Strain Fitness in Sphingobium sp. HT1-2 around GFF3947

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,985,414	-		GFF3946	0.67	-1.4
3,985,417	-		GFF3946	0.67	+0.4
3,985,431	+		GFF3946	0.67	-1.2
3,985,431	+		GFF3946	0.67	-0.8
3,985,433	-		GFF3946	0.67	+0.3
3,985,433	-		GFF3946	0.67	-0.2
3,985,435	+		GFF3946	0.68	-0.4
3,985,435	+		GFF3946	0.68	+0.4
3,985,439	-		GFF3946	0.68	-0.0
3,985,443	-		GFF3946	0.68	-0.5
3,985,443	-		GFF3946	0.68	-1.4
3,985,443	-		GFF3946	0.68	-1.5
3,985,443	-		GFF3946	0.68	-1.1
3,985,443	-		GFF3946	0.68	-0.2
3,985,443	-		GFF3946	0.68	+0.4
3,985,443	-		GFF3946	0.68	+1.2
3,985,443	-		GFF3946	0.68	+1.3
3,985,460	-		GFF3946	0.68	-1.5
3,985,471	+		GFF3946	0.69	+0.5
3,985,471	+		GFF3946	0.69	+1.2
3,985,471	+		GFF3946	0.69	+0.4
3,985,471	+		GFF3946	0.69	-1.7
3,985,471	+		GFF3946	0.69	-1.9
3,985,471	+		GFF3946	0.69	-1.0
3,985,471	+		GFF3946	0.69	-1.6
3,985,471	+		GFF3946	0.69	+0.5
3,985,471	+		GFF3946	0.69	-0.7
3,985,471	+		GFF3946	0.69	-0.2
3,985,471	+		GFF3946	0.69	+0.9
3,985,479	-		GFF3946	0.69	+0.7
3,985,479	-		GFF3946	0.69	-0.6
3,985,479	-		GFF3946	0.69	-0.3
3,985,479	-		GFF3946	0.69	-0.3
3,985,479	-		GFF3946	0.69	-0.2
3,985,489	+		GFF3946	0.69	-0.7
3,985,502	-		GFF3946	0.70	+1.4
3,985,526	+		GFF3946	0.71	-0.6
3,985,538	+		GFF3946	0.71	+2.3
3,985,540	+		GFF3946	0.71	-0.2
3,985,543	+		GFF3946	0.71	+0.7
3,985,546	-		GFF3946	0.71	+1.2
3,985,573	+		GFF3946	0.72	+0.3
3,985,573	+		GFF3946	0.72	-0.4
3,985,573	+		GFF3946	0.72	+0.4
3,985,573	+		GFF3946	0.72	+0.7
3,985,573	-		GFF3946	0.72	-0.4
3,985,581	-		GFF3946	0.73	-1.9
3,985,585	+		GFF3946	0.73	-2.6
3,985,620	+		GFF3946	0.74	+0.4
3,985,621	-		GFF3946	0.74	-0.7
3,985,628	-		GFF3946	0.74	-1.3
3,985,632	+		GFF3946	0.74	-1.8
3,985,640	-		GFF3946	0.75	-0.3
3,985,684	+		GFF3946	0.76	-1.6
3,985,684	+		GFF3946	0.76	-1.3
3,985,684	+		GFF3946	0.76	-1.4
3,985,684	+		GFF3946	0.76	+0.4
3,985,684	+		GFF3946	0.76	+0.3
3,985,684	+		GFF3946	0.76	+0.9
3,985,684	+		GFF3946	0.76	+0.4
3,985,684	+		GFF3946	0.76	-0.3
3,985,684	+		GFF3946	0.76	-0.5
3,985,684	+		GFF3946	0.76	+0.3
3,985,684	+		GFF3946	0.76	-1.7
3,985,684	+		GFF3946	0.76	-2.4
3,985,689	+		GFF3946	0.76	-0.5
3,985,692	-		GFF3946	0.76	-0.5
3,985,692	-		GFF3946	0.76	+0.5
3,985,692	-		GFF3946	0.76	-0.9
3,985,692	-		GFF3946	0.76	-1.6
3,985,692	-		GFF3946	0.76	-0.0
3,985,692	-		GFF3946	0.76	-0.9
3,985,730	-		GFF3946	0.78	-0.7
3,985,733	+		GFF3946	0.78	-0.2
3,985,743	+		GFF3946	0.78	+0.1
3,985,751	-		GFF3946	0.78	-0.9
3,985,752	+		GFF3946	0.79	+0.3
3,985,774	+		GFF3946	0.79	+0.7
3,985,775	+		GFF3946	0.79	-1.7
