Strain Fitness in Sphingobium sp. HT1-2 around GFF3872

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,911,431	-				-0.4
3,911,431	-				+0.0
3,911,489	+				-1.7
3,911,497	-				-0.5
3,911,503	+				-1.5
3,911,503	+				-0.4
3,911,521	-				-2.1
3,911,521	-				-0.7
3,911,522	-				-0.2
3,911,533	+				+0.0
3,911,533	+				-0.3
3,911,533	+				-2.1
3,911,539	-				+0.3
3,911,578	-				+1.0
3,911,588	-				-2.3
3,911,595	+		GFF3870	0.10	+0.3
3,911,595	+		GFF3870	0.10	+1.2
3,911,595	+		GFF3870	0.10	+2.1
3,911,600	+		GFF3870	0.11	-0.5
3,911,603	-		GFF3870	0.12	+0.0
3,911,603	-		GFF3870	0.12	-0.5
3,911,632	+		GFF3870	0.19	-0.8
3,911,640	-		GFF3870	0.20	-0.5
3,911,640	-		GFF3870	0.20	-1.9
3,911,650	-		GFF3870	0.23	-0.4
3,911,658	+		GFF3870	0.24	+0.9
3,911,718	+		GFF3870	0.38	-0.0
3,911,718	+		GFF3870	0.38	-0.4
3,911,718	+		GFF3870	0.38	+1.2
3,911,718	-		GFF3870	0.38	-0.3
3,911,726	-		GFF3870	0.40	-0.6
3,911,726	-		GFF3870	0.40	-0.6
3,911,736	+		GFF3870	0.42	-1.6
3,911,736	+		GFF3870	0.42	-2.4
3,911,736	+		GFF3870	0.42	-0.2
3,911,736	+		GFF3870	0.42	-0.8
3,911,736	+		GFF3870	0.42	-0.8
3,911,736	+		GFF3870	0.42	-0.8
3,911,736	+		GFF3870	0.42	-2.1
3,911,736	+		GFF3870	0.42	-0.1
3,911,736	+		GFF3870	0.42	-0.1
3,911,736	+		GFF3870	0.42	-1.3
3,911,736	+		GFF3870	0.42	+0.0
3,911,736	+		GFF3870	0.42	+0.2
3,911,744	-		GFF3870	0.44	-1.1
3,911,744	-		GFF3870	0.44	-0.1
3,911,744	-		GFF3870	0.44	-0.4
3,911,744	-		GFF3870	0.44	-1.2
3,911,744	-		GFF3870	0.44	+0.5
3,911,744	-		GFF3870	0.44	-0.6
3,911,744	-		GFF3870	0.44	-1.0
3,911,744	-		GFF3870	0.44	+0.7
3,911,744	-		GFF3870	0.44	-0.2
3,911,744	-		GFF3870	0.44	+1.2
3,911,763	-		GFF3870	0.48	-0.0
3,911,772	+		GFF3870	0.50	+1.6
3,911,779	+		GFF3870	0.51	-0.4
3,911,780	+		GFF3870	0.52	+0.4
3,911,783	-		GFF3870	0.52	-0.8
3,911,788	-		GFF3870	0.53	-1.0
3,911,788	-		GFF3870	0.53	+0.4
3,911,788	-		GFF3870	0.53	+0.0
3,911,790	+		GFF3870	0.54	-0.6
3,911,804	+		GFF3870	0.57	-0.8
3,911,825	+		GFF3870	0.62	-0.4
3,911,825	+		GFF3870	0.62	-0.3
3,911,833	-		GFF3870	0.64	+0.6
3,911,833	-		GFF3870	0.64	+0.2
3,911,833	-		GFF3870	0.64	-0.4
3,911,833	-		GFF3870	0.64	-0.2
3,911,833	-		GFF3870	0.64	-1.0
3,911,838	-		GFF3870	0.65	-2.0
3,911,838	-		GFF3870	0.65	-1.1
3,911,848	+		GFF3870	0.67	+0.3
3,911,853	+		GFF3870	0.68	+0.1
3,911,856	-		GFF3870	0.69	-1.3
3,911,856	-		GFF3870	0.69	+0.0
3,911,857	-		GFF3870	0.69	-0.5
3,911,861	-		GFF3870	0.70	-0.8
3,911,861	-		GFF3870	0.70	-1.3
3,911,866	+		GFF3870	0.71	-0.7
3,911,866	+		GFF3870	0.71	+0.4
3,911,875	+		GFF3870	0.73	+1.1
3,911,883	-		GFF3870	0.75	-1.3
3,911,883	-		GFF3870	0.75	-1.2
