Strain Fitness in Sphingobium sp. HT1-2 around GFF3720

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,759,990	-		GFF3717	0.71	+0.3
3,759,990	-		GFF3717	0.71	-0.5
3,760,002	+		GFF3717	0.73	-2.5
3,760,022	+		GFF3717	0.77	-0.0
3,760,037	-		GFF3717	0.79	+0.1
3,760,073	+		GFF3717	0.86	-1.1
3,760,081	-		GFF3717	0.87	+0.3
3,760,103	+				-0.6
3,760,113	+				-1.3
3,760,165	+				-0.5
3,760,191	+				-0.7
3,760,198	+				-1.0
3,760,206	+				-0.3
3,760,206	+				+0.3
3,760,206	-				+0.4
3,760,216	+				-0.9
3,760,254	+		GFF3718	0.21	+0.1
3,760,256	+		GFF3718	0.22	-0.4
3,760,258	+		GFF3718	0.22	+1.4
3,760,259	+		GFF3718	0.23	-1.7
3,760,259	+		GFF3718	0.23	+0.0
3,760,259	+		GFF3718	0.23	+0.5
3,760,266	-		GFF3718	0.25	-0.5
3,760,266	-		GFF3718	0.25	+0.6
3,760,292	+		GFF3718	0.35	-2.1
3,760,316	+		GFF3718	0.43	-0.5
3,760,334	-		GFF3718	0.50	-1.0
3,760,334	-		GFF3718	0.50	-0.6
3,760,334	-		GFF3718	0.50	-1.0
3,760,334	-		GFF3718	0.50	-0.3
3,760,359	-		GFF3718	0.59	-0.4
3,760,364	-		GFF3718	0.61	-1.1
3,760,384	+		GFF3718	0.68	+0.9
3,760,384	+		GFF3718	0.68	+1.0
3,760,384	+		GFF3718	0.68	+0.4
3,760,384	+		GFF3718	0.68	+0.4
3,760,384	+		GFF3718	0.68	+0.2
3,760,392	-		GFF3718	0.71	+1.5
3,760,392	-		GFF3718	0.71	+0.6
3,760,392	-		GFF3718	0.71	+0.1
3,760,392	-		GFF3718	0.71	-0.7
3,760,400	+		GFF3718	0.74	-0.8
3,760,408	+		GFF3718	0.77	-1.7
3,760,408	-		GFF3718	0.77	-0.3
3,760,460	-				-1.1
3,760,472	+				-0.9
3,760,478	-				-0.5
3,760,483	-				+0.1
3,760,500	+				+0.7
3,760,505	+				+0.3
3,760,510	+				-0.5
3,760,510	+				-1.4
3,760,510	+				-1.4
3,760,513	-				-1.1
3,760,513	-				-0.4
3,760,518	-				-1.5
3,760,519	-		GFF3719	0.10	+0.4
3,760,545	-		GFF3719	0.19	-0.6
3,760,547	+		GFF3719	0.19	-0.5
3,760,547	+		GFF3719	0.19	-0.1
3,760,547	+		GFF3719	0.19	-1.4
3,760,547	+		GFF3719	0.19	-1.6
3,760,555	-		GFF3719	0.22	-0.3
3,760,555	-		GFF3719	0.22	-2.2
3,760,565	-		GFF3719	0.25	+1.6
3,760,591	-		GFF3719	0.33	-0.4
3,760,594	+		GFF3719	0.34	-1.8
3,760,594	+		GFF3719	0.34	+0.2
3,760,594	+		GFF3719	0.34	-1.5
3,760,595	-		GFF3719	0.35	+0.3
3,760,595	-		GFF3719	0.35	+0.3
3,760,602	-		GFF3719	0.37	-1.7
3,760,602	-		GFF3719	0.37	+1.1
3,760,602	-		GFF3719	0.37	-1.7
3,760,602	-		GFF3719	0.37	+0.5
3,760,663	+		GFF3719	0.56	-0.6
3,760,663	+		GFF3719	0.56	-2.1
3,760,663	+		GFF3719	0.56	-0.4
3,760,692	-		GFF3719	0.66	-0.8
3,760,720	+		GFF3719	0.75	+0.4
3,760,721	+		GFF3719	0.75	-2.1
3,760,725	+		GFF3719	0.76	-0.4
3,760,733	-		GFF3719	0.79	+0.7
3,760,745	+		GFF3719	0.83	-1.8
3,760,745	+		GFF3719	0.83	-1.4
3,760,753	-		GFF3719	0.85	-0.0
3,760,761	-		GFF3719	0.88	+0.1
3,760,761	-		GFF3719	0.88	+0.7
3,760,787	+				-0.9