3,985,780	+		GFF3946	0.79	+0.6
3,985,788	-		GFF3946	0.80	-0.7
3,985,794	+		GFF3946	0.80	-2.7
3,985,814	-		GFF3946	0.81	-1.5
3,985,834	+		GFF3946	0.81	+0.4
3,985,843	-		GFF3946	0.82	-2.5
3,985,844	+		GFF3946	0.82	-1.3
3,985,850	+		GFF3946	0.82	-1.3
3,985,850	+		GFF3946	0.82	+0.6
3,985,850	+		GFF3946	0.82	-0.0
3,985,850	+		GFF3946	0.82	-1.9
3,985,850	+		GFF3946	0.82	+0.9
3,985,850	+		GFF3946	0.82	-1.5
3,985,850	+		GFF3946	0.82	+1.0
3,985,850	+		GFF3946	0.82	-0.7
3,985,850	+		GFF3946	0.82	+0.2
3,985,858	-		GFF3946	0.82	-0.5
3,985,858	-		GFF3946	0.82	-0.1
3,985,858	-		GFF3946	0.82	+0.7
3,985,858	-		GFF3946	0.82	+1.0
3,985,883	-		GFF3946	0.83	+0.1
3,985,883	-		GFF3946	0.83	-0.1
3,985,883	-		GFF3946	0.83	-0.5
3,985,885	+		GFF3946	0.83	-1.7
3,985,885	+		GFF3946	0.83	+1.6
3,985,885	+		GFF3946	0.83	-0.4
3,985,885	+		GFF3946	0.83	-1.8
3,985,885	+		GFF3946	0.83	+0.3
3,985,893	-		GFF3946	0.83	+0.6
3,985,893	-		GFF3946	0.83	+0.4
3,985,893	-		GFF3946	0.83	-1.0
3,985,893	-		GFF3946	0.83	-0.6
3,985,921	+		GFF3946	0.84	-1.1
3,985,929	-		GFF3946	0.85	+0.9
3,985,939	-		GFF3946	0.85	-1.0
3,985,959	-		GFF3946	0.86	-0.2
3,985,981	-		GFF3946	0.86	-0.1
3,985,985	+		GFF3946	0.87	+0.1
3,985,985	+		GFF3946	0.87	-0.4
3,985,985	+		GFF3946	0.87	+0.5
3,985,985	+		GFF3946	0.87	-1.3
3,986,022	+		GFF3946	0.88	-0.0
3,986,052	+		GFF3946	0.89	-0.4
3,986,104	+				+1.4
3,986,111	+				-0.1
3,986,112	-				-0.3
3,986,112	-				+0.1
3,986,116	+				-0.0
3,986,147	-				-1.4
3,986,166	-				+0.5
3,986,173	+				+0.6
3,986,191	+				+1.0
3,986,196	+				+0.3
3,986,206	+				-0.9
3,986,206	+				-0.0
3,986,206	+				-0.9
3,986,206	+				-0.7
3,986,213	+				-1.5
3,986,214	-				-2.3
3,986,214	-				-0.4
3,986,220	+				+0.6
3,986,220	+				-0.8
3,986,222	-				-0.6
3,986,232	+				+0.6
3,986,235	+				-1.1
3,986,240	-				+0.1
3,986,245	-				-0.7
3,986,254	-				-1.4
3,986,261	-				-1.4
3,986,264	+				+0.5
3,986,267	-				+0.1
3,986,269	+				-0.6
3,986,269	+				-0.5
3,986,269	+				-1.7
3,986,269	+				-1.5
3,986,274	+				+0.2
3,986,274	+				+0.3
3,986,274	+				-0.4
3,986,274	+				-1.4
3,986,282	-				-0.5
3,986,323	+				-0.9
3,986,326	-				-0.7
3,986,334	+				-0.8
3,986,334	+				+0.0
3,986,334	+				-0.4
3,986,350	+				-0.8
3,986,352	-				+0.7
3,986,356	+				-0.4
3,986,356	+				+0.5
3,986,356	+				-2.1
3,986,356	+				-0.6
3,986,357	+				+0.3
3,986,358	-				+1.2
3,986,358	-				+0.7
3,986,364	-				-0.4
3,986,387	+				-1.8
3,986,419	+		GFF3947	0.20	-0.7
3,986,427	-		GFF3947	0.25	-0.1
3,986,434	+		GFF3947	0.29	-1.5
3,986,435	-		GFF3947	0.30	+0.0
3,986,452	-		GFF3947	0.40	-1.4
3,986,454	+		GFF3947	0.41	+0.1
