Strain Fitness in Sphingobium sp. HT1-2 around GFF3793

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,834,116	+				+0.2
3,834,155	-				-1.7
3,834,243	+				-0.4
3,834,459	+				-0.3
3,834,492	+				-1.2
3,834,495	-				-0.8
3,834,495	-				+1.9
3,834,495	-				-1.5
3,834,495	-				-0.0
3,834,498	+				+0.9
3,834,498	+				-2.0
3,834,505	-				-0.9
3,834,506	-				+0.3
3,834,506	-				-0.8
3,834,511	-				+0.8
3,834,531	+		GFF3792	0.13	-0.3
3,834,531	+		GFF3792	0.13	-2.3
3,834,532	-		GFF3792	0.13	+0.1
3,834,532	-		GFF3792	0.13	+0.9
3,834,536	+		GFF3792	0.13	+0.9
3,834,538	-		GFF3792	0.14	-0.4
3,834,539	-		GFF3792	0.14	+0.5
3,834,539	-		GFF3792	0.14	-1.0
3,834,539	-		GFF3792	0.14	+0.6
3,834,539	-		GFF3792	0.14	-0.6
3,834,539	-		GFF3792	0.14	-0.7
3,834,543	+		GFF3792	0.15	-1.1
3,834,551	-		GFF3792	0.16	-1.5
3,834,553	+		GFF3792	0.16	-0.7
3,834,554	-		GFF3792	0.16	+1.3
3,834,558	+		GFF3792	0.17	-1.0
3,834,558	+		GFF3792	0.17	+1.1
3,834,560	+		GFF3792	0.17	-0.3
3,834,560	+		GFF3792	0.17	+0.1
3,834,560	+		GFF3792	0.17	+0.3
3,834,579	+		GFF3792	0.20	+0.5
3,834,581	-		GFF3792	0.21	+0.7
3,834,584	+		GFF3792	0.21	-1.6
3,834,587	-		GFF3792	0.22	+0.7
3,834,597	-		GFF3792	0.23	-1.5
3,834,599	+		GFF3792	0.23	+0.9
3,834,604	+		GFF3792	0.24	+0.5
3,834,611	+		GFF3792	0.25	-2.4
3,834,611	+		GFF3792	0.25	-0.8
3,834,611	+		GFF3792	0.25	+0.6
3,834,617	+		GFF3792	0.26	+0.6
3,834,618	+		GFF3792	0.26	-1.4
3,834,618	+		GFF3792	0.26	-0.2
3,834,619	+		GFF3792	0.27	+0.7
3,834,619	-		GFF3792	0.27	-0.2
3,834,634	+		GFF3792	0.29	+0.3
3,834,641	-		GFF3792	0.30	+0.1
3,834,642	-		GFF3792	0.30	-1.4
3,834,642	-		GFF3792	0.30	-1.3
3,834,653	-		GFF3792	0.32	-0.6
3,834,653	-		GFF3792	0.32	-1.0
3,834,654	+		GFF3792	0.32	-0.8
3,834,657	-		GFF3792	0.33	-2.0
3,834,661	-		GFF3792	0.33	+0.7
3,834,666	+		GFF3792	0.34	-0.2
3,834,666	+		GFF3792	0.34	+0.1
3,834,666	+		GFF3792	0.34	+0.8
3,834,667	-		GFF3792	0.34	-2.6
3,834,668	-		GFF3792	0.34	-0.5
3,834,668	-		GFF3792	0.34	+0.3
3,834,671	+		GFF3792	0.35	+0.7
3,834,671	+		GFF3792	0.35	-0.1
3,834,671	+		GFF3792	0.35	-0.3
3,834,674	-		GFF3792	0.35	-0.3
3,834,679	-		GFF3792	0.36	-0.8
3,834,679	-		GFF3792	0.36	+0.5
3,834,679	-		GFF3792	0.36	+0.3
3,834,679	-		GFF3792	0.36	-0.0
3,834,679	-		GFF3792	0.36	-0.5
3,834,679	-		GFF3792	0.36	-1.8
