Strain Fitness in Sphingobium sp. HT1-2 around GFF4008

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,036,767	-				-0.2
4,036,809	-				-0.4
4,036,810	-				-0.3
4,036,814	+				-2.2
4,036,824	+				+1.9
4,036,824	+				-0.7
4,036,830	-				-0.6
4,036,832	-				-0.6
4,036,865	-				-1.4
4,036,887	+				+0.5
4,036,899	+				+0.3
4,036,899	+				-0.5
4,036,901	+				+0.3
4,036,901	+				-2.5
4,036,907	-				-1.1
4,036,909	-				-0.4
4,036,914	+				+0.3
4,036,915	+				-1.4
4,036,915	+				-0.1
4,036,915	+				-1.0
4,036,920	-				+1.6
4,036,922	-				+0.2
4,036,930	+				-0.8
4,036,930	+				-0.7
4,036,938	-		GFF4006	0.11	+0.4
4,036,938	-		GFF4006	0.11	-0.3
4,036,938	-		GFF4006	0.11	-2.5
4,036,945	+		GFF4006	0.12	+0.8
4,036,947	+		GFF4006	0.12	+0.7
4,036,947	+		GFF4006	0.12	-0.5
4,036,947	+		GFF4006	0.12	-1.9
4,036,948	-		GFF4006	0.12	-1.5
4,036,955	-		GFF4006	0.14	-0.2
4,036,962	+		GFF4006	0.15	-0.3
4,036,962	+		GFF4006	0.15	+0.4
4,036,962	+		GFF4006	0.15	+0.9
4,036,962	+		GFF4006	0.15	-0.8
4,036,970	-		GFF4006	0.16	-1.5
4,037,040	+		GFF4006	0.26	-0.2
4,037,040	+		GFF4006	0.26	-0.2
4,037,040	+		GFF4006	0.26	+0.3
4,037,040	+		GFF4006	0.26	-0.9
4,037,040	+		GFF4006	0.26	+0.6
4,037,040	+		GFF4006	0.26	-1.4
4,037,040	+		GFF4006	0.26	+0.3
4,037,040	+		GFF4006	0.26	-0.6
4,037,047	+		GFF4006	0.27	-1.5
4,037,047	+		GFF4006	0.27	+0.1
4,037,047	-		GFF4006	0.27	-0.5
4,037,047	-		GFF4006	0.27	-1.0
4,037,047	-		GFF4006	0.27	-1.8
4,037,047	-		GFF4006	0.27	-0.1
4,037,048	-		GFF4006	0.27	-0.2
4,037,048	-		GFF4006	0.27	-0.3
4,037,048	-		GFF4006	0.27	-0.8
4,037,048	-		GFF4006	0.27	-2.1
4,037,055	-		GFF4006	0.28	+0.2
4,037,055	-		GFF4006	0.28	-0.5
4,037,055	-		GFF4006	0.28	-1.5
4,037,055	-		GFF4006	0.28	-2.1
4,037,055	-		GFF4006	0.28	+0.2
4,037,065	+		GFF4006	0.30	+0.9
4,037,082	-		GFF4006	0.32	-2.0
4,037,084	-		GFF4006	0.33	-0.8
4,037,122	+		GFF4006	0.38	-0.2
4,037,122	+		GFF4006	0.38	+0.0
4,037,122	+		GFF4006	0.38	-0.6
4,037,130	+		GFF4006	0.40	-0.1
4,037,130	+		GFF4006	0.40	+0.8
4,037,130	-		GFF4006	0.40	+0.5
4,037,137	+		GFF4006	0.41	-0.6
4,037,138	-		GFF4006	0.41	-1.4
4,037,138	-		GFF4006	0.41	+0.5
4,037,143	+		GFF4006	0.42	-0.2
4,037,151	-		GFF4006	0.43	+0.9
4,037,151	-		GFF4006	0.43	-1.9
4,037,151	-		GFF4006	0.43	-1.1
4,037,177	+		GFF4006	0.47	-0.3
4,037,190	+		GFF4006	0.49	+0.3
4,037,198	-		GFF4006	0.50	-1.6
4,037,223	-		GFF4006	0.53	-0.6
4,037,224	+		GFF4006	0.54	-1.6
4,037,224	+		GFF4006	0.54	+0.1
4,037,224	+		GFF4006	0.54	+0.9
4,037,224	+		GFF4006	0.54	-0.2