3,911,883	-		GFF3870	0.75	+0.1
3,911,884	-		GFF3870	0.75	+0.4
3,911,948	-		GFF3870	0.89	+0.9
3,911,964	+				-0.2
3,911,974	+				+0.2
3,911,982	+				+0.9
3,911,997	+				+0.0
3,912,008	+				-0.4
3,912,012	+				+1.1
3,912,020	-				-2.6
3,912,023	-				+0.7
3,912,033	+				-1.0
3,912,033	+				-0.6
3,912,033	+				-0.4
3,912,041	-				-0.2
3,912,066	-		GFF3871	0.11	+0.0
3,912,072	-		GFF3871	0.13	-1.5
3,912,072	-		GFF3871	0.13	+0.0
3,912,078	+		GFF3871	0.14	-0.3
3,912,079	+		GFF3871	0.15	+1.3
3,912,081	+		GFF3871	0.15	-0.1
3,912,087	-		GFF3871	0.17	-0.3
3,912,120	+		GFF3871	0.26	-2.1
3,912,133	+		GFF3871	0.29	-0.1
3,912,140	+		GFF3871	0.31	+0.0
3,912,140	+		GFF3871	0.31	+0.4
3,912,140	+		GFF3871	0.31	-0.9
3,912,141	-		GFF3871	0.32	-0.4
3,912,148	-		GFF3871	0.34	-0.3
3,912,148	-		GFF3871	0.34	-1.3
3,912,148	-		GFF3871	0.34	-0.3
3,912,169	+		GFF3871	0.39	-1.2
3,912,175	+		GFF3871	0.41	-1.1
3,912,175	+		GFF3871	0.41	-0.4
3,912,183	-		GFF3871	0.43	+0.3
3,912,194	+		GFF3871	0.46	-1.1
3,912,201	+		GFF3871	0.48	-0.1
3,912,218	-		GFF3871	0.53	+0.7
3,912,273	+		GFF3871	0.68	-1.2
3,912,281	+		GFF3871	0.70	+1.4
3,912,285	+		GFF3871	0.71	-1.3
3,912,285	+		GFF3871	0.71	-0.3
3,912,304	+		GFF3871	0.77	+0.9
3,912,304	+		GFF3871	0.77	-1.3
3,912,304	+		GFF3871	0.77	-1.3
3,912,312	-		GFF3871	0.79	-0.9
3,912,312	-		GFF3871	0.79	-1.4
3,912,314	+		GFF3871	0.79	-0.9
3,912,314	+		GFF3871	0.79	-0.0
3,912,320	+		GFF3871	0.81	+0.1
3,912,322	-		GFF3871	0.82	-0.3
3,912,322	-		GFF3871	0.82	-1.7
3,912,328	-		GFF3871	0.83	-1.2
3,912,328	-		GFF3871	0.83	+0.1
3,912,328	-		GFF3871	0.83	-2.5
3,912,334	-		GFF3871	0.85	-0.2
3,912,334	-		GFF3871	0.85	-0.7
3,912,346	+		GFF3871	0.88	+0.5
3,912,349	-		GFF3871	0.89	-0.1
3,912,349	-		GFF3871	0.89	+0.1
3,912,354	-				-1.4
3,912,373	-				-0.7
3,912,382	+				-1.2
3,912,382	+				+0.9
3,912,384	+				+0.3
3,912,449	+				-0.2
3,912,454	+				-1.1
3,912,457	-				+0.6
3,912,457	-				+0.3
3,912,457	-				-2.0
3,912,457	-				-1.3
3,912,457	-				+0.1
3,912,457	-				-0.2
3,912,457	-				-1.5
3,912,473	-				+1.1
3,912,502	+		GFF3872	0.10	-1.8
3,912,502	+		GFF3872	0.10	+0.3
3,912,502	+		GFF3872	0.10	-2.1
3,912,502	+		GFF3872	0.10	-0.5
3,912,515	+		GFF3872	0.12	+0.5
3,912,515	+		GFF3872	0.12	-1.3
3,912,515	+		GFF3872	0.12	+0.2
3,912,515	+		GFF3872	0.12	-0.6
3,912,523	-		GFF3872	0.13	+0.5
3,912,533	-		GFF3872	0.14	-0.2
3,912,538	-		GFF3872	0.15	-0.5
3,912,572	+		GFF3872	0.19	+0.8
3,912,585	+		GFF3872	0.20	+0.3
3,912,598	-		GFF3872	0.22	+0.7
3,912,634	+		GFF3872	0.27	-0.8
3,912,647	+		GFF3872	0.28	+0.3
3,912,650	+		GFF3872	0.29	+0.3
3,912,650	+		GFF3872	0.29	+0.1
