
4,058,568	-		GFF4043	0.55	+0.6
4,058,568	-		GFF4043	0.55	-0.0
4,058,588	+		GFF4043	0.61	+0.1
4,058,596	+		GFF4043	0.64	+0.3
4,058,604	+		GFF4043	0.67	-0.3
4,058,609	+		GFF4043	0.68	-0.2
4,058,610	-		GFF4043	0.69	-0.0
4,058,611	+		GFF4043	0.69	-0.7
4,058,617	-		GFF4043	0.71	-0.9
4,058,620	+		GFF4043	0.72	-0.3
4,058,677	+				-2.7
4,058,685	+				+0.2
4,058,686	+				-1.6
4,058,686	+				+0.1
4,058,705	-				+0.4
4,058,705	-				+0.5
4,058,712	+				+0.7
4,058,714	+				-2.2
4,058,722	-				+2.2
4,058,722	-				-0.5
4,058,722	-				-0.6
4,058,727	-				-1.4
4,058,727	-				-2.2
4,058,732	+				-0.2
4,058,740	+				-2.4
4,058,769	+				+0.3
4,058,774	+				-0.2
4,058,792	+				-0.7
4,058,799	+				-0.7
4,058,800	-				-1.3
4,058,800	-				+0.7
4,058,832	-		GFF4044	0.22	-1.0
4,058,871	-		GFF4044	0.37	-1.3
4,058,872	+		GFF4044	0.38	-1.1
4,058,872	+		GFF4044	0.38	+0.1
4,058,877	+		GFF4044	0.40	-0.2
4,058,879	+		GFF4044	0.40	-0.6
4,058,880	-		GFF4044	0.41	-0.8
4,058,880	-		GFF4044	0.41	+0.5
4,058,887	-		GFF4044	0.43	-1.7
4,058,887	-		GFF4044	0.43	+0.8
4,058,887	-		GFF4044	0.43	-2.7
4,058,889	+		GFF4044	0.44	-1.2
4,058,892	+		GFF4044	0.45	-1.1
4,058,961	+		GFF4044	0.72	+0.7
4,058,964	-		GFF4044	0.73	-1.8
4,058,966	+		GFF4044	0.74	+0.5
4,058,966	+		GFF4044	0.74	-0.3
4,058,966	+		GFF4044	0.74	-1.3
4,058,969	-		GFF4044	0.75	-1.6
4,058,969	-		GFF4044	0.75	-0.3
4,058,971	+		GFF4044	0.76	-0.9
4,058,971	+		GFF4044	0.76	+0.9
4,058,974	-		GFF4044	0.77	-1.8
4,058,974	-		GFF4044	0.77	-0.3
4,058,979	-		GFF4044	0.79	-1.7
4,058,984	+		GFF4044	0.81	-0.9
4,058,984	+		GFF4044	0.81	-0.8
4,058,984	+		GFF4044	0.81	-1.8
4,058,991	-		GFF4044	0.84	+0.7
4,058,992	-		GFF4044	0.84	-0.9
4,058,992	-		GFF4044	0.84	+1.2
4,058,992	-		GFF4044	0.84	-0.0
4,059,019	+				+0.0
4,059,021	-				-0.3
4,059,038	-				-0.9
4,059,048	+				-0.8
4,059,114	+		GFF4045	0.12	+0.9
4,059,114	+		GFF4045	0.12	-0.1
4,059,115	-		GFF4045	0.12	+0.8
4,059,122	-		GFF4045	0.13	-3.1
4,059,132	+		GFF4045	0.15	-0.3
4,059,133	-		GFF4045	0.15	-0.3
4,059,140	-		GFF4045	0.16	+0.6
4,059,145	+		GFF4045	0.17	-0.5
4,059,150	-		GFF4045	0.17	-0.8
4,059,177	+		GFF4045	0.21	-0.3
4,059,215	-		GFF4045	0.27	-0.6
4,059,217	+		GFF4045	0.27	+0.4
