Strain Fitness in Sphingobium sp. HT1-2 around GFF3919

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,955,435	-				-0.0
3,955,441	+				-0.7
3,955,441	+				-1.1
3,955,443	-				+0.5
3,955,449	-				-0.5
3,955,449	-				-0.0
3,955,454	+				+0.3
3,955,454	+				-0.5
3,955,457	-				-0.7
3,955,457	-				+0.3
3,955,459	+				+0.7
3,955,459	+				+0.2
3,955,459	+				-0.0
3,955,459	+				-1.4
3,955,459	+				-0.4
3,955,459	+				+0.1
3,955,459	+				-1.8
3,955,459	+				-1.6
3,955,459	+				+0.8
3,955,464	+				-0.5
3,955,467	-				+0.4
3,955,467	-				+0.5
3,955,467	-				+0.7
3,955,467	-				+0.0
3,955,467	-				-2.9
3,955,467	-				-0.5
3,955,467	-				-2.0
3,955,467	-				+0.1
3,955,467	-				+0.8
3,955,467	-				-0.8
3,955,467	-				-0.8
3,955,467	-				-0.3
3,955,467	-				-0.1
3,955,467	-				-1.1
3,955,467	-				-0.3
3,955,467	-				+0.9
3,955,469	+				+0.0
3,955,495	+				+0.0
3,955,509	+				+0.1
3,955,509	+				-0.9
3,955,517	-				+1.3
3,955,517	-				-1.0
3,955,517	-				+0.1
3,955,532	-				-0.7
3,955,532	-				-1.0
3,955,534	+				+0.5
3,955,534	+				-3.1
3,955,534	+				-0.4
3,955,534	+				-0.4
3,955,534	+				-1.3
3,955,534	+				+0.9
3,955,534	+				+1.7
3,955,534	+				+0.3
3,955,534	+				-0.4
3,955,534	+				-0.2
3,955,534	+				-0.7
3,955,534	+				+0.6
3,955,534	+				-0.5
3,955,540	-				+0.1
3,955,542	-				+0.6
3,955,542	-				-0.7
3,955,542	-				+0.3
3,955,542	-				-1.3
3,955,542	-				-0.4
3,955,542	-				-1.3
3,955,542	-				-0.5
3,955,542	-				-0.2
3,955,542	-				-0.5
3,955,549	+		GFF3917	0.14	+0.0
3,955,552	-		GFF3917	0.16	-0.7
3,955,558	+		GFF3917	0.20	-0.1
3,955,568	+		GFF3917	0.26	-0.6
3,955,568	+		GFF3917	0.26	-1.1
3,955,570	+		GFF3917	0.27	-0.5
3,955,574	-		GFF3917	0.30	+0.4
3,955,576	-		GFF3917	0.31	+0.7
3,955,576	-		GFF3917	0.31	-0.7
3,955,580	+		GFF3917	0.33	-1.5
3,955,603	-		GFF3917	0.48	-1.4
3,955,643	+		GFF3917	0.72	+1.1
3,955,643	+		GFF3917	0.72	+1.0
3,955,646	-		GFF3917	0.74	+0.4
3,955,651	-		GFF3917	0.77	-0.2
3,955,695	-				-1.1
3,955,706	+				-0.9
3,955,712	+				-1.6
3,955,714	-				+0.7
3,955,722	+				+0.2
3,955,724	+				-1.0
3,955,730	-				-1.6
3,955,730	-				-0.2
3,955,730	-				-0.7
3,955,760	+				+1.2
3,955,816	+				+1.4
3,955,836	+				-0.8
3,955,879	+		GFF3918	0.12	+0.6
3,955,879	-		GFF3918	0.12	-1.1
3,955,891	+		GFF3918	0.14	-2.8
3,955,896	+		GFF3918	0.15	-1.3
3,955,911	-		GFF3918	0.17	+0.0
3,955,969	+		GFF3918	0.26	-1.7
3,955,983	-		GFF3918	0.28	-0.9
3,955,984	-		GFF3918	0.29	-2.1
3,955,991	+		GFF3918	0.30	-0.3
3,955,991	+		GFF3918	0.30	+0.4
3,955,991	+		GFF3918	0.30	-2.2
3,955,991	-		GFF3918	0.30	+0.2
3,955,999	-		GFF3918	0.31	+0.6
3,956,016	+		GFF3918	0.34	-1.6
3,956,016	+		GFF3918	0.34	-0.5
