Strain Fitness in Sphingobium sp. HT1-2 around GFF3856

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,895,384	+		GFF3855	0.37	+0.3
3,895,403	+		GFF3855	0.38	-0.7
3,895,413	-		GFF3855	0.39	-1.0
3,895,441	+		GFF3855	0.41	-2.1
3,895,441	+		GFF3855	0.41	+0.1
3,895,441	+		GFF3855	0.41	+0.1
3,895,444	-		GFF3855	0.41	-0.3
3,895,449	-		GFF3855	0.41	-1.9
3,895,449	-		GFF3855	0.41	+0.2
3,895,449	-		GFF3855	0.41	+1.4
3,895,449	-		GFF3855	0.41	-1.9
3,895,449	-		GFF3855	0.41	+0.5
3,895,449	-		GFF3855	0.41	-1.9
3,895,449	-		GFF3855	0.41	-1.5
3,895,449	-		GFF3855	0.41	+0.5
3,895,449	-		GFF3855	0.41	+0.2
3,895,449	-		GFF3855	0.41	+0.3
3,895,451	-		GFF3855	0.41	+0.1
3,895,479	+		GFF3855	0.43	+0.7
3,895,489	-		GFF3855	0.44	+0.9
3,895,533	-		GFF3855	0.47	+0.3
3,895,565	-		GFF3855	0.49	+0.4
3,895,590	+		GFF3855	0.51	-1.6
3,895,590	+		GFF3855	0.51	+1.4
3,895,598	-		GFF3855	0.52	+0.6
3,895,600	+		GFF3855	0.52	+0.2
3,895,608	-		GFF3855	0.53	+0.3
3,895,608	-		GFF3855	0.53	-0.9
3,895,618	+		GFF3855	0.53	-0.4
3,895,648	-		GFF3855	0.55	+0.1
3,895,673	+		GFF3855	0.57	-0.0
3,895,698	-		GFF3855	0.59	-0.1
3,895,741	-		GFF3855	0.62	-0.8
3,895,762	+		GFF3855	0.63	-1.1
3,895,780	+		GFF3855	0.65	+0.2
3,895,789	+		GFF3855	0.65	-0.8
3,895,789	+		GFF3855	0.65	+0.8
3,895,797	-		GFF3855	0.66	-0.5
3,895,814	+		GFF3855	0.67	-0.3
3,895,822	+		GFF3855	0.68	+0.3
3,895,830	-		GFF3855	0.68	-0.5
3,895,841	+		GFF3855	0.69	+0.6
3,895,844	+		GFF3855	0.69	+0.2
3,895,871	+		GFF3855	0.71	-2.4
3,895,883	+		GFF3855	0.72	+1.1
3,895,884	-		GFF3855	0.72	-2.3
3,895,901	-		GFF3855	0.73	-1.4
3,895,901	-		GFF3855	0.73	+0.8
3,895,946	-		GFF3855	0.76	-0.0
3,895,960	+		GFF3855	0.77	-0.5
3,895,986	+		GFF3855	0.79	-1.5
3,896,023	+		GFF3855	0.82	+0.5
3,896,029	+		GFF3855	0.82	-0.8
3,896,029	+		GFF3855	0.82	-0.3
3,896,029	+		GFF3855	0.82	-2.1
3,896,031	-		GFF3855	0.82	+0.7
3,896,031	-		GFF3855	0.82	-1.0
3,896,031	-		GFF3855	0.82	+0.3
3,896,037	-		GFF3855	0.83	-0.2
3,896,037	-		GFF3855	0.83	-1.5
3,896,037	-		GFF3855	0.83	+0.3
3,896,043	+		GFF3855	0.83	-1.6
3,896,053	+		GFF3855	0.84	-1.0
3,896,053	+		GFF3855	0.84	-1.7
3,896,068	+		GFF3855	0.85	-0.5
3,896,074	-		GFF3855	0.85	-1.4
3,896,099	+		GFF3855	0.87	+0.0
3,896,123	+		GFF3855	0.89	-0.6
3,896,131	-		GFF3855	0.90	-0.1
3,896,131	-		GFF3855	0.90	+0.3
3,896,131	-		GFF3855	0.90	+0.9
3,896,140	+				+1.1
3,896,141	+				+0.4
3,896,145	+				-1.8
3,896,145	+				-1.6
3,896,150	+				+0.3
3,896,150	+				-2.2
3,896,150	+				-0.6
3,896,150	+				+1.1
3,896,150	+				-0.1
3,896,150	+				-1.5
3,896,150	+				-2.0
3,896,150	+				-0.2
3,896,152	+				-0.0
3,896,153	-				-1.7