4,037,232	-		GFF4006	0.55	-0.1
4,037,244	+		GFF4006	0.57	-0.1
4,037,255	-		GFF4006	0.58	-0.6
4,037,263	+		GFF4006	0.59	+0.5
4,037,272	+		GFF4006	0.61	+0.5
4,037,278	+		GFF4006	0.62	+0.1
4,037,282	+		GFF4006	0.62	-1.2
4,037,290	-		GFF4006	0.63	-0.3
4,037,290	-		GFF4006	0.63	+0.4
4,037,299	-		GFF4006	0.65	-1.0
4,037,302	+		GFF4006	0.65	+0.8
4,037,308	-		GFF4006	0.66	-1.3
4,037,310	-		GFF4006	0.66	+0.3
4,037,310	-		GFF4006	0.66	-0.2
4,037,314	+		GFF4006	0.67	+0.1
4,037,319	+		GFF4006	0.68	-1.0
4,037,319	+		GFF4006	0.68	+0.1
4,037,319	+		GFF4006	0.68	+0.1
4,037,327	-		GFF4006	0.69	-0.4
4,037,327	-		GFF4006	0.69	-2.5
4,037,327	-		GFF4006	0.69	-0.4
4,037,327	-		GFF4006	0.69	+0.2
4,037,350	-		GFF4006	0.72	-0.6
4,037,352	+		GFF4006	0.73	-0.8
4,037,360	-		GFF4006	0.74	+1.3
4,037,360	-		GFF4006	0.74	+0.5
4,037,368	-		GFF4006	0.75	-0.3
4,037,375	+		GFF4006	0.76	-0.6
4,037,378	-		GFF4006	0.76	+1.4
4,037,378	-		GFF4006	0.76	-1.9
4,037,383	-		GFF4006	0.77	-0.5
4,037,410	-		GFF4006	0.81	-0.5
4,037,445	-		GFF4006	0.86	-2.2
4,037,456	+		GFF4006	0.88	-0.3
4,037,462	+		GFF4006	0.89	-0.2
4,037,470	-				-1.5
4,037,474	+				-1.4
4,037,482	+				+0.9
4,037,507	+				-0.3
4,037,550	+				+1.8
4,037,552	+		GFF4007	0.10	+0.2
4,037,566	+		GFF4007	0.17	-0.4
4,037,566	+		GFF4007	0.17	+0.1
4,037,566	+		GFF4007	0.17	+1.5
4,037,587	+		GFF4007	0.28	+0.1
4,037,587	+		GFF4007	0.28	-0.7
4,037,587	+		GFF4007	0.28	+0.6
4,037,593	+		GFF4007	0.31	-0.4
4,037,595	-		GFF4007	0.32	+0.4
4,037,595	-		GFF4007	0.32	-0.3
4,037,595	-		GFF4007	0.32	-0.9
4,037,595	-		GFF4007	0.32	-1.2
4,037,610	+		GFF4007	0.40	-1.5
4,037,610	+		GFF4007	0.40	+0.1
4,037,610	+		GFF4007	0.40	-0.7
4,037,610	+		GFF4007	0.40	+0.2
4,037,610	+		GFF4007	0.40	-0.4
4,037,610	+		GFF4007	0.40	-0.6
4,037,610	+		GFF4007	0.40	-0.9
4,037,610	+		GFF4007	0.40	+0.4
4,037,616	-		GFF4007	0.43	-2.3
4,037,618	-		GFF4007	0.44	+0.3
4,037,618	-		GFF4007	0.44	-0.4
4,037,618	-		GFF4007	0.44	+0.2
4,037,618	-		GFF4007	0.44	-2.3
4,037,618	-		GFF4007	0.44	-0.9
4,037,618	-		GFF4007	0.44	+0.9
4,037,665	+		GFF4007	0.68	-1.6
4,037,665	+		GFF4007	0.68	+0.0
4,037,680	-		GFF4007	0.76	-0.7
4,037,680	-		GFF4007	0.76	-0.5
4,037,685	-		GFF4007	0.78	+0.5
4,037,693	-		GFF4007	0.83	-0.3
4,037,693	-		GFF4007	0.83	-0.2
4,037,708	+				-1.2
4,037,711	-				-0.6
4,037,716	-				-0.9
4,037,723	+				+0.2
4,037,735	+				-0.8
4,037,764	+		GFF4008	0.25	+0.6
4,037,777	-		GFF4008	0.33	+1.1
4,037,781	+		GFF4008	0.36	-0.2
4,037,789	-		GFF4008	0.41	+0.0
