Strain Fitness in Sphingobium sp. HT1-2 around GFF3850

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,888,167	-		GFF3848	0.68	-0.1
3,888,167	-		GFF3848	0.68	-1.1
3,888,167	-		GFF3848	0.68	-0.5
3,888,173	+		GFF3848	0.69	-0.9
3,888,178	+		GFF3848	0.70	-1.4
3,888,178	+		GFF3848	0.70	+0.6
3,888,178	+		GFF3848	0.70	-0.2
3,888,178	+		GFF3848	0.70	-0.1
3,888,181	-		GFF3848	0.70	+0.4
3,888,181	-		GFF3848	0.70	+0.5
3,888,181	-		GFF3848	0.70	-0.2
3,888,225	+		GFF3848	0.77	-0.9
3,888,225	+		GFF3848	0.77	-0.8
3,888,227	-		GFF3848	0.77	+0.5
3,888,233	-		GFF3848	0.78	+0.7
3,888,248	+		GFF3848	0.81	-0.9
3,888,278	-		GFF3848	0.85	-0.1
3,888,280	+		GFF3848	0.86	+0.3
3,888,351	-				+0.3
3,888,354	+				-1.9
3,888,354	+				-0.9
3,888,354	+				-0.5
3,888,362	-				+0.7
3,888,362	-				+0.2
3,888,362	-				+0.5
3,888,362	-				+0.7
3,888,362	-				-1.6
3,888,362	-				-1.0
3,888,377	+				+0.8
3,888,377	-				-1.0
3,888,385	-				+0.1
3,888,418	-				-0.5
3,888,418	-				-3.0
3,888,431	-				-1.3
3,888,485	+				-1.0
3,888,499	+				-0.2
3,888,507	-				-0.3
3,888,558	+		GFF3849	0.10	+0.3
3,888,558	+		GFF3849	0.10	-0.1
3,888,558	+		GFF3849	0.10	-1.0
3,888,558	+		GFF3849	0.10	+0.4
3,888,558	+		GFF3849	0.10	+0.5
3,888,558	+		GFF3849	0.10	+0.8
3,888,566	-		GFF3849	0.11	+0.8
3,888,566	-		GFF3849	0.11	-0.7
3,888,566	-		GFF3849	0.11	-1.5
3,888,571	-		GFF3849	0.12	-0.8
3,888,582	+		GFF3849	0.14	-0.2
3,888,582	+		GFF3849	0.14	-0.2
3,888,590	-		GFF3849	0.15	-0.1
3,888,660	-		GFF3849	0.26	+0.3
3,888,660	-		GFF3849	0.26	-2.3
3,888,667	-		GFF3849	0.27	+0.0
3,888,679	-		GFF3849	0.29	-0.3
3,888,692	-		GFF3849	0.31	-0.5
3,888,697	-		GFF3849	0.31	-1.1
3,888,697	-		GFF3849	0.31	+0.3
3,888,702	+		GFF3849	0.32	-0.6
3,888,702	+		GFF3849	0.32	-0.7
3,888,709	-		GFF3849	0.33	-2.1
3,888,710	-		GFF3849	0.33	-0.6
3,888,710	-		GFF3849	0.33	-0.1
3,888,710	-		GFF3849	0.33	+0.0
3,888,712	+		GFF3849	0.34	+0.1
3,888,741	+		GFF3849	0.38	-0.1
3,888,748	-		GFF3849	0.39	-1.3
3,888,769	+		GFF3849	0.43	+0.1
3,888,769	+		GFF3849	0.43	-0.4
3,888,769	+		GFF3849	0.43	+0.7
3,888,769	+		GFF3849	0.43	-2.2
3,888,769	+		GFF3849	0.43	-0.1
3,888,777	-		GFF3849	0.44	+0.6
3,888,777	-		GFF3849	0.44	-1.3
3,888,777	-		GFF3849	0.44	+1.0
3,888,777	-		GFF3849	0.44	-0.7
3,888,788	+		GFF3849	0.45	-0.9
3,888,792	+		GFF3849	0.46	+0.2
3,888,800	-		GFF3849	0.47	+0.7
3,888,800	-		GFF3849	0.47	+1.0
3,888,826	-		GFF3849	0.51	+1.1
3,888,841	+		GFF3849	0.54	-2.6
3,888,847	+		GFF3849	0.54	+0.2
3,888,851	+		GFF3849	0.55	-0.4
3,888,854	+		GFF3849	0.56	-1.7
3,888,861	+		GFF3849	0.57	-1.7
3,888,862	-		GFF3849	0.57	+0.3
3,888,869	-		GFF3849	0.58	+0.4