3,760,788	-				-0.3
3,760,820	+				+0.6
3,760,820	+				-1.0
3,760,820	+				+1.1
3,760,828	-				-0.4
3,760,906	+				-2.5
3,760,908	+				-0.8
3,760,912	-				+0.4
3,760,916	-				-0.3
3,760,935	+				-0.7
3,760,945	+				+0.5
3,760,953	-				-2.6
3,760,953	-				-0.9
3,760,962	+				+0.1
3,760,962	+				+0.3
3,760,962	+				-0.5
3,760,962	-				-2.6
3,760,970	-				+0.5
3,760,970	-				-0.5
3,761,003	+				-1.9
3,761,032	+		GFF3720	0.10	-0.5
3,761,032	+		GFF3720	0.10	-0.4
3,761,032	-		GFF3720	0.10	-0.0
3,761,033	-		GFF3720	0.11	-0.0
3,761,041	-		GFF3720	0.12	+0.3
3,761,042	+		GFF3720	0.12	+0.1
3,761,042	+		GFF3720	0.12	+1.4
3,761,042	+		GFF3720	0.12	-0.6
3,761,042	+		GFF3720	0.12	-0.3
3,761,050	-		GFF3720	0.13	+0.7
3,761,050	-		GFF3720	0.13	+1.6
3,761,050	-		GFF3720	0.13	-0.8
3,761,050	-		GFF3720	0.13	-0.7
3,761,050	-		GFF3720	0.13	+0.5
3,761,051	+		GFF3720	0.13	-0.2
3,761,061	+		GFF3720	0.14	+0.7
3,761,061	+		GFF3720	0.14	-0.7
3,761,064	-		GFF3720	0.14	+0.8
3,761,068	+		GFF3720	0.15	-0.5
3,761,069	-		GFF3720	0.15	-1.1
3,761,069	-		GFF3720	0.15	+0.4
3,761,072	+		GFF3720	0.15	-0.4
3,761,077	+		GFF3720	0.16	-0.1
3,761,120	+		GFF3720	0.21	-0.4
3,761,124	+		GFF3720	0.21	+1.5
3,761,124	+		GFF3720	0.21	+0.3
3,761,124	+		GFF3720	0.21	-1.5
3,761,124	+		GFF3720	0.21	+1.3
3,761,128	-		GFF3720	0.22	+0.4
3,761,137	+		GFF3720	0.23	+0.3
3,761,137	+		GFF3720	0.23	-1.8
3,761,142	+		GFF3720	0.24	-0.8
3,761,150	-		GFF3720	0.25	-0.0
3,761,182	+		GFF3720	0.28	+0.7
3,761,182	+		GFF3720	0.28	+0.0
3,761,182	+		GFF3720	0.28	-2.4
3,761,187	+		GFF3720	0.29	-0.7
3,761,187	+		GFF3720	0.29	-0.1
3,761,190	-		GFF3720	0.29	-0.7
3,761,190	-		GFF3720	0.29	+0.2
3,761,190	-		GFF3720	0.29	-0.4
3,761,190	-		GFF3720	0.29	+0.3
3,761,190	-		GFF3720	0.29	-0.2
3,761,190	-		GFF3720	0.29	-0.7
3,761,195	-		GFF3720	0.30	-0.1
3,761,195	-		GFF3720	0.30	+0.7
3,761,195	-		GFF3720	0.30	+0.8
3,761,214	+		GFF3720	0.32	-0.2
3,761,214	+		GFF3720	0.32	-0.7
3,761,222	-		GFF3720	0.33	-0.7
3,761,222	-		GFF3720	0.33	+1.3
3,761,229	+		GFF3720	0.34	-1.1
3,761,237	-		GFF3720	0.35	+1.5
3,761,242	+		GFF3720	0.36	-0.4
3,761,251	-		GFF3720	0.37	-0.8
3,761,251	-		GFF3720	0.37	+0.1
3,761,251	-		GFF3720	0.37	-1.0
3,761,251	-		GFF3720	0.37	+0.7
3,761,251	-		GFF3720	0.37	-2.6
3,761,251	-		GFF3720	0.37	+0.2
3,761,264	+		GFF3720	0.38	+0.4
3,761,264	+		GFF3720	0.38	+0.1
3,761,264	+		GFF3720	0.38	-0.4
3,761,264	+		GFF3720	0.38	+0.7
3,761,264	+		GFF3720	0.38	-0.2
3,761,264	+		GFF3720	0.38	-0.4
3,761,264	+		GFF3720	0.38	+0.0
3,761,264	+		GFF3720	0.38	+0.8
3,761,264	+		GFF3720	0.38	-0.8
3,761,264	+		GFF3720	0.38	+1.1
3,761,264	+		GFF3720	0.38	+0.0
3,761,264	+		GFF3720	0.38	-0.2