3,834,700	+		GFF3792	0.40	-0.4
3,834,701	+		GFF3792	0.40	-1.3
3,834,701	+		GFF3792	0.40	-1.2
3,834,701	+		GFF3792	0.40	-0.3
3,834,709	-		GFF3792	0.41	+0.3
3,834,709	-		GFF3792	0.41	-0.8
3,834,718	-		GFF3792	0.42	-1.8
3,834,718	-		GFF3792	0.42	+0.2
3,834,751	-		GFF3792	0.48	-1.0
3,834,761	-		GFF3792	0.49	-1.1
3,834,771	-		GFF3792	0.51	-1.2
3,834,790	+		GFF3792	0.54	-1.8
3,834,796	+		GFF3792	0.55	-1.6
3,834,798	-		GFF3792	0.55	-1.4
3,834,800	+		GFF3792	0.56	+0.4
3,834,803	-		GFF3792	0.56	-0.4
3,834,805	+		GFF3792	0.56	+0.1
3,834,824	+		GFF3792	0.59	-0.6
3,834,824	+		GFF3792	0.59	-0.3
3,834,824	+		GFF3792	0.59	+0.2
3,834,832	+		GFF3792	0.61	+0.9
3,834,832	-		GFF3792	0.61	+0.2
3,834,832	-		GFF3792	0.61	-1.2
3,834,832	-		GFF3792	0.61	+0.0
3,834,848	-		GFF3792	0.63	-1.0
3,834,848	-		GFF3792	0.63	+0.9
3,834,877	-		GFF3792	0.68	-2.1
3,834,882	-		GFF3792	0.69	-0.3
3,834,882	-		GFF3792	0.69	-0.3
3,834,882	-		GFF3792	0.69	-0.1
3,834,887	-		GFF3792	0.69	-1.1
3,834,929	-		GFF3792	0.76	-0.9
3,834,944	+		GFF3792	0.78	-0.3
3,834,944	+		GFF3792	0.78	-1.3
3,834,953	-		GFF3792	0.80	-1.8
3,834,983	+		GFF3792	0.85	-0.8
3,834,989	+		GFF3792	0.86	-0.7
3,834,989	+		GFF3792	0.86	+0.3
3,834,997	-		GFF3792	0.87	-1.0
3,834,997	-		GFF3792	0.87	-1.4
3,834,997	-		GFF3792	0.87	-2.0
3,835,007	+		GFF3792	0.89	-1.1
3,835,012	+		GFF3792	0.89	+1.0
3,835,029	+				-0.4
3,835,051	+				-0.9
3,835,061	+				+1.2
3,835,084	-				-1.3
3,835,086	+				-2.6
3,835,094	-				-1.7
3,835,094	-				-1.5
3,835,097	+				-0.6
3,835,097	+				-1.7
3,835,105	-				-1.7
3,835,105	-				-1.9
3,835,105	-				-3.0
3,835,112	+				+0.3
3,835,152	-				-2.1
3,835,178	+				-1.4
3,835,187	+				-3.6
3,835,199	+				-2.7
3,835,207	-				-2.0
3,835,232	+				-1.5
3,835,232	+				-1.8
3,835,240	-		GFF3793	0.10	-2.3
3,835,254	+		GFF3793	0.11	-1.5
3,835,259	+		GFF3793	0.12	-1.5
3,835,272	+		GFF3793	0.13	-2.8
3,835,275	-		GFF3793	0.13	-2.6
3,835,280	-		GFF3793	0.13	-1.9
3,835,321	+		GFF3793	0.16	-1.5
3,835,321	+		GFF3793	0.16	-2.2
3,835,329	-		GFF3793	0.17	-2.8
3,835,355	-		GFF3793	0.19	-0.6
3,835,363	-		GFF3793	0.19	-1.5
3,835,392	+		GFF3793	0.21	-1.7
3,835,392	+		GFF3793	0.21	-1.5
3,835,394	+		GFF3793	0.22	-1.4
3,835,394	+		GFF3793	0.22	-1.8
3,835,394	+		GFF3793	0.22	-1.8
3,835,394	+		GFF3793	0.22	-2.3
3,835,394	+		GFF3793	0.22	-2.1