3,912,656	+		GFF3872	0.29	+0.6
3,912,721	+		GFF3872	0.37	-0.5
3,912,729	+		GFF3872	0.38	+1.4
3,912,758	+		GFF3872	0.42	-0.2
3,912,778	+		GFF3872	0.45	+0.3
3,912,789	+		GFF3872	0.46	+1.0
3,912,789	+		GFF3872	0.46	-0.1
3,912,789	+		GFF3872	0.46	+0.6
3,912,789	+		GFF3872	0.46	+0.2
3,912,789	+		GFF3872	0.46	+0.5
3,912,789	+		GFF3872	0.46	+0.3
3,912,789	+		GFF3872	0.46	+0.3
3,912,789	+		GFF3872	0.46	-0.2
3,912,795	-		GFF3872	0.47	-1.0
3,912,797	-		GFF3872	0.47	-0.8
3,912,797	-		GFF3872	0.47	-0.8
3,912,797	-		GFF3872	0.47	-0.8
3,912,797	-		GFF3872	0.47	+0.6
3,912,803	+		GFF3872	0.48	-0.5
3,912,806	-		GFF3872	0.48	-0.1
3,912,811	-		GFF3872	0.49	+0.1
3,912,848	-		GFF3872	0.53	+0.8
3,912,861	+		GFF3872	0.55	-0.5
3,912,868	-		GFF3872	0.56	+0.7
3,912,886	+		GFF3872	0.58	-1.6
3,912,886	+		GFF3872	0.58	-0.9
3,912,894	+		GFF3872	0.59	-0.0
3,912,894	+		GFF3872	0.59	-0.4
3,912,894	-		GFF3872	0.59	-2.6
3,912,894	-		GFF3872	0.59	-0.8
3,912,894	-		GFF3872	0.59	-0.5
3,912,894	-		GFF3872	0.59	+0.2
3,912,894	-		GFF3872	0.59	+0.2
3,912,894	-		GFF3872	0.59	-0.4
3,912,899	+		GFF3872	0.60	+1.4
3,912,902	-		GFF3872	0.60	-2.6
3,912,902	-		GFF3872	0.60	-1.5
3,912,907	-		GFF3872	0.61	-0.7
3,912,909	+		GFF3872	0.61	-1.7
3,912,909	+		GFF3872	0.61	-1.3
3,912,918	+		GFF3872	0.62	+0.3
3,912,918	+		GFF3872	0.62	-1.7
3,912,926	-		GFF3872	0.63	-2.5
3,912,946	-		GFF3872	0.66	+0.1
3,912,956	+		GFF3872	0.67	+0.9
3,912,959	-		GFF3872	0.67	-1.4
3,912,970	-		GFF3872	0.69	-0.2
3,912,988	+		GFF3872	0.71	-1.1
3,913,016	+		GFF3872	0.74	-0.0
3,913,042	-		GFF3872	0.78	-1.5
3,913,044	+		GFF3872	0.78	-1.6
3,913,056	+		GFF3872	0.79	-0.1
3,913,058	+		GFF3872	0.80	+0.5
3,913,059	-		GFF3872	0.80	+0.1
3,913,095	+		GFF3872	0.84	-0.0
3,913,095	+		GFF3872	0.84	+1.3
3,913,095	+		GFF3872	0.84	-1.3
3,913,095	+		GFF3872	0.84	-1.7
3,913,103	-		GFF3872	0.85	+1.9
3,913,103	-		GFF3872	0.85	+0.3
3,913,117	+		GFF3872	0.87	-0.4
3,913,117	+		GFF3872	0.87	-1.6
3,913,117	+		GFF3872	0.87	+0.0
3,913,117	+		GFF3872	0.87	+1.3
3,913,117	+		GFF3872	0.87	+0.1
3,913,117	+		GFF3872	0.87	-0.8
3,913,117	+		GFF3872	0.87	-0.2
3,913,117	+		GFF3872	0.87	-0.8
3,913,117	+		GFF3872	0.87	-1.7
3,913,117	+		GFF3872	0.87	+0.4
3,913,117	+		GFF3872	0.87	-0.1
3,913,117	+		GFF3872	0.87	+1.1
3,913,125	-		GFF3872	0.88	+0.4
3,913,125	-		GFF3872	0.88	+1.2
3,913,125	-		GFF3872	0.88	-0.1
3,913,125	-		GFF3872	0.88	+0.4
3,913,125	-		GFF3872	0.88	-0.6
3,913,125	-		GFF3872	0.88	-0.8
3,913,125	-		GFF3872	0.88	-0.8
3,913,125	-		GFF3872	0.88	-1.5
3,913,130	+		GFF3872	0.89	-1.5
3,913,148	-				-0.4
3,913,158	-				-0.6