3,888,869	-		GFF3849	0.58	-0.8
3,888,869	-		GFF3849	0.58	-0.5
3,888,875	+		GFF3849	0.59	-1.7
3,888,879	+		GFF3849	0.59	+1.1
3,888,907	-		GFF3849	0.64	+0.4
3,888,908	+		GFF3849	0.64	-0.0
3,888,908	+		GFF3849	0.64	+0.8
3,888,908	+		GFF3849	0.64	+0.5
3,888,908	+		GFF3849	0.64	-0.1
3,888,908	+		GFF3849	0.64	-0.5
3,888,916	-		GFF3849	0.65	-0.3
3,888,916	-		GFF3849	0.65	-3.0
3,888,916	-		GFF3849	0.65	-1.7
3,888,917	-		GFF3849	0.65	-0.9
3,888,921	-		GFF3849	0.66	+0.2
3,888,931	+		GFF3849	0.67	+1.3
3,888,941	+		GFF3849	0.69	-2.2
3,888,949	-		GFF3849	0.70	-1.5
3,888,958	-		GFF3849	0.71	-1.4
3,888,972	+		GFF3849	0.74	-0.4
3,888,972	+		GFF3849	0.74	+1.0
3,888,972	+		GFF3849	0.74	-0.9
3,888,972	+		GFF3849	0.74	-0.5
3,888,972	+		GFF3849	0.74	-0.7
3,888,972	+		GFF3849	0.74	-0.7
3,888,972	+		GFF3849	0.74	+0.4
3,888,975	-		GFF3849	0.74	+0.3
3,888,980	-		GFF3849	0.75	-0.5
3,888,980	-		GFF3849	0.75	+0.2
3,888,980	-		GFF3849	0.75	-0.3
3,888,980	-		GFF3849	0.75	+0.3
3,888,980	-		GFF3849	0.75	-0.6
3,888,980	-		GFF3849	0.75	-1.3
3,888,980	-		GFF3849	0.75	-1.3
3,888,980	-		GFF3849	0.75	-1.0
3,888,980	-		GFF3849	0.75	-0.4
3,888,980	-		GFF3849	0.75	-1.0
3,888,985	-		GFF3849	0.76	+0.4
3,888,997	-		GFF3849	0.77	+0.6
3,889,002	-		GFF3849	0.78	-0.6
3,889,013	+		GFF3849	0.80	+0.1
3,889,013	+		GFF3849	0.80	+1.0
3,889,013	+		GFF3849	0.80	-0.1
3,889,013	+		GFF3849	0.80	-0.3
3,889,013	+		GFF3849	0.80	-2.1
3,889,021	-		GFF3849	0.81	-0.0
3,889,021	-		GFF3849	0.81	+0.8
3,889,071	-		GFF3849	0.89	-0.5
3,889,072	+		GFF3849	0.89	-0.6
3,889,111	-				-0.7
3,889,111	-				-2.3
3,889,112	+				-0.2
3,889,128	+				-0.8
3,889,128	+				+0.2
3,889,132	-				-0.3
3,889,132	-				-1.7
3,889,133	+				-0.3
3,889,133	+				-0.7
3,889,136	-				-1.3
3,889,141	-				-1.3
3,889,146	-				-0.3
3,889,157	-				-0.3
3,889,173	+				+0.1
3,889,177	+				-0.4
3,889,202	+				+0.1
3,889,202	+				-0.4
3,889,208	-				-2.0
3,889,230	-				-0.3
3,889,230	-				-0.3
3,889,236	-				+0.2
3,889,236	-				-0.1
3,889,238	+				-0.3
3,889,243	+				-0.1
3,889,246	-				+1.6
3,889,246	-				-0.4
3,889,255	-				-0.1
3,889,273	+		GFF3850	0.10	-1.0
3,889,273	+		GFF3850	0.10	-1.9
3,889,273	+		GFF3850	0.10	-1.4
3,889,290	+		GFF3850	0.12	+1.1
3,889,291	-		GFF3850	0.12	+0.6
3,889,328	-		GFF3850	0.16	+0.1
3,889,329	+		GFF3850	0.16	-0.4
3,889,342	-		GFF3850	0.17	-0.1
3,889,358	-		GFF3850	0.18	-1.2
3,889,360	+		GFF3850	0.19	+0.3
3,889,360	+		GFF3850	0.19	+0.3
3,889,372	+		GFF3850	0.20	-0.2
3,889,382	+		GFF3850	0.21	+0.7
3,889,441	+		GFF3850	0.26	-0.8
3,889,453	+		GFF3850	0.27	-0.0
3,889,453	+		GFF3850	0.27	+1.1
3,889,453	+		GFF3850	0.27	-1.4