4,059,223	+		GFF4045	0.28	-1.3
4,059,229	+		GFF4045	0.29	-0.4
4,059,231	-		GFF4045	0.29	+0.4
4,059,237	-		GFF4045	0.30	-0.2
4,059,237	-		GFF4045	0.30	+1.0
4,059,237	-		GFF4045	0.30	-0.1
4,059,237	-		GFF4045	0.30	-0.3
4,059,247	+		GFF4045	0.31	-1.3
4,059,250	-		GFF4045	0.32	+0.3
4,059,255	-		GFF4045	0.32	+0.2
4,059,270	-		GFF4045	0.34	-0.2
4,059,281	+		GFF4045	0.36	-1.5
4,059,284	+		GFF4045	0.36	-0.5
4,059,305	+		GFF4045	0.39	+0.1
4,059,333	-		GFF4045	0.43	-2.5
4,059,359	+		GFF4045	0.47	-0.2
4,059,374	-		GFF4045	0.49	+0.4
4,059,374	-		GFF4045	0.49	-1.4
4,059,378	+		GFF4045	0.50	+0.2
4,059,400	+		GFF4045	0.53	+0.2
4,059,400	+		GFF4045	0.53	-0.5
4,059,400	+		GFF4045	0.53	+0.8
4,059,400	+		GFF4045	0.53	+0.1
4,059,400	+		GFF4045	0.53	-1.0
4,059,400	+		GFF4045	0.53	-0.8
4,059,400	+		GFF4045	0.53	-0.8
4,059,400	+		GFF4045	0.53	-1.9
4,059,403	-		GFF4045	0.54	-1.2
4,059,403	-		GFF4045	0.54	+0.0
4,059,405	+		GFF4045	0.54	-0.8
4,059,405	+		GFF4045	0.54	+0.7
4,059,405	+		GFF4045	0.54	+0.5
4,059,408	-		GFF4045	0.54	+1.3
4,059,408	-		GFF4045	0.54	+1.2
4,059,408	-		GFF4045	0.54	-2.3
4,059,408	-		GFF4045	0.54	-1.0
4,059,413	-		GFF4045	0.55	-0.9
4,059,419	+		GFF4045	0.56	+0.2
4,059,430	+		GFF4045	0.57	-1.0
4,059,438	-		GFF4045	0.59	-1.1
4,059,458	-		GFF4045	0.61	-0.8
4,059,473	+		GFF4045	0.64	-0.7
4,059,495	+		GFF4045	0.67	-0.7
4,059,503	-		GFF4045	0.68	-0.0
4,059,508	+		GFF4045	0.69	+0.1
4,059,516	-		GFF4045	0.70	-0.7
4,059,516	-		GFF4045	0.70	-0.4
4,059,528	+		GFF4045	0.71	-1.0
4,059,529	+		GFF4045	0.72	-1.1
4,059,538	+		GFF4045	0.73	-1.0
4,059,547	+		GFF4045	0.74	-0.1
4,059,555	+		GFF4045	0.75	-0.8
4,059,574	-		GFF4045	0.78	-0.4
4,059,625	+		GFF4045	0.85	+0.3
4,059,626	-		GFF4045	0.85	-0.3
4,059,633	-		GFF4045	0.86	-1.9
4,059,716	+				-2.7
4,059,716	+				+0.7
4,059,726	+				+0.3
4,059,731	+				-2.0
4,059,767	+				-1.9
4,059,773	-				-0.3
4,059,780	+				+0.0
4,059,788	-				-0.1
4,059,806	-				-1.2
4,059,844	+		GFF4046	0.11	+0.5
4,059,852	-		GFF4046	0.12	-1.3
4,059,859	-		GFF4046	0.13	+0.7
4,059,859	-		GFF4046	0.13	+0.4
4,059,859	-		GFF4046	0.13	+0.1
4,059,898	+		GFF4046	0.17	-1.3
4,059,955	+		GFF4046	0.23	+0.7
4,059,961	+		GFF4046	0.23	+0.3