3,913,159	+				-0.6
3,913,171	+				+0.1
3,913,197	+				+0.1
3,913,197	+				-2.1
3,913,197	+				+0.4
3,913,205	-				+0.6
3,913,205	-				-2.0
3,913,205	-				-1.1
3,913,210	+				-1.0
3,913,210	+				+0.3
3,913,210	+				-1.7
3,913,216	-				+0.4
3,913,228	+				-0.3
3,913,228	+				-0.2
3,913,259	+				-0.6
3,913,267	-				+0.1
3,913,298	-		GFF3873	0.16	-1.7
3,913,331	+		GFF3873	0.22	+0.4
3,913,337	+		GFF3873	0.24	+0.1
3,913,339	-		GFF3873	0.24	-1.6
3,913,339	-		GFF3873	0.24	-1.5
3,913,355	+		GFF3873	0.27	-0.4
3,913,381	+		GFF3873	0.33	-1.5
3,913,389	-		GFF3873	0.34	+0.2
3,913,389	-		GFF3873	0.34	-3.1
3,913,402	+		GFF3873	0.37	-0.5
3,913,403	-		GFF3873	0.37	-1.7
3,913,410	-		GFF3873	0.38	-1.3
3,913,410	-		GFF3873	0.38	-0.1
3,913,433	-		GFF3873	0.43	-0.2
3,913,435	+		GFF3873	0.43	-1.5
3,913,435	+		GFF3873	0.43	+0.5
3,913,435	+		GFF3873	0.43	+1.1
3,913,443	-		GFF3873	0.45	+1.5
3,913,457	+		GFF3873	0.48	-1.7
3,913,468	+		GFF3873	0.50	-0.3
3,913,476	-		GFF3873	0.52	+1.5
3,913,481	-		GFF3873	0.53	-1.0
3,913,481	-		GFF3873	0.53	-1.1
3,913,490	+		GFF3873	0.55	-0.8
3,913,494	+		GFF3873	0.55	+0.1
3,913,503	-		GFF3873	0.57	-2.2
3,913,505	+		GFF3873	0.58	-1.5
3,913,525	+		GFF3873	0.62	-1.2
3,913,560	+		GFF3873	0.69	-0.9
3,913,590	-		GFF3873	0.75	-0.4
3,913,629	+		GFF3873	0.83	-1.4
3,913,656	+		GFF3873	0.88	+1.5
3,913,667	+				-1.9
3,913,670	-				+0.1
3,913,675	-				-0.6
3,913,687	+				+0.2
3,913,694	+				-1.9
3,913,703	+				-2.1
3,913,711	-				+0.1
3,913,713	+				+1.8
3,913,716	+				+0.3
3,913,721	+				+0.4
3,913,722	+				-1.0
3,913,722	+				-1.5
3,913,730	-				-0.4
3,913,732	+				-1.2
3,913,732	+				-0.3
3,913,741	-				-2.0
3,913,770	+		GFF3874	0.13	-0.5
3,913,777	+		GFF3874	0.15	-2.2
3,913,777	+		GFF3874	0.15	-0.3
3,913,778	+		GFF3874	0.15	-0.0
3,913,782	+		GFF3874	0.16	+0.9
3,913,785	-		GFF3874	0.16	-0.4
3,913,785	-		GFF3874	0.16	-0.1
3,913,785	-		GFF3874	0.16	-0.9
3,913,785	-		GFF3874	0.16	-0.1
3,913,785	-		GFF3874	0.16	+1.1
3,913,785	-		GFF3874	0.16	-0.6
3,913,786	-		GFF3874	0.16	-0.5
3,913,789	+		GFF3874	0.17	+0.7
3,913,789	+		GFF3874	0.17	+1.5
3,913,789	+		GFF3874	0.17	+0.1
3,913,790	-		GFF3874	0.17	+0.5
3,913,804	+		GFF3874	0.20	-1.3
3,913,804	+		GFF3874	0.20	+0.7
3,913,807	-		GFF3874	0.21	-1.6
3,913,809	+		GFF3874	0.21	+0.7
3,913,809	+		GFF3874	0.21	+1.0
3,913,809	+		GFF3874	0.21	-0.1
3,913,809	+		GFF3874	0.21	-1.3
3,913,809	+		GFF3874	0.21	-0.3
3,913,809	+		GFF3874	0.21	+0.7
3,913,812	-		GFF3874	0.22	-1.0
3,913,812	-		GFF3874	0.22	-1.0
3,913,812	-		GFF3874	0.22	-1.0
3,913,816	+		GFF3874	0.23	+0.3
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