3,896,153	-				-0.3
3,896,158	-				-0.9
3,896,165	+				-2.3
3,896,175	-				-0.5
3,896,185	+				-0.3
3,896,193	-				+0.3
3,896,200	+				-0.8
3,896,200	+				-0.2
3,896,200	+				+0.8
3,896,200	+				-0.6
3,896,200	+				-1.3
3,896,208	-				-1.5
3,896,208	-				-0.1
3,896,208	-				-1.1
3,896,208	-				-1.6
3,896,208	-				+0.0
3,896,217	-				-0.3
3,896,225	+				-2.9
3,896,225	+				-0.9
3,896,225	+				-1.2
3,896,228	+				-1.1
3,896,230	+				-1.2
3,896,232	-				+0.2
3,896,266	-				-1.5
3,896,271	-				-0.0
3,896,273	+				-0.3
3,896,274	-				+0.3
3,896,281	-				-0.5
3,896,286	+				+0.6
3,896,311	-				+0.7
3,896,327	+				+1.6
3,896,328	-				-0.0
3,896,332	+				-0.3
3,896,333	+				-0.4
3,896,335	-				-0.9
3,896,335	-				-0.8
3,896,335	-				-1.7
3,896,340	+				+0.7
3,896,355	+				+0.3
3,896,355	+				+0.1
3,896,355	+				-1.0
3,896,355	+				-0.6
3,896,355	+				-0.3
3,896,355	+				+1.5
3,896,355	+				+0.4
3,896,355	+				-0.9
3,896,363	-				-1.1
3,896,363	-				+0.8
3,896,363	-				+1.0
3,896,366	+				+0.6
3,896,366	+				-0.1
3,896,374	-				-0.7
3,896,374	-				-2.1
3,896,387	+				-2.2
3,896,392	+				-0.3
3,896,392	+				-1.2
3,896,392	+				+0.2
3,896,392	+				+0.5
3,896,398	-				+0.6
3,896,400	-				+0.6
3,896,400	-				+0.9
3,896,400	-				-0.8
3,896,400	-				-0.7
3,896,400	-				-0.5
3,896,405	-				+0.5
3,896,411	+				+0.4
3,896,411	+				-2.5
3,896,411	+				-1.4
3,896,419	+				+0.3
3,896,427	-				-0.2
3,896,441	-				+0.3
3,896,476	+				-0.4
3,896,476	+				-1.7
3,896,498	-				-0.6
3,896,506	-				+1.5
3,896,506	-				-0.2
3,896,506	-				-0.3
3,896,519	+				-0.5
3,896,534	+				-1.1
3,896,541	+				-2.9
3,896,601	-		GFF3856	0.11	-0.6
3,896,605	-		GFF3856	0.11	+0.9
3,896,632	+		GFF3856	0.13	-0.2
3,896,660	+		GFF3856	0.14	-0.9
3,896,678	+		GFF3856	0.15	+0.1
3,896,678	+		GFF3856	0.15	-0.2
3,896,678	+		GFF3856	0.15	+1.7
3,896,678	+		GFF3856	0.15	-0.2
3,896,683	+		GFF3856	0.15	-1.6
3,896,691	-		GFF3856	0.16	-0.9
3,896,691	-		GFF3856	0.16	-0.1
3,896,717	+		GFF3856	0.17	-0.1
3,896,717	+		GFF3856	0.17	-2.0
3,896,717	+		GFF3856	0.17	-1.5
3,896,717	+		GFF3856	0.17	+0.2
3,896,717	+		GFF3856	0.17	-1.1
3,896,717	+		GFF3856	0.17	-0.8
3,896,717	+		GFF3856	0.17	-2.4
3,896,717	+		GFF3856	0.17	+0.3
3,896,717	+		GFF3856	0.17	+0.6
3,896,717	+		GFF3856	0.17	-1.7
3,896,717	+		GFF3856	0.17	+0.9
3,896,717	+		GFF3856	0.17	+1.1
3,896,717	+		GFF3856	0.17	-0.2
3,896,717	+		GFF3856	0.17	-0.2
3,896,717	+		GFF3856	0.17	-1.1
3,896,717	+		GFF3856	0.17	-3.0
3,896,717	+		GFF3856	0.17	-0.8
3,896,717	+		GFF3856	0.17	-1.6
3,896,717	+		GFF3856	0.17	-2.0
3,896,717	+		GFF3856	0.17	-0.1
3,896,724	+		GFF3856	0.17	+0.5