3,956,016	+		GFF3918	0.34	+1.3
3,956,026	-		GFF3918	0.35	-0.7
3,956,031	+		GFF3918	0.36	+0.2
3,956,044	-		GFF3918	0.38	+0.8
3,956,049	+		GFF3918	0.39	-0.1
3,956,049	-		GFF3918	0.39	-0.5
3,956,057	-		GFF3918	0.40	-0.3
3,956,057	-		GFF3918	0.40	-2.1
3,956,057	-		GFF3918	0.40	-0.5
3,956,080	+		GFF3918	0.44	-0.3
3,956,080	+		GFF3918	0.44	-1.4
3,956,080	+		GFF3918	0.44	-0.4
3,956,080	+		GFF3918	0.44	-2.9
3,956,088	-		GFF3918	0.45	+1.7
3,956,088	-		GFF3918	0.45	-1.7
3,956,088	-		GFF3918	0.45	+0.7
3,956,088	-		GFF3918	0.45	+0.3
3,956,088	-		GFF3918	0.45	+0.2
3,956,106	+		GFF3918	0.48	-2.0
3,956,107	+		GFF3918	0.48	-0.3
3,956,112	+		GFF3918	0.49	+0.1
3,956,112	+		GFF3918	0.49	-0.7
3,956,112	+		GFF3918	0.49	-1.4
3,956,112	+		GFF3918	0.49	+0.9
3,956,112	+		GFF3918	0.49	-2.1
3,956,120	-		GFF3918	0.50	+0.3
3,956,120	-		GFF3918	0.50	-0.4
3,956,156	+		GFF3918	0.56	-1.3
3,956,156	+		GFF3918	0.56	-1.2
3,956,164	-		GFF3918	0.57	+0.3
3,956,164	-		GFF3918	0.57	+0.5
3,956,164	-		GFF3918	0.57	+0.3
3,956,164	-		GFF3918	0.57	-0.5
3,956,164	-		GFF3918	0.57	-1.9
3,956,230	+		GFF3918	0.67	-1.3
3,956,235	+		GFF3918	0.68	-1.0
3,956,237	-		GFF3918	0.68	-0.3
3,956,238	-		GFF3918	0.69	+1.7
3,956,240	+		GFF3918	0.69	+1.0
3,956,240	+		GFF3918	0.69	+0.3
3,956,240	+		GFF3918	0.69	+0.2
3,956,240	+		GFF3918	0.69	+0.5
3,956,240	+		GFF3918	0.69	+0.8
3,956,240	+		GFF3918	0.69	-0.3
3,956,248	-		GFF3918	0.70	-0.4
3,956,248	-		GFF3918	0.70	-1.1
3,956,248	-		GFF3918	0.70	+0.1
3,956,248	-		GFF3918	0.70	-0.7
3,956,250	+		GFF3918	0.70	-2.3
3,956,253	-		GFF3918	0.71	-0.5
3,956,274	+		GFF3918	0.74	-0.3
3,956,276	+		GFF3918	0.75	+0.3
3,956,284	+		GFF3918	0.76	+1.7
3,956,292	-		GFF3918	0.77	-0.1
3,956,292	-		GFF3918	0.77	-0.7
3,956,292	-		GFF3918	0.77	-0.3
3,956,295	+		GFF3918	0.78	+0.7
3,956,295	+		GFF3918	0.78	+0.8
3,956,295	+		GFF3918	0.78	+0.3
3,956,298	-		GFF3918	0.78	-0.3
3,956,300	+		GFF3918	0.78	-1.1
3,956,300	+		GFF3918	0.78	+0.2
3,956,300	+		GFF3918	0.78	+0.1
3,956,303	-		GFF3918	0.79	-1.2
3,956,303	-		GFF3918	0.79	-0.1
3,956,308	-		GFF3918	0.80	-0.3
3,956,308	-		GFF3918	0.80	-1.3
3,956,309	+		GFF3918	0.80	-0.0
3,956,309	+		GFF3918	0.80	-2.2
3,956,309	+		GFF3918	0.80	+0.4
3,956,309	+		GFF3918	0.80	+0.7
3,956,309	+		GFF3918	0.80	+0.9
3,956,309	+		GFF3918	0.80	-0.1
3,956,309	+		GFF3918	0.80	+0.7
3,956,317	-		GFF3918	0.81	+0.7
3,956,317	-		GFF3918	0.81	+0.5
3,956,317	-		GFF3918	0.81	+0.8
3,956,317	-		GFF3918	0.81	+0.9
3,956,322	+		GFF3918	0.82	-1.6
3,956,330	-		GFF3918	0.83	-0.7
3,956,330	-		GFF3918	0.83	-2.1
3,956,364	-		GFF3918	0.88	+0.5
3,956,367	+		GFF3918	0.89	+0.2
3,956,371	+		GFF3918	0.89	+0.0
3,956,389	+				-0.1
3,956,389	+				-1.5