3,835,394	+		GFF3793	0.22	-0.6
3,835,394	+		GFF3793	0.22	-1.3
3,835,394	+		GFF3793	0.22	-2.7
3,835,394	+		GFF3793	0.22	-1.7
3,835,402	-		GFF3793	0.22	-0.7
3,835,402	-		GFF3793	0.22	-2.2
3,835,402	-		GFF3793	0.22	-2.9
3,835,402	-		GFF3793	0.22	-2.9
3,835,402	-		GFF3793	0.22	-1.9
3,835,410	-		GFF3793	0.23	-2.3
3,835,414	+		GFF3793	0.23	-1.6
3,835,422	-		GFF3793	0.24	-2.0
3,835,458	+		GFF3793	0.26	-1.8
3,835,474	+		GFF3793	0.27	-1.3
3,835,489	+		GFF3793	0.29	-2.4
3,835,513	+		GFF3793	0.30	-2.1
3,835,521	+		GFF3793	0.31	-2.0
3,835,521	+		GFF3793	0.31	-1.8
3,835,546	+		GFF3793	0.33	-1.4
3,835,552	+		GFF3793	0.33	-1.6
3,835,564	-		GFF3793	0.34	-2.6
3,835,678	+		GFF3793	0.42	-1.3
3,835,688	+		GFF3793	0.43	-2.1
3,835,688	+		GFF3793	0.43	-2.0
3,835,691	-		GFF3793	0.43	-1.9
3,835,696	-		GFF3793	0.44	-1.4
3,835,731	+		GFF3793	0.46	-1.4
3,835,731	+		GFF3793	0.46	-1.0
3,835,736	+		GFF3793	0.47	-1.9
3,835,739	-		GFF3793	0.47	-1.6
3,835,752	+		GFF3793	0.48	-2.3
3,835,752	+		GFF3793	0.48	-2.4
3,835,760	-		GFF3793	0.48	-2.0
3,835,761	+		GFF3793	0.48	-2.3
3,835,761	+		GFF3793	0.48	-1.3
3,835,761	+		GFF3793	0.48	-2.8
3,835,769	-		GFF3793	0.49	-1.6
3,835,771	+		GFF3793	0.49	-1.8
3,835,773	+		GFF3793	0.49	-2.9
3,835,774	-		GFF3793	0.49	-1.1
3,835,801	+		GFF3793	0.51	-2.8
3,835,815	+		GFF3793	0.52	-2.5
3,835,820	+		GFF3793	0.53	-1.7
3,835,843	-		GFF3793	0.54	-2.7
3,835,869	+		GFF3793	0.56	-1.9
3,835,872	-		GFF3793	0.57	-1.5
3,835,875	+		GFF3793	0.57	-1.7
3,835,877	-		GFF3793	0.57	-1.7
3,835,885	+		GFF3793	0.58	-1.3
3,835,942	+		GFF3793	0.62	-1.9
3,835,951	+		GFF3793	0.62	-3.0
3,835,988	-		GFF3793	0.65	-2.6
3,836,006	+		GFF3793	0.66	-2.4
3,836,014	-		GFF3793	0.67	-2.4
3,836,016	+		GFF3793	0.67	-1.7
3,836,033	+		GFF3793	0.68	-3.2
3,836,038	+		GFF3793	0.69	-2.3
3,836,038	+		GFF3793	0.69	-1.5
3,836,046	-		GFF3793	0.69	-1.7
3,836,046	-		GFF3793	0.69	-1.4
3,836,046	-		GFF3793	0.69	-2.1
3,836,046	-		GFF3793	0.69	-1.3
3,836,048	+		GFF3793	0.69	-1.5
3,836,079	+		GFF3793	0.72	-2.6
3,836,079	+		GFF3793	0.72	-3.9
3,836,088	+		GFF3793	0.72	-2.0
3,836,088	+		GFF3793	0.72	-2.5
3,836,093	+		GFF3793	0.73	-3.6
3,836,131	-		GFF3793	0.76	-1.5
3,836,138	+		GFF3793	0.76	-2.8
3,836,141	-		GFF3793	0.76	-2.0
3,836,146	-		GFF3793	0.77	-2.4
3,836,146	-		GFF3793	0.77	-1.8