3,896,724	+		GFF3856	0.17	-0.2
3,896,724	+		GFF3856	0.17	-1.0
3,896,725	+		GFF3856	0.17	-1.2
3,896,725	+		GFF3856	0.17	+0.1
3,896,725	+		GFF3856	0.17	-2.1
3,896,725	-		GFF3856	0.17	+0.7
3,896,725	-		GFF3856	0.17	-0.3
3,896,725	-		GFF3856	0.17	+0.4
3,896,725	-		GFF3856	0.17	-0.5
3,896,725	-		GFF3856	0.17	+0.3
3,896,725	-		GFF3856	0.17	+0.5
3,896,725	-		GFF3856	0.17	+0.4
3,896,725	-		GFF3856	0.17	+0.5
3,896,725	-		GFF3856	0.17	+0.7
3,896,725	-		GFF3856	0.17	-0.2
3,896,725	-		GFF3856	0.17	+0.0
3,896,725	-		GFF3856	0.17	+0.1
3,896,725	-		GFF3856	0.17	+0.7
3,896,725	-		GFF3856	0.17	+0.0
3,896,725	-		GFF3856	0.17	-0.9
3,896,725	-		GFF3856	0.17	+0.0
3,896,748	+		GFF3856	0.18	+0.1
3,896,824	+		GFF3856	0.22	-0.6
3,896,824	+		GFF3856	0.22	+0.3
3,896,832	-		GFF3856	0.23	+0.2
3,896,845	+		GFF3856	0.23	-3.1
3,896,891	+		GFF3856	0.25	-0.6
3,896,904	+		GFF3856	0.26	-0.1
3,896,912	-		GFF3856	0.26	+1.5
3,896,944	+		GFF3856	0.28	-0.2
3,896,944	+		GFF3856	0.28	+0.6
3,896,944	+		GFF3856	0.28	-1.8
3,896,948	+		GFF3856	0.28	+0.1
3,896,952	-		GFF3856	0.28	-0.4
3,896,956	+		GFF3856	0.29	-0.1
3,896,957	-		GFF3856	0.29	-0.7
3,896,997	-		GFF3856	0.31	-0.9
3,897,026	+		GFF3856	0.32	+0.4
3,897,041	+		GFF3856	0.33	-0.6
3,897,041	+		GFF3856	0.33	-1.5
3,897,044	-		GFF3856	0.33	+0.4
3,897,049	-		GFF3856	0.33	-2.0
3,897,049	-		GFF3856	0.33	+0.8
3,897,049	-		GFF3856	0.33	-0.6
3,897,049	-		GFF3856	0.33	-2.8
3,897,052	+		GFF3856	0.33	+0.1
3,897,052	+		GFF3856	0.33	-0.5
3,897,059	-		GFF3856	0.34	-0.5
3,897,060	-		GFF3856	0.34	-1.6
3,897,070	-		GFF3856	0.34	+0.3
3,897,093	+		GFF3856	0.35	-0.6
3,897,108	+		GFF3856	0.36	-2.3
3,897,144	-		GFF3856	0.38	-2.0
3,897,164	-		GFF3856	0.39	-1.9
3,897,168	+		GFF3856	0.39	-3.0
3,897,171	-		GFF3856	0.39	-2.7
3,897,206	-		GFF3856	0.41	-3.0
3,897,306	+		GFF3856	0.46	+0.4
3,897,314	-		GFF3856	0.46	-2.7
3,897,315	-		GFF3856	0.46	-0.2
3,897,347	-		GFF3856	0.48	-1.8
3,897,354	-		GFF3856	0.48	+0.3
3,897,357	+		GFF3856	0.48	-0.4
3,897,360	-		GFF3856	0.48	-1.0
3,897,362	+		GFF3856	0.49	+0.4
3,897,365	-		GFF3856	0.49	+1.9
3,897,372	+		GFF3856	0.49	+0.8
3,897,379	+		GFF3856	0.49	+1.9
3,897,380	-		GFF3856	0.49	+0.6
3,897,380	-		GFF3856	0.49	+0.1
3,897,416	+		GFF3856	0.51	-0.3
3,897,430	+		GFF3856	0.52	+0.2
3,897,430	+		GFF3856	0.52	-0.4
3,897,430	+		GFF3856	0.52	+0.1
3,897,430	+		GFF3856	0.52	+0.6
3,897,430	+		GFF3856	0.52	-0.5
3,897,430	+		GFF3856	0.52	-0.4
3,897,430	+		GFF3856	0.52	+0.3
3,897,430	+		GFF3856	0.52	-1.9
3,897,430	+		GFF3856	0.52	+0.6
3,897,430	+		GFF3856	0.52	+0.1
3,897,430	+		GFF3856	0.52	+0.5
3,897,430	+		GFF3856	0.52	-2.6
3,897,438	-		GFF3856	0.52	+0.5