3,956,397	-				-0.8
3,956,399	+				-0.4
3,956,404	+				-0.7
3,956,404	+				-0.1
3,956,404	+				+1.0
3,956,404	+				-0.0
3,956,412	-				-0.4
3,956,414	-				-1.9
3,956,424	-				+0.1
3,956,424	-				-0.5
3,956,431	+				+1.5
3,956,431	+				-1.5
3,956,431	+				+0.3
3,956,439	-				-2.1
3,956,439	-				-0.1
3,956,441	+				+0.9
3,956,447	+				+0.6
3,956,447	+				+0.2
3,956,448	-				-0.1
3,956,457	+				-1.3
3,956,473	-				-2.3
3,956,473	-				+0.1
3,956,473	-				-1.1
3,956,473	-				-1.2
3,956,473	-				-1.9
3,956,484	+				-1.2
3,956,533	-		GFF3919	0.10	-1.7
3,956,558	-		GFF3919	0.13	+1.1
3,956,584	+		GFF3919	0.16	-1.3
3,956,593	-		GFF3919	0.17	-0.6
3,956,628	-		GFF3919	0.20	-0.1
3,956,642	-		GFF3919	0.22	-0.8
3,956,652	+		GFF3919	0.23	-0.7
3,956,657	-		GFF3919	0.23	+0.4
3,956,668	+		GFF3919	0.25	+0.3
3,956,678	+		GFF3919	0.26	-0.1
3,956,693	+		GFF3919	0.27	+0.1
3,956,699	-		GFF3919	0.28	+0.1
3,956,701	+		GFF3919	0.28	+0.7
3,956,701	-		GFF3919	0.28	-0.1
3,956,709	-		GFF3919	0.29	-1.7
3,956,709	-		GFF3919	0.29	+0.5
3,956,732	+		GFF3919	0.31	+0.2
3,956,747	-		GFF3919	0.33	-0.8
3,956,761	+		GFF3919	0.34	+0.4
3,956,769	-		GFF3919	0.35	+1.1
3,956,769	-		GFF3919	0.35	-0.5
3,956,809	+		GFF3919	0.39	+0.5
3,956,820	+		GFF3919	0.41	-0.6
3,956,832	+		GFF3919	0.42	-1.7
3,956,832	+		GFF3919	0.42	+0.6
3,956,832	+		GFF3919	0.42	-0.4
3,956,840	-		GFF3919	0.43	+1.5
3,956,853	+		GFF3919	0.44	+0.2
3,956,891	+		GFF3919	0.48	-1.1
3,956,891	+		GFF3919	0.48	-1.4
3,956,891	+		GFF3919	0.48	+0.3
3,956,896	+		GFF3919	0.49	-0.3
3,956,896	+		GFF3919	0.49	-1.3
3,956,901	+		GFF3919	0.49	+0.7
3,956,909	-		GFF3919	0.50	+1.4
3,956,915	+		GFF3919	0.51	+1.1
3,956,958	+		GFF3919	0.55	-0.6
3,956,958	+		GFF3919	0.55	+0.1
3,956,958	+		GFF3919	0.55	-1.1
3,956,966	-		GFF3919	0.56	-0.3
3,956,966	-		GFF3919	0.56	+0.8
3,956,966	-		GFF3919	0.56	-0.2
3,956,975	-		GFF3919	0.57	+1.1
3,956,975	-		GFF3919	0.57	+0.2
3,957,011	+		GFF3919	0.61	-0.7
3,957,016	+		GFF3919	0.61	-0.2
3,957,019	-		GFF3919	0.62	+0.5
3,957,039	+		GFF3919	0.64	-0.4
3,957,041	-		GFF3919	0.64	-0.1
3,957,051	+		GFF3919	0.65	-1.4
3,957,057	-		GFF3919	0.66	-1.6
3,957,069	+		GFF3919	0.67	-0.5
3,957,069	+		GFF3919	0.67	-0.8
3,957,069	+		GFF3919	0.67	+0.2
3,957,077	+		GFF3919	0.68	-1.5
3,957,077	+		GFF3919	0.68	-0.5
3,957,077	+		GFF3919	0.68	-0.6
3,957,077	+		GFF3919	0.68	+0.2
3,957,082	+		GFF3919	0.68	+0.4
3,957,085	-		GFF3919	0.68	-0.7
3,957,085	-		GFF3919	0.68	+1.1
3,957,085	-		GFF3919	0.68	-0.7
3,957,095	-		GFF3919	0.70	-0.5
3,957,095	-		GFF3919	0.70	-0.7
3,957,095	-		GFF3919	0.70	-1.5
3,957,095	-		GFF3919	0.70	+0.4
3,957,104	+		GFF3919	0.70	+0.4
3,957,104	-		GFF3919	0.70	-1.5
3,957,104	-		GFF3919	0.70	-0.4