3,986,454	+		GFF3947	0.41	+0.9
3,986,462	-		GFF3947	0.46	-0.8
3,986,472	-		GFF3947	0.51	-0.4
3,986,472	-		GFF3947	0.51	+0.9
3,986,515	+		GFF3947	0.77	+0.4
3,986,520	+		GFF3947	0.80	-0.7
3,986,520	+		GFF3947	0.80	-0.8
3,986,523	-		GFF3947	0.81	+0.6
3,986,568	+				+0.1
3,986,576	-				+1.1
3,986,601	+				+1.4
3,986,609	-				+0.2
3,986,611	+				-1.0
3,986,611	+				+0.2
3,986,611	+				-0.5
3,986,611	+				-1.2
3,986,611	+				-0.1
3,986,611	+				-0.4
3,986,611	+				-1.5
3,986,611	+				-0.8
3,986,611	+				+0.2
3,986,611	+				-0.2
3,986,611	+				-1.6
3,986,611	+				-2.1
3,986,611	+				-0.0
3,986,611	+				+0.9
3,986,611	+				-1.5
3,986,611	+				-0.1
3,986,611	+				+1.5
3,986,611	+				-0.4
3,986,611	+				+1.6
3,986,611	+				+1.6
3,986,611	+				+1.6
3,986,611	+				+0.1
3,986,611	+				-0.5
3,986,611	+				-0.7
3,986,611	+				+0.1
3,986,611	+				-1.0
3,986,611	+				+0.8
3,986,611	+				-2.5
3,986,611	+				-0.7
3,986,611	+				+0.1
3,986,611	+				-1.0
3,986,611	+				-1.5
3,986,611	+				+0.3
3,986,611	+				+0.6
3,986,611	+				-1.9
3,986,611	+				-0.1
3,986,611	+				+0.1
3,986,611	+				-0.3
3,986,611	+				-0.1
3,986,611	+				-1.3
3,986,611	+				+0.2
3,986,611	+				-0.4
3,986,611	+				-2.8
3,986,611	+				+0.3
3,986,611	+				+0.6
3,986,611	+				+0.1
3,986,611	+				-1.7
3,986,618	+				+1.0
3,986,619	-				-1.3
3,986,619	-				-0.1
3,986,619	-				-1.6
3,986,619	-				-2.1
3,986,619	-				-0.1
3,986,619	-				+0.6
3,986,619	-				+0.0
3,986,619	-				-0.7
3,986,619	-				+0.9
3,986,619	-				-0.2
3,986,619	-				+0.8
3,986,619	-				+1.5
3,986,619	-				-0.5
3,986,619	-				+0.3
3,986,619	-				-0.0
3,986,619	-				-0.4
3,986,619	-				-0.6
3,986,619	-				-0.1
3,986,619	-				-0.4
3,986,619	-				+1.6
3,986,619	-				+0.2
3,986,619	-				-0.2
3,986,619	-				-1.6
3,986,619	-				+0.1
3,986,619	-				-0.0
3,986,619	-				-0.6
3,986,619	-				+0.0
3,986,619	-				-1.1
3,986,619	-				-0.3
3,986,619	-				+0.7
3,986,619	-				-1.9
3,986,619	-				-0.8
3,986,619	-				+0.5
3,986,619	-				-1.9
3,986,619	-				+0.3
3,986,619	-				+1.2
3,986,619	-				-0.5
3,986,619	-				+0.2
3,986,620	-				-0.7
3,986,626	-				+1.4
3,986,626	-				-0.0
3,986,634	+				-0.2
3,986,636	-				+0.8
3,986,639	+				-0.1
3,986,639	+				-0.3
3,986,642	-				-2.3
3,986,652	-				+0.5
3,986,652	-				-0.8
3,986,661	+				-0.9
3,986,661	+				+0.9
3,986,669	-				-0.1
3,986,672	+				-1.3
3,986,689	+				-1.1
3,986,701	-				+0.6
3,986,701	-				+1.4
3,986,701	-				+0.2
3,986,707	+				+2.1
3,986,708	+				-1.1
3,986,708	+				+0.2
3,986,708	+				+0.6
3,986,716	-				+0.9
3,986,716	-				-2.1
3,986,718	-				-0.7