4,060,004	+		GFF4046	0.28	-0.6
4,060,011	+		GFF4046	0.28	-1.3
4,060,011	+		GFF4046	0.28	-0.2
4,060,012	-		GFF4046	0.28	-1.3
4,060,012	-		GFF4046	0.28	+0.4
4,060,014	+		GFF4046	0.29	-0.4
4,060,028	-		GFF4046	0.30	+0.5
4,060,030	+		GFF4046	0.30	+1.2
4,060,030	+		GFF4046	0.30	-0.4
4,060,030	+		GFF4046	0.30	+1.7
4,060,030	+		GFF4046	0.30	-0.1
4,060,030	+		GFF4046	0.30	-1.2
4,060,030	+		GFF4046	0.30	-2.2
4,060,030	+		GFF4046	0.30	+0.5
4,060,038	-		GFF4046	0.31	-2.2
4,060,038	-		GFF4046	0.31	-0.3
4,060,038	-		GFF4046	0.31	-0.4
4,060,038	-		GFF4046	0.31	+0.4
4,060,046	+		GFF4046	0.32	+1.0
4,060,051	+		GFF4046	0.32	+1.1
4,060,051	+		GFF4046	0.32	-0.2
4,060,051	+		GFF4046	0.32	-1.5
4,060,051	+		GFF4046	0.32	+0.2
4,060,051	+		GFF4046	0.32	+0.3
4,060,051	+		GFF4046	0.32	-2.0
4,060,059	-		GFF4046	0.33	+0.8
4,060,059	-		GFF4046	0.33	+0.3
4,060,059	-		GFF4046	0.33	-1.5
4,060,059	-		GFF4046	0.33	-0.8
4,060,059	-		GFF4046	0.33	-0.0
4,060,059	-		GFF4046	0.33	+0.1
4,060,059	-		GFF4046	0.33	-0.4
4,060,059	-		GFF4046	0.33	+0.2
4,060,089	+		GFF4046	0.36	+1.1
4,060,090	+		GFF4046	0.36	+0.4
4,060,128	+		GFF4046	0.40	-0.4
4,060,128	-		GFF4046	0.40	+1.0
4,060,139	-		GFF4046	0.41	-1.3
4,060,189	-		GFF4046	0.46	+0.9
4,060,200	+		GFF4046	0.48	-0.3
4,060,200	+		GFF4046	0.48	+1.6
4,060,200	+		GFF4046	0.48	+0.5
4,060,200	+		GFF4046	0.48	+0.0
4,060,205	+		GFF4046	0.48	-1.8
4,060,205	+		GFF4046	0.48	-0.8
4,060,205	+		GFF4046	0.48	+0.2
4,060,205	+		GFF4046	0.48	-2.1
4,060,205	+		GFF4046	0.48	-1.4
4,060,205	+		GFF4046	0.48	+1.2
4,060,213	-		GFF4046	0.49	-0.3
4,060,213	-		GFF4046	0.49	+0.8
4,060,213	-		GFF4046	0.49	+0.9
4,060,213	-		GFF4046	0.49	-1.2
4,060,213	-		GFF4046	0.49	+0.4
4,060,213	-		GFF4046	0.49	-0.7
4,060,213	-		GFF4046	0.49	+0.3
4,060,217	+		GFF4046	0.49	-0.6
4,060,222	+		GFF4046	0.50	+1.5
4,060,222	+		GFF4046	0.50	-1.5
4,060,223	-		GFF4046	0.50	+0.6
4,060,230	-		GFF4046	0.51	-1.5
4,060,230	-		GFF4046	0.51	-0.2
4,060,230	-		GFF4046	0.51	-1.4
4,060,247	+		GFF4046	0.52	-0.1
4,060,249	-		GFF4046	0.52	-1.2
4,060,255	-		GFF4046	0.53	+0.6
4,060,255	-		GFF4046	0.53	-1.2
4,060,258	+		GFF4046	0.53	-0.5
4,060,258	+		GFF4046	0.53	-0.3
4,060,266	-		GFF4046	0.54	+0.3