3,957,106	+		GFF3919	0.71	+0.4
3,957,114	+		GFF3919	0.72	-0.1
3,957,114	-		GFF3919	0.72	+0.1
3,957,116	+		GFF3919	0.72	+0.9
3,957,116	+		GFF3919	0.72	-1.3
3,957,116	+		GFF3919	0.72	-1.7
3,957,116	+		GFF3919	0.72	+1.1
3,957,116	+		GFF3919	0.72	+0.5
3,957,116	+		GFF3919	0.72	-2.3
3,957,116	+		GFF3919	0.72	-1.0
3,957,116	+		GFF3919	0.72	+0.3
3,957,124	-		GFF3919	0.73	-1.3
3,957,132	-		GFF3919	0.73	+0.2
3,957,139	+		GFF3919	0.74	-0.4
3,957,139	+		GFF3919	0.74	-0.8
3,957,139	+		GFF3919	0.74	+1.5
3,957,140	+		GFF3919	0.74	+0.4
3,957,140	+		GFF3919	0.74	+0.3
3,957,140	+		GFF3919	0.74	-0.1
3,957,147	-		GFF3919	0.75	+0.9
3,957,147	-		GFF3919	0.75	+0.5
3,957,147	-		GFF3919	0.75	-2.2
3,957,147	-		GFF3919	0.75	-0.5
3,957,147	-		GFF3919	0.75	-0.3
3,957,147	-		GFF3919	0.75	-0.8
3,957,164	-		GFF3919	0.77	+0.2
3,957,164	-		GFF3919	0.77	-0.3
3,957,164	-		GFF3919	0.77	+0.2
3,957,164	-		GFF3919	0.77	+1.4
3,957,164	-		GFF3919	0.77	-0.5
3,957,164	-		GFF3919	0.77	-1.7
3,957,170	+		GFF3919	0.77	-0.3
3,957,191	-		GFF3919	0.80	-0.1
3,957,204	-		GFF3919	0.81	+0.7
3,957,220	-		GFF3919	0.83	+0.1
3,957,225	-		GFF3919	0.83	-0.6
3,957,230	+		GFF3919	0.84	-1.7
3,957,288	+		GFF3919	0.90	+0.0
3,957,288	+		GFF3919	0.90	+0.2
3,957,288	+		GFF3919	0.90	-0.7
3,957,288	+		GFF3919	0.90	-1.3
3,957,295	+				-1.9
3,957,303	-				-1.0
3,957,316	-				-0.2
3,957,321	-				-0.5
3,957,324	+				+0.3
3,957,329	+				+0.9
3,957,331	-				-0.5
3,957,360	+				+0.5
3,957,375	-				-1.1
3,957,378	+				+0.0
3,957,380	-				-0.1
3,957,386	-				-0.2
3,957,386	-				-1.6
3,957,386	-				+0.3
3,957,386	-				-0.7
3,957,420	-				-1.3
3,957,430	+				+0.2
3,957,430	+				-0.7
3,957,430	+				-1.5
3,957,430	+				-0.8
3,957,430	+				+0.8
3,957,430	+				+0.1
3,957,430	+				+1.0
3,957,438	-				+0.4
3,957,438	-				+0.6
3,957,438	-				-0.9
3,957,438	-				-0.4
3,957,438	-				-0.7
3,957,438	-				-1.5
3,957,438	-				+0.5
3,957,473	+				-1.3
3,957,481	-				-0.8
3,957,486	+				-0.9
3,957,509	+				-1.8
3,957,510	+				-0.9
3,957,518	-				-1.3
3,957,532	+				+0.2
3,957,535	-				-0.6
3,957,570	-				-0.3
3,957,588	+				+0.9
3,957,592	-				-1.3
3,957,593	+				+0.7
3,957,598	+				+0.5
3,957,598	+				+0.2
3,957,601	-				-1.0
3,957,601	-				+1.1
3,957,601	-				+0.3
3,957,603	+				+0.4
3,957,606	-				+0.8
3,957,606	-				-0.5
3,957,611	-		GFF3920	0.10	-0.7
3,957,633	-		GFF3920	0.11	+0.3
3,957,634	-		GFF3920	0.11	-1.5
3,957,670	+		GFF3920	0.13	-0.9
3,957,685	+		GFF3920	0.13	+1.1
3,957,713	+		GFF3920	0.15	-0.1
3,957,719	-		GFF3920	0.15	-1.7
3,957,726	+		GFF3920	0.15	-1.3
3,957,752	-		GFF3920	0.16	-1.4
3,957,762	+		GFF3920	0.17	-0.2
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