3,761,264	+		GFF3720	0.38	+0.1
3,761,264	+		GFF3720	0.38	+0.2
3,761,264	+		GFF3720	0.38	-1.9
3,761,264	+		GFF3720	0.38	-0.4
3,761,272	-		GFF3720	0.39	+0.1
3,761,272	-		GFF3720	0.39	-0.7
3,761,272	-		GFF3720	0.39	+1.6
3,761,272	-		GFF3720	0.39	+0.9
3,761,272	-		GFF3720	0.39	-1.1
3,761,272	-		GFF3720	0.39	-0.1
3,761,272	-		GFF3720	0.39	+0.1
3,761,272	-		GFF3720	0.39	-0.6
3,761,283	+		GFF3720	0.41	+0.9
3,761,283	+		GFF3720	0.41	-1.1
3,761,283	+		GFF3720	0.41	+0.7
3,761,291	-		GFF3720	0.41	-1.8
3,761,298	+		GFF3720	0.42	-1.1
3,761,306	-		GFF3720	0.43	+0.1
3,761,355	-		GFF3720	0.49	-0.5
3,761,355	-		GFF3720	0.49	-2.7
3,761,378	-		GFF3720	0.52	-2.1
3,761,420	-		GFF3720	0.57	+0.9
3,761,466	+		GFF3720	0.62	-0.9
3,761,504	+		GFF3720	0.67	-0.0
3,761,509	+		GFF3720	0.68	-1.6
3,761,509	+		GFF3720	0.68	+1.0
3,761,514	+		GFF3720	0.68	+1.2
3,761,514	+		GFF3720	0.68	+0.3
3,761,522	-		GFF3720	0.69	-0.8
3,761,522	-		GFF3720	0.69	+0.7
3,761,523	-		GFF3720	0.69	-0.4
3,761,529	-		GFF3720	0.70	-1.0
3,761,583	+		GFF3720	0.76	-0.3
3,761,629	+		GFF3720	0.82	+0.8
3,761,632	-		GFF3720	0.82	-1.5
3,761,632	-		GFF3720	0.82	-0.7
3,761,634	+		GFF3720	0.83	-0.4
3,761,634	+		GFF3720	0.83	+0.5
3,761,634	+		GFF3720	0.83	+1.3
3,761,634	+		GFF3720	0.83	-1.9
3,761,634	+		GFF3720	0.83	-0.3
3,761,642	+		GFF3720	0.84	+0.1
3,761,642	-		GFF3720	0.84	-0.3
3,761,651	+		GFF3720	0.85	-0.6
3,761,661	+		GFF3720	0.86	-1.2
3,761,666	+		GFF3720	0.86	-1.8
3,761,676	+		GFF3720	0.88	+0.1
3,761,691	+		GFF3720	0.89	-1.0
3,761,712	-				-1.6
3,761,728	-				-0.2
3,761,733	-				-1.7
3,761,745	+				+1.0
3,761,748	-				-0.8
3,761,748	-				+1.3
3,761,753	-				+0.6
3,761,758	+				-1.5
3,761,758	-				-1.2
3,761,766	+				+0.9
3,761,766	+				-1.1
3,761,766	-				-0.2
3,761,772	-				-0.4
3,761,787	+				-0.8
3,761,792	+				-0.4
3,761,795	+				+1.4
3,761,795	-				+1.7
3,761,800	-				-0.6
3,761,815	+				+1.2
3,761,820	+				+0.2
3,761,823	-				-1.2
3,761,831	+				+0.9
3,761,842	+				-0.1
3,761,842	+				+0.3
3,761,850	-				-2.0
3,761,850	-				-0.4
3,761,850	-				-0.0
3,761,857	+				+0.7
3,761,874	+				+1.9
3,761,874	+				+0.7
3,761,874	+				+1.3
3,761,874	+				-0.6
3,761,874	+				-0.5
3,761,874	+				+0.4
3,761,874	+				-0.5
3,761,874	+				+1.5
3,761,874	+				-0.3
3,761,874	+				-1.1
3,761,874	+				-0.7
3,761,874	+				+0.9
3,761,874	+				-0.4
3,761,874	+				-0.4
3,761,880	-				-1.7
3,761,882	-				-1.3
3,761,882	-				+0.4
3,761,882	-				+0.3
3,761,882	-				-2.5
3,761,882	-				-0.1
3,761,882	-				+0.3
3,761,936	-				+1.4
3,761,939	+				-0.3
3,761,939	+				+1.6
3,761,939	+				-0.3
3,761,939	+				-1.2
3,761,939	+				-0.3
3,761,939	+				+0.8
3,761,939	+				+0.6