3,897,438	-		GFF3856	0.52	+0.5
3,897,438	-		GFF3856	0.52	-2.1
3,897,438	-		GFF3856	0.52	-0.5
3,897,438	-		GFF3856	0.52	-1.2
3,897,438	-		GFF3856	0.52	+1.1
3,897,438	-		GFF3856	0.52	-0.7
3,897,438	-		GFF3856	0.52	-1.1
3,897,446	+		GFF3856	0.53	+0.7
3,897,450	+		GFF3856	0.53	-2.7
3,897,454	-		GFF3856	0.53	+0.4
3,897,454	-		GFF3856	0.53	-0.8
3,897,458	-		GFF3856	0.53	-1.4
3,897,477	+		GFF3856	0.54	-1.7
3,897,477	+		GFF3856	0.54	+0.2
3,897,477	+		GFF3856	0.54	-0.7
3,897,477	+		GFF3856	0.54	-1.6
3,897,498	+		GFF3856	0.55	-0.9
3,897,498	+		GFF3856	0.55	-1.0
3,897,498	+		GFF3856	0.55	+0.6
3,897,498	+		GFF3856	0.55	-0.7
3,897,498	+		GFF3856	0.55	-1.4
3,897,506	-		GFF3856	0.56	-0.2
3,897,506	-		GFF3856	0.56	+1.1
3,897,506	-		GFF3856	0.56	-0.9
3,897,550	-		GFF3856	0.58	+0.0
3,897,569	+		GFF3856	0.59	-0.7
3,897,578	-		GFF3856	0.59	-1.6
3,897,592	+		GFF3856	0.60	-0.1
3,897,600	-		GFF3856	0.60	-1.0
3,897,637	-		GFF3856	0.62	+0.2
3,897,641	-		GFF3856	0.62	-0.8
3,897,641	-		GFF3856	0.62	-0.4
3,897,641	-		GFF3856	0.62	+0.3
3,897,641	-		GFF3856	0.62	-0.5
3,897,646	-		GFF3856	0.62	+0.6
3,897,651	+		GFF3856	0.63	-0.8
3,897,651	+		GFF3856	0.63	+0.8
3,897,651	+		GFF3856	0.63	+0.2
3,897,659	-		GFF3856	0.63	+0.1
3,897,659	-		GFF3856	0.63	+1.9
3,897,659	-		GFF3856	0.63	+0.8
3,897,659	-		GFF3856	0.63	+0.2
3,897,665	-		GFF3856	0.63	+0.5
3,897,676	-		GFF3856	0.64	-0.1
3,897,686	+		GFF3856	0.64	+0.2
3,897,694	+		GFF3856	0.65	+1.2
3,897,694	+		GFF3856	0.65	-0.3
3,897,694	+		GFF3856	0.65	+1.1
3,897,700	-		GFF3856	0.65	+0.5
3,897,701	-		GFF3856	0.65	-0.1
3,897,701	-		GFF3856	0.65	-2.1
3,897,705	+		GFF3856	0.65	+0.4
3,897,705	+		GFF3856	0.65	+0.3
3,897,708	-		GFF3856	0.66	+0.0
3,897,713	-		GFF3856	0.66	+1.2
3,897,713	-		GFF3856	0.66	+0.3
3,897,713	-		GFF3856	0.66	+0.4
3,897,713	-		GFF3856	0.66	-0.7
3,897,713	-		GFF3856	0.66	-0.5
3,897,713	-		GFF3856	0.66	-2.0
3,897,713	-		GFF3856	0.66	+0.5
3,897,723	-		GFF3856	0.66	-0.6
3,897,747	+		GFF3856	0.67	-0.9
3,897,767	+		GFF3856	0.68	-1.2
3,897,767	+		GFF3856	0.68	-0.5
3,897,767	+		GFF3856	0.68	-1.4
3,897,775	-		GFF3856	0.69	+0.7
3,897,775	-		GFF3856	0.69	-1.4
3,897,785	+		GFF3856	0.69	-0.9
3,897,798	+		GFF3856	0.70	-0.5
3,897,802	+		GFF3856	0.70	-2.3
3,897,802	+		GFF3856	0.70	-1.3
3,897,810	-		GFF3856	0.71	-0.8
3,897,810	-		GFF3856	0.71	-2.7
3,897,837	+		GFF3856	0.72	+0.3
3,897,837	+		GFF3856	0.72	-0.7
3,897,837	+		GFF3856	0.72	+0.3
3,897,850	+		GFF3856	0.73	+0.7
3,897,850	+		GFF3856	0.73	-0.1
3,897,865	-		GFF3856	0.73	-1.1
3,897,906	-		GFF3856	0.75	-1.4
3,897,952	+		GFF3856	0.78	-1.3
3,897,970	-		GFF3856	0.78	+0.7
3,897,990	-		GFF3856	0.79	+0.2