4,060,266	-		GFF4046	0.54	-1.4
4,060,266	-		GFF4046	0.54	+0.3
4,060,268	+		GFF4046	0.54	+0.4
4,060,276	-		GFF4046	0.55	-0.1
4,060,277	-		GFF4046	0.55	-1.7
4,060,285	-		GFF4046	0.56	+0.2
4,060,291	+		GFF4046	0.57	+1.3
4,060,293	-		GFF4046	0.57	-1.5
4,060,299	-		GFF4046	0.58	+0.7
4,060,316	+		GFF4046	0.59	-0.6
4,060,327	+		GFF4046	0.60	+0.8
4,060,335	-		GFF4046	0.61	-0.6
4,060,335	-		GFF4046	0.61	-0.2
4,060,342	+		GFF4046	0.62	+0.3
4,060,343	-		GFF4046	0.62	+0.5
4,060,348	+		GFF4046	0.63	+1.0
4,060,349	+		GFF4046	0.63	+0.1
4,060,350	-		GFF4046	0.63	-0.9
4,060,356	-		GFF4046	0.63	+0.4
4,060,374	+		GFF4046	0.65	-1.0
4,060,374	-		GFF4046	0.65	-0.2
4,060,387	-		GFF4046	0.67	-0.6
4,060,406	+		GFF4046	0.69	-1.1
4,060,457	+		GFF4046	0.74	-0.5
4,060,480	+		GFF4046	0.76	+0.5
4,060,505	+		GFF4046	0.79	+0.2
4,060,510	+		GFF4046	0.79	+0.2
4,060,515	-		GFF4046	0.80	+0.2
4,060,518	+		GFF4046	0.80	+0.0
4,060,533	+		GFF4046	0.81	+0.8
4,060,563	+		GFF4046	0.85	+0.8
4,060,563	+		GFF4046	0.85	+1.0
4,060,571	-		GFF4046	0.85	-0.1
4,060,590	-		GFF4046	0.87	+0.3
4,060,597	-		GFF4046	0.88	+0.3
4,060,604	+		GFF4046	0.89	+1.2
4,060,604	+		GFF4046	0.89	+0.8
4,060,604	+		GFF4046	0.89	-0.7
4,060,604	+		GFF4046	0.89	+0.8
4,060,604	+		GFF4046	0.89	-0.2
4,060,604	+		GFF4046	0.89	+0.7
4,060,604	+		GFF4046	0.89	-0.1
4,060,604	+		GFF4046	0.89	+1.7
4,060,610	+		GFF4046	0.89	+1.2
4,060,612	-		GFF4046	0.90	+0.8
4,060,612	-		GFF4046	0.90	+0.6
4,060,612	-		GFF4046	0.90	+0.2
4,060,612	-		GFF4046	0.90	+0.3
4,060,612	-		GFF4046	0.90	+1.2
4,060,612	-		GFF4046	0.90	+0.6
4,060,612	-		GFF4046	0.90	+1.5
4,060,612	-		GFF4046	0.90	+1.2
4,060,618	-				+0.6
4,060,618	-				+1.0
4,060,618	-				+0.9
4,060,627	+				+0.3
4,060,629	-				+0.7
4,060,632	+				+0.4
4,060,632	+				+0.8
4,060,632	+				+0.1
4,060,632	+				+0.9
4,060,640	-				+0.5
4,060,640	-				-0.1
4,060,640	-				+0.6
4,060,640	-				+0.7
4,060,645	+				+0.0
4,060,656	+				+0.6
4,060,657	-				+0.5
4,060,657	-				+1.2
4,060,668	+				+1.0
4,060,668	+				+1.1
4,060,669	+				+0.4
4,060,669	+				+0.4
4,060,677	-				+0.8
4,060,677	-				+0.9
4,060,680	+				+0.6
4,060,688	-				+0.9
4,060,688	-				+0.8
4,060,688	-				+1.0
4,060,694	-				-1.6