4,037,791	+		GFF4008	0.42	-0.3
4,037,791	+		GFF4008	0.42	-0.8
4,037,791	+		GFF4008	0.42	+0.1
4,037,791	+		GFF4008	0.42	-1.4
4,037,791	+		GFF4008	0.42	+0.8
4,037,791	+		GFF4008	0.42	-0.8
4,037,791	+		GFF4008	0.42	-1.8
4,037,791	+		GFF4008	0.42	-0.1
4,037,791	+		GFF4008	0.42	-0.2
4,037,799	-		GFF4008	0.48	-0.8
4,037,799	-		GFF4008	0.48	-0.0
4,037,799	-		GFF4008	0.48	+0.9
4,037,799	-		GFF4008	0.48	-0.1
4,037,799	-		GFF4008	0.48	+0.7
4,037,799	-		GFF4008	0.48	+1.3
4,037,799	-		GFF4008	0.48	+0.2
4,037,799	-		GFF4008	0.48	-0.5
4,037,799	-		GFF4008	0.48	+0.6
4,037,799	-		GFF4008	0.48	-0.5
4,037,799	-		GFF4008	0.48	+0.2
4,037,799	-		GFF4008	0.48	+0.8
4,037,816	+		GFF4008	0.59	-1.4
4,037,829	+		GFF4008	0.67	-0.1
4,037,851	+		GFF4008	0.82	+0.7
4,037,862	+		GFF4008	0.89	-1.6
4,037,886	+				+1.2
4,037,894	-				+0.6
4,037,917	+				-1.3
4,037,925	-				-0.1
4,037,933	+				-0.7
4,037,955	+				-1.1
4,037,958	-				-2.4
4,037,963	-				+0.8
4,037,969	+				-1.2
4,037,969	+				-1.4
4,037,977	-				+0.3
4,037,978	-				+0.6
4,037,978	-				+2.4
4,037,980	+				-1.0
4,038,006	-				+0.8
4,038,006	-				+0.4
4,038,053	-				-0.3
4,038,063	+				-0.2
4,038,071	-				-0.7
4,038,076	-				+0.2
4,038,156	+		GFF4009	0.21	-0.2
4,038,171	+		GFF4009	0.23	+0.1
4,038,179	-		GFF4009	0.25	+0.3
4,038,181	-		GFF4009	0.25	-0.6
4,038,183	+		GFF4009	0.25	-0.5
4,038,183	+		GFF4009	0.25	+0.5
4,038,183	-		GFF4009	0.25	-0.5
4,038,191	-		GFF4009	0.27	+0.8
4,038,191	-		GFF4009	0.27	+0.1
4,038,192	+		GFF4009	0.27	+0.2
4,038,200	-		GFF4009	0.28	+0.2
4,038,200	-		GFF4009	0.28	+1.4
4,038,208	+		GFF4009	0.30	-0.0
4,038,229	+		GFF4009	0.33	-0.5
4,038,229	+		GFF4009	0.33	-0.2
4,038,237	-		GFF4009	0.34	+0.7
4,038,237	-		GFF4009	0.34	-1.1
4,038,237	-		GFF4009	0.34	-0.1
4,038,237	-		GFF4009	0.34	-1.2
4,038,246	+		GFF4009	0.36	+0.6
4,038,254	+		GFF4009	0.37	-0.8
4,038,283	-		GFF4009	0.42	+0.3
4,038,291	-		GFF4009	0.43	-1.7
4,038,294	+		GFF4009	0.44	+0.3
4,038,294	+		GFF4009	0.44	+0.4
4,038,294	+		GFF4009	0.44	-0.3
4,038,294	+		GFF4009	0.44	+0.4
4,038,299	+		GFF4009	0.45	-1.2
4,038,302	-		GFF4009	0.45	+0.2
4,038,307	-		GFF4009	0.46	+0.3
4,038,313	+		GFF4009	0.47	-1.4
4,038,320	+		GFF4009	0.48	-0.8
4,038,321	-		GFF4009	0.48	+0.2
4,038,321	-		GFF4009	0.48	-1.6
4,038,328	-		GFF4009	0.49	-0.7
4,038,337	+		GFF4009	0.51	-0.2
4,038,362	+		GFF4009	0.55	-0.0
4,038,370	-		GFF4009	0.56	+0.7
4,038,370	-		GFF4009	0.56	-0.1
4,038,372	-		GFF4009	0.57	-0.2
4,038,381	+		GFF4009	0.58	-0.9