3,836,206	-		GFF3793	0.81	-2.4
3,836,232	-		GFF3793	0.83	-2.3
3,836,246	+		GFF3793	0.84	-1.6
3,836,248	+		GFF3793	0.84	-2.6
3,836,277	+		GFF3793	0.86	-0.4
3,836,317	+		GFF3793	0.89	-2.4
3,836,318	+		GFF3793	0.89	-2.3
3,836,318	+		GFF3793	0.89	-1.9
3,836,326	+		GFF3793	0.90	-2.4
3,836,326	-		GFF3793	0.90	-1.4
3,836,338	+				-2.3
3,836,351	+				-2.0
3,836,351	+				-1.6
3,836,356	+				-2.7
3,836,359	-				-1.5
3,836,443	-				-3.0
3,836,452	+				-0.8
3,836,454	+				-1.9
3,836,454	+				-1.9
3,836,454	+				-1.9
3,836,454	+				-1.2
3,836,454	+				-1.3
3,836,454	+				-2.6
3,836,462	-				+2.1
3,836,462	-				-2.2
3,836,462	-				-1.5
3,836,462	-				-1.2
3,836,462	-				-1.4
3,836,468	-				+0.5
3,836,641	+		GFF3794	0.64	+0.5
3,836,641	+		GFF3794	0.64	+0.9
3,836,660	+		GFF3794	0.71	+1.2
3,836,661	-		GFF3794	0.71	-0.8
3,836,666	+		GFF3794	0.73	-2.1
3,836,674	-		GFF3794	0.76	-0.2
3,836,684	-		GFF3794	0.80	-1.3
3,836,684	-		GFF3794	0.80	+0.8
3,836,740	-				+0.4
3,836,753	+				-0.7
3,836,754	+				+0.4
3,836,754	+				-0.5
3,836,754	+				+0.3
3,836,754	+				+0.2
3,836,754	+				+1.1
3,836,754	+				+0.7
3,836,761	+				-0.6
3,836,762	-				-1.7
3,836,762	-				+0.8
3,836,762	-				-2.3
3,836,762	-				-1.9
3,836,762	-				-0.9
3,836,762	-				-0.8
3,836,797	+				-2.7
3,836,834	+				-2.4
3,836,846	+				-2.3
3,836,846	+				-3.4
3,836,847	+				-2.7
3,836,854	-				-3.0
3,836,855	+				-1.9
3,836,899	-		GFF3795	0.11	-2.6
3,836,901	+		GFF3795	0.11	-1.5
3,836,914	-		GFF3795	0.12	-1.7
3,836,914	-		GFF3795	0.12	-1.7
3,836,920	-		GFF3795	0.12	-1.4
3,836,945	+		GFF3795	0.14	-2.8
3,836,951	+		GFF3795	0.15	-1.3
3,836,953	-		GFF3795	0.15	-2.1
3,836,959	+		GFF3795	0.15	-1.8
3,836,978	+		GFF3795	0.17	-0.5
3,837,006	+		GFF3795	0.19	-1.4
3,837,085	-		GFF3795	0.25	-2.0
3,837,093	+		GFF3795	0.26	-0.5
3,837,136	-		GFF3795	0.29	-2.3
3,837,203	+		GFF3795	0.35	-1.4
3,837,286	+		GFF3795	0.41	-1.7
3,837,287	+		GFF3795	0.41	-2.2
3,837,302	+		GFF3795	0.43	-1.4
3,837,334	+		GFF3795	0.45	-2.6
3,837,342	+		GFF3795	0.46	-1.8
3,837,342	+		GFF3795	0.46	-1.5
3,837,342	+		GFF3795	0.46	-2.6
3,837,355	-		GFF3795	0.47	-1.7
3,837,390	-		GFF3795	0.50	-1.5
3,837,415	-		GFF3795	0.52	-2.0
3,837,435	-		GFF3795	0.53	-2.0
3,837,442	-		GFF3795	0.54	-1.4
3,837,455	+		GFF3795	0.55	-1.5
3,837,455	+		GFF3795	0.55	-1.7