3,889,453	+		GFF3850	0.27	+0.3
3,889,461	-		GFF3850	0.28	-0.6
3,889,475	+		GFF3850	0.30	+0.1
3,889,481	+		GFF3850	0.30	-1.2
3,889,483	-		GFF3850	0.30	-1.7
3,889,483	-		GFF3850	0.30	-0.8
3,889,483	-		GFF3850	0.30	+0.1
3,889,504	-		GFF3850	0.32	+0.9
3,889,511	-		GFF3850	0.33	-0.9
3,889,521	-		GFF3850	0.34	+0.7
3,889,521	-		GFF3850	0.34	-0.4
3,889,550	+		GFF3850	0.37	-2.1
3,889,550	+		GFF3850	0.37	+0.7
3,889,612	-		GFF3850	0.43	-0.8
3,889,628	+		GFF3850	0.44	-2.2
3,889,628	+		GFF3850	0.44	+0.4
3,889,636	-		GFF3850	0.45	+0.3
3,889,636	-		GFF3850	0.45	+0.1
3,889,636	-		GFF3850	0.45	-2.3
3,889,636	-		GFF3850	0.45	+0.7
3,889,636	-		GFF3850	0.45	-0.3
3,889,638	+		GFF3850	0.45	+0.1
3,889,638	+		GFF3850	0.45	+0.7
3,889,638	+		GFF3850	0.45	-0.6
3,889,638	+		GFF3850	0.45	+0.3
3,889,643	+		GFF3850	0.46	-1.0
3,889,643	+		GFF3850	0.46	-0.2
3,889,643	+		GFF3850	0.46	+0.2
3,889,643	+		GFF3850	0.46	+0.4
3,889,643	+		GFF3850	0.46	-0.7
3,889,646	-		GFF3850	0.46	-1.5
3,889,648	+		GFF3850	0.46	-1.9
3,889,648	+		GFF3850	0.46	-0.5
3,889,650	+		GFF3850	0.46	+0.3
3,889,651	-		GFF3850	0.46	+0.1
3,889,651	-		GFF3850	0.46	-0.1
3,889,651	-		GFF3850	0.46	+0.7
3,889,651	-		GFF3850	0.46	-2.4
3,889,655	+		GFF3850	0.47	+0.1
3,889,656	-		GFF3850	0.47	-0.1
3,889,670	+		GFF3850	0.48	-0.0
3,889,670	+		GFF3850	0.48	+0.1
3,889,706	+		GFF3850	0.52	-3.2
3,889,717	+		GFF3850	0.53	-0.9
3,889,717	+		GFF3850	0.53	-0.5
3,889,717	+		GFF3850	0.53	-1.5
3,889,717	+		GFF3850	0.53	-0.1
3,889,725	-		GFF3850	0.54	-1.6
3,889,725	-		GFF3850	0.54	-0.3
3,889,742	+		GFF3850	0.55	-0.8
3,889,747	+		GFF3850	0.56	-0.8
3,889,750	-		GFF3850	0.56	-2.0
3,889,755	-		GFF3850	0.56	-0.2
3,889,764	-		GFF3850	0.57	+2.6
3,889,776	+		GFF3850	0.58	-0.7
3,889,776	+		GFF3850	0.58	+0.1
3,889,781	+		GFF3850	0.59	-1.9
3,889,784	-		GFF3850	0.59	-0.1
3,889,789	-		GFF3850	0.60	-0.3
3,889,789	-		GFF3850	0.60	-0.1
3,889,794	-		GFF3850	0.60	+0.6
3,889,794	-		GFF3850	0.60	-0.1
3,889,801	+		GFF3850	0.61	+0.1
3,889,801	+		GFF3850	0.61	-1.7
3,889,816	+		GFF3850	0.62	+1.1
3,889,818	+		GFF3850	0.62	+0.0
3,889,874	+		GFF3850	0.68	-0.1
3,889,882	-		GFF3850	0.69	-1.3
3,889,894	-		GFF3850	0.70	+0.5
3,889,894	-		GFF3850	0.70	+0.2
3,889,911	+		GFF3850	0.71	-0.4
3,889,911	+		GFF3850	0.71	-1.0
3,889,916	+		GFF3850	0.72	+0.2
3,889,919	-		GFF3850	0.72	-0.2
3,889,937	+		GFF3850	0.74	+0.7
3,889,943	+		GFF3850	0.74	+0.3
3,889,943	+		GFF3850	0.74	-0.5
3,889,943	+		GFF3850	0.74	+0.1
3,889,946	-		GFF3850	0.75	-0.5
3,889,951	-		GFF3850	0.75	+0.1
3,889,951	-		GFF3850	0.75	-1.6
3,889,965	+		GFF3850	0.77	-1.1
3,889,996	+		GFF3850	0.80	-0.0