4,038,381	+		GFF4009	0.58	-1.3
4,038,381	+		GFF4009	0.58	+0.1
4,038,394	-		GFF4009	0.60	+0.6
4,038,420	-		GFF4009	0.65	-0.2
4,038,425	-		GFF4009	0.65	+0.5
4,038,427	+		GFF4009	0.66	+0.4
4,038,427	+		GFF4009	0.66	-1.3
4,038,427	+		GFF4009	0.66	-0.7
4,038,435	-		GFF4009	0.67	-0.7
4,038,442	+		GFF4009	0.68	-1.2
4,038,477	+		GFF4009	0.74	-1.0
4,038,477	+		GFF4009	0.74	+0.9
4,038,477	+		GFF4009	0.74	-1.1
4,038,477	+		GFF4009	0.74	-0.5
4,038,477	+		GFF4009	0.74	+0.4
4,038,477	+		GFF4009	0.74	+1.0
4,038,478	-		GFF4009	0.74	-1.6
4,038,478	-		GFF4009	0.74	+0.0
4,038,478	-		GFF4009	0.74	-0.4
4,038,485	+		GFF4009	0.75	-0.2
4,038,485	+		GFF4009	0.75	-0.4
4,038,485	-		GFF4009	0.75	-0.4
4,038,485	-		GFF4009	0.75	-0.2
4,038,500	+		GFF4009	0.78	+0.4
4,038,503	+		GFF4009	0.78	-0.8
4,038,507	-		GFF4009	0.79	-1.5
4,038,508	-		GFF4009	0.79	+0.2
4,038,508	-		GFF4009	0.79	+0.4
4,038,525	+		GFF4009	0.82	+0.6
4,038,525	+		GFF4009	0.82	+0.8
4,038,525	+		GFF4009	0.82	-0.9
4,038,525	+		GFF4009	0.82	-0.3
4,038,526	+		GFF4009	0.82	-0.2
4,038,528	-		GFF4009	0.82	+1.2
4,038,528	-		GFF4009	0.82	+0.2
4,038,533	-		GFF4009	0.83	-1.3
4,038,533	-		GFF4009	0.83	-0.1
4,038,534	-		GFF4009	0.83	-0.5
4,038,536	+		GFF4009	0.84	-2.0
4,038,536	+		GFF4009	0.84	-0.8
4,038,536	+		GFF4009	0.84	-0.7
4,038,536	+		GFF4009	0.84	+0.4
4,038,542	-		GFF4009	0.85	-1.5
4,038,544	-		GFF4009	0.85	+0.0
4,038,544	-		GFF4009	0.85	+1.6
4,038,544	-		GFF4009	0.85	-4.2
4,038,544	-		GFF4009	0.85	+0.1
4,038,583	-				-0.8
4,038,596	-				+0.2
4,038,597	+				+0.7
4,038,597	+				-1.0
4,038,597	+				+0.4
4,038,597	+				-0.5
4,038,597	+				-0.1
4,038,597	+				-1.4
4,038,597	+				-0.5
4,038,597	+				-0.2
4,038,597	+				+0.2
4,038,597	+				+0.7
4,038,605	+				-0.1
4,038,605	-				-1.3
4,038,605	-				-1.2
4,038,605	-				-1.9
4,038,605	-				-1.4
4,038,632	-				+0.6
4,038,635	+				+1.0
4,038,648	-				-0.3
4,038,658	+				-0.3
4,038,658	+				+0.5
4,038,663	+				-0.7
4,038,674	+				+0.5
4,038,678	-				+0.2
4,038,685	+		GFF4010	0.11	+0.4
4,038,688	+		GFF4010	0.11	-1.0
4,038,689	-		GFF4010	0.11	+0.6
4,038,703	-		GFF4010	0.13	-0.7
4,038,726	+		GFF4010	0.17	+1.1
4,038,734	-		GFF4010	0.18	+0.0
4,038,736	+		GFF4010	0.18	-0.3
4,038,736	+		GFF4010	0.18	-0.6
4,038,743	+		GFF4010	0.19	-2.8
4,038,744	-		GFF4010	0.19	-2.4
4,038,756	-		GFF4010	0.21	-0.3
4,038,756	-		GFF4010	0.21	-0.5
4,038,762	-		GFF4010	0.22	-0.9
4,038,769	+		GFF4010	0.23	-0.3
4,038,843	+		GFF4010	0.34	+0.4
4,038,867	-		GFF4010	0.37	-0.1
4,038,878	-		GFF4010	0.39	-1.7