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3,898,212	-				-1.0
3,898,212	-				-0.6
3,898,212	-				-1.8
3,898,212	-				+0.5
3,898,212	-				+0.6
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3,898,214	+				-1.1
3,898,214	+				+1.1
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3,898,219	+				-0.7
3,898,219	+				+0.2
3,898,219	+				-0.4
3,898,219	+				-0.4
3,898,219	+				-2.2
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3,898,219	+				+0.5
3,898,219	+				+0.2
3,898,219	+				-1.0
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3,898,219	+				+0.1
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3,898,227	-				-1.1
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3,898,227	-				+0.9
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3,898,227	-				-1.7
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3,898,227	-				-1.0
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3,898,262	+				+0.3
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3,898,293	-				-1.8
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3,898,321	+				+0.3
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3,898,338	+				-2.3
3,898,341	-				+0.3
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3,898,346	-				+0.5
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3,898,351	-				+0.7
3,898,351	-				-0.8
3,898,351	-				-0.6
3,898,414	-				+0.4
3,898,432	+				-0.1
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3,898,588	-				-0.8
3,898,597	+				-2.0
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3,898,599	+				+0.7
3,898,599	+				+0.5
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3,898,599	+				-0.7
3,898,605	-				-0.2
3,898,605	-				+0.8
3,898,607	-				-0.1
3,898,607	-				-2.3
3,898,607	-				-0.8
3,898,640	-				+0.4
3,898,662	+				-1.2
3,898,664	-				-0.6
3,898,665	+				-1.1
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3,898,670	-				-0.3
3,898,685	+				+0.2
3,898,685	+				-1.7
3,898,725	+				-0.1
3,898,744	+				-2.1
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3,898,802	+				+0.2
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3,898,808	+				-0.0
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3,898,878	+				+0.6
3,898,878	+				+0.3
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3,899,051	-				-2.4
3,899,051	-				-0.9
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3,899,271	+		GFF3857	0.18	-1.3
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3,899,327	-		GFF3857	0.20	+0.1
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3,899,376	+		GFF3857	0.22	-0.9