3,761,939	+				+0.6
3,761,939	+				-0.5
3,761,947	+				+0.8
3,761,947	-				-0.2
3,761,947	-				-1.8
3,761,947	-				+0.2
3,761,949	+				-0.5
3,761,949	+				+0.6
3,761,957	-				+0.6
3,761,957	-				-0.3
3,761,961	+				+0.1
3,761,967	-				+1.6
3,761,967	-				-1.8
3,761,967	-				+2.2
3,761,969	-				-0.5
3,761,977	-				+1.4
3,761,977	-				-0.9
3,762,004	+		GFF3721	0.10	+0.5
3,762,004	+		GFF3721	0.10	-0.3
3,762,004	+		GFF3721	0.10	+0.5
3,762,004	+		GFF3721	0.10	+1.1
3,762,004	+		GFF3721	0.10	+0.4
3,762,004	+		GFF3721	0.10	+1.4
3,762,004	+		GFF3721	0.10	+0.3
3,762,004	+		GFF3721	0.10	+0.3
3,762,004	+		GFF3721	0.10	+0.5
3,762,004	+		GFF3721	0.10	+0.7
3,762,012	+		GFF3721	0.11	-2.8
3,762,012	+		GFF3721	0.11	-0.4
3,762,012	-		GFF3721	0.11	-0.1
3,762,012	-		GFF3721	0.11	-0.1
3,762,012	-		GFF3721	0.11	+0.2
3,762,012	-		GFF3721	0.11	-0.5
3,762,012	-		GFF3721	0.11	-2.4
3,762,012	-		GFF3721	0.11	-0.2
3,762,012	-		GFF3721	0.11	+0.7
3,762,012	-		GFF3721	0.11	-1.4
3,762,019	+		GFF3721	0.11	-0.4
3,762,027	-		GFF3721	0.11	-1.7
3,762,027	-		GFF3721	0.11	-0.6
3,762,030	-		GFF3721	0.11	+0.4
3,762,036	+		GFF3721	0.12	+1.3
3,762,041	+		GFF3721	0.12	+0.8
3,762,059	-		GFF3721	0.13	-0.4
3,762,066	+		GFF3721	0.13	-1.4
3,762,069	-		GFF3721	0.13	-0.7
3,762,069	-		GFF3721	0.13	-2.8
3,762,073	+		GFF3721	0.13	+0.8
3,762,073	+		GFF3721	0.13	-0.6
3,762,074	-		GFF3721	0.14	-0.6
3,762,097	+		GFF3721	0.15	-1.1
3,762,145	+		GFF3721	0.17	-0.6
3,762,162	-		GFF3721	0.18	-0.1
3,762,177	-		GFF3721	0.18	-1.2
3,762,187	-		GFF3721	0.19	-1.5
3,762,193	-		GFF3721	0.19	-2.8
3,762,206	-		GFF3721	0.20	-1.3
3,762,218	+		GFF3721	0.20	-0.0
3,762,226	+		GFF3721	0.21	+2.0
3,762,226	-		GFF3721	0.21	+1.4
3,762,226	-		GFF3721	0.21	-0.5
3,762,236	+		GFF3721	0.21	-0.2
3,762,236	+		GFF3721	0.21	+0.0
3,762,236	+		GFF3721	0.21	+0.1
3,762,236	+		GFF3721	0.21	+1.3
3,762,236	+		GFF3721	0.21	-0.8
3,762,244	-		GFF3721	0.22	+0.4
3,762,244	-		GFF3721	0.22	-0.3
3,762,249	-		GFF3721	0.22	+0.0
3,762,259	+		GFF3721	0.22	-0.1
3,762,263	+		GFF3721	0.22	+0.9
3,762,271	-		GFF3721	0.23	-1.1
3,762,278	+		GFF3721	0.23	-0.3
3,762,295	+		GFF3721	0.24	-0.8
3,762,305	+		GFF3721	0.24	-0.3
3,762,314	+		GFF3721	0.25	+0.7
3,762,322	-		GFF3721	0.25	-0.1
3,762,322	-		GFF3721	0.25	+0.0
3,762,337	-		GFF3721	0.26	+0.2
3,762,386	-		GFF3721	0.28	-1.1
3,762,395	-		GFF3721	0.29	+0.4
3,762,421	-		GFF3721	0.30	-0.4
3,762,443	+		GFF3721	0.31	-0.7
3,762,443	+		GFF3721	0.31	+0.3
3,762,449	+		GFF3721	0.31	-0.9
3,762,449	+		GFF3721	0.31	-0.1
3,762,451	-		GFF3721	0.31	+0.3
3,762,451	-		GFF3721	0.31	-1.2
3,762,456	-		GFF3721	0.32	-1.8
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