3,986,723	-				-0.1
3,986,736	+				-0.3
3,986,744	-				-1.7
3,986,770	+				-2.0
3,986,784	+				-0.3
3,986,792	+				+0.3
3,986,792	-				-1.7
3,986,792	-				-0.1
3,986,798	+				-1.2
3,986,800	-				-0.1
3,986,801	-				-1.9
3,986,816	+				-0.7
3,986,834	-				+0.4
3,986,873	+				+0.1
3,986,873	+				-0.7
3,986,880	+				+0.0
3,986,880	+				-2.5
3,986,880	+				-0.4
3,986,888	-				-0.8
3,986,888	-				-0.4
3,986,888	-				+0.2
3,986,926	+				-1.3
3,986,926	+				-0.2
3,986,928	+				+0.3
3,986,934	-				+0.5
3,986,934	-				+0.6
3,986,936	+		GFF3948	0.10	-0.1
3,986,936	+		GFF3948	0.10	+1.5
3,986,954	+		GFF3948	0.12	+0.7
3,986,965	-		GFF3948	0.12	+1.1
3,986,999	+		GFF3948	0.15	-0.2
3,987,017	+		GFF3948	0.17	+0.9
3,987,021	-		GFF3948	0.17	+0.9
3,987,025	-		GFF3948	0.17	-1.8
3,987,025	-		GFF3948	0.17	-0.2
3,987,028	-		GFF3948	0.17	-1.5
3,987,041	+		GFF3948	0.19	-0.6
3,987,052	+		GFF3948	0.19	-0.7
3,987,052	+		GFF3948	0.19	-0.8
3,987,057	-		GFF3948	0.20	+0.3
3,987,060	-		GFF3948	0.20	-0.2
3,987,060	-		GFF3948	0.20	-0.9
3,987,066	+		GFF3948	0.20	-0.1
3,987,080	+		GFF3948	0.22	-1.9
3,987,083	+		GFF3948	0.22	+0.4
3,987,088	-		GFF3948	0.22	-1.9
3,987,091	-		GFF3948	0.22	-1.4
3,987,091	-		GFF3948	0.22	-0.7
3,987,093	+		GFF3948	0.23	-0.4
3,987,093	+		GFF3948	0.23	+0.7
3,987,093	+		GFF3948	0.23	-0.5
3,987,093	+		GFF3948	0.23	+0.2
3,987,093	+		GFF3948	0.23	-0.1
3,987,093	+		GFF3948	0.23	-0.4
3,987,093	+		GFF3948	0.23	+0.4
3,987,101	-		GFF3948	0.23	-0.6
3,987,101	-		GFF3948	0.23	-0.5
3,987,101	-		GFF3948	0.23	-1.3
3,987,101	-		GFF3948	0.23	-0.8
3,987,101	-		GFF3948	0.23	-1.3
3,987,101	-		GFF3948	0.23	+1.4
3,987,136	+		GFF3948	0.26	+0.3
3,987,136	+		GFF3948	0.26	+0.2
3,987,169	+		GFF3948	0.29	+0.3
3,987,171	+		GFF3948	0.29	+0.7
3,987,171	+		GFF3948	0.29	-0.3
3,987,176	+		GFF3948	0.29	-0.1
3,987,176	+		GFF3948	0.29	+1.2
3,987,184	-		GFF3948	0.30	+0.3
3,987,199	+		GFF3948	0.31	+0.7
3,987,206	+		GFF3948	0.32	-0.9
3,987,242	-		GFF3948	0.35	-0.5
3,987,278	+		GFF3948	0.37	+0.5
3,987,331	-		GFF3948	0.42	+0.9
3,987,333	+		GFF3948	0.42	+0.4
3,987,348	-		GFF3948	0.43	+1.8
3,987,350	-		GFF3948	0.43	-0.3
3,987,373	-		GFF3948	0.45	-0.7
3,987,406	+		GFF3948	0.48	-1.3
3,987,414	-		GFF3948	0.48	+1.2
3,987,414	-		GFF3948	0.48	-0.3
3,987,470	+		GFF3948	0.53	-0.0
3,987,471	-		GFF3948	0.53	-0.3
3,987,478	-		GFF3948	0.53	+0.1
3,987,478	-		GFF3948	0.53	-0.6
3,987,488	-		GFF3948	0.54	+0.3
3,987,494	-		GFF3948	0.55	-0.5
3,987,516	+		GFF3948	0.56	+0.0
3,987,523	-		GFF3948	0.57	-0.3
3,987,529	+		GFF3948	0.57	-0.4
3,987,537	-		GFF3948	0.58	-0.1
3,987,537	-		GFF3948	0.58	-0.4