3,890,004	-		GFF3850	0.80	+0.0
3,890,009	+		GFF3850	0.81	-0.6
3,890,009	+		GFF3850	0.81	+0.5
3,890,009	+		GFF3850	0.81	+0.9
3,890,009	+		GFF3850	0.81	+0.5
3,890,009	+		GFF3850	0.81	-0.9
3,890,009	+		GFF3850	0.81	+0.0
3,890,009	+		GFF3850	0.81	+1.0
3,890,014	+		GFF3850	0.81	-0.1
3,890,014	+		GFF3850	0.81	+0.2
3,890,017	-		GFF3850	0.82	+1.4
3,890,017	-		GFF3850	0.82	+0.8
3,890,017	-		GFF3850	0.82	-0.7
3,890,017	-		GFF3850	0.82	-0.1
3,890,017	-		GFF3850	0.82	+0.7
3,890,017	-		GFF3850	0.82	-1.0
3,890,017	-		GFF3850	0.82	-0.1
3,890,017	-		GFF3850	0.82	-0.3
3,890,017	-		GFF3850	0.82	+0.4
3,890,017	-		GFF3850	0.82	+0.1
3,890,017	-		GFF3850	0.82	+0.5
3,890,017	-		GFF3850	0.82	-0.4
3,890,022	-		GFF3850	0.82	+0.4
3,890,022	-		GFF3850	0.82	-0.5
3,890,022	-		GFF3850	0.82	-1.5
3,890,022	-		GFF3850	0.82	-0.3
3,890,055	+		GFF3850	0.85	-0.0
3,890,068	-		GFF3850	0.86	-0.6
3,890,104	+		GFF3850	0.90	-0.1
3,890,118	+				+0.8
3,890,118	+				+0.8
3,890,118	+				+0.4
3,890,123	+				+0.2
3,890,123	+				-0.1
3,890,123	+				-1.3
3,890,123	+				-0.5
3,890,123	+				-0.2
3,890,126	-				-0.8
3,890,126	-				-1.5
3,890,126	-				-0.1
3,890,131	-				-0.7
3,890,131	-				-0.8
3,890,131	-				+0.3
3,890,131	-				-0.3
3,890,142	+				-1.0
3,890,200	-				-0.6
3,890,200	-				+0.5
3,890,204	+				-0.0
3,890,204	+				+0.3
3,890,211	+				-0.4
3,890,222	+				+0.8
3,890,226	+				+0.3
3,890,226	+				-0.0
3,890,232	+				+0.5
3,890,240	-				+0.3
3,890,240	-				+1.0
3,890,264	-				-0.7
3,890,264	-				-0.1
3,890,265	-				-0.4
3,890,271	-				-1.1
3,890,281	+				-0.2
3,890,291	+				-1.7
3,890,291	+				+1.4
3,890,294	-				+0.5
3,890,298	+				+0.7
3,890,299	-				-0.7
3,890,310	+				-1.0
3,890,316	+				+0.3
3,890,324	-				-1.8
3,890,334	+				+0.8
3,890,334	+				-1.0
3,890,342	-				-1.3
3,890,350	-		GFF3851	0.10	-1.7
3,890,354	-		GFF3851	0.11	+0.5
3,890,358	-		GFF3851	0.11	-1.3
3,890,358	-		GFF3851	0.11	+0.5
3,890,370	-		GFF3851	0.12	-0.7
3,890,372	+		GFF3851	0.12	+0.4
3,890,424	+		GFF3851	0.16	-0.3
3,890,451	+		GFF3851	0.18	-1.3
3,890,459	-		GFF3851	0.19	-2.0
3,890,459	-		GFF3851	0.19	-0.1
3,890,459	-		GFF3851	0.19	+1.1
3,890,496	+		GFF3851	0.22	+0.3
3,890,503	-		GFF3851	0.22	-0.7
3,890,504	-		GFF3851	0.22	+1.1
3,890,504	-		GFF3851	0.22	-1.9
3,890,511	+		GFF3851	0.23	+0.1
3,890,511	-		GFF3851	0.23	+0.6
3,890,511	-		GFF3851	0.23	+0.7
3,890,511	-		GFF3851	0.23	-0.7
3,890,513	+		GFF3851	0.23	-0.8
3,890,514	-		GFF3851	0.23	-0.4
3,890,514	-		GFF3851	0.23	-1.6
3,890,517	+		GFF3851	0.23	+0.6
3,890,528	+		GFF3851	0.24	-0.5
3,890,528	+		GFF3851	0.24	+0.7
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