Strain Fitness in Sphingobium sp. HT1-2 around GFF3699

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,742,620	+				-0.7
3,742,620	+				-3.1
3,742,620	+				-1.1
3,742,620	+				-0.0
3,742,628	+				-0.5
3,742,636	-				-1.8
3,742,638	+				-0.6
3,742,640	+				-0.9
3,742,640	+				-0.3
3,742,640	+				-0.0
3,742,646	-				+0.6
3,742,646	-				-2.5
3,742,648	-				-1.2
3,742,661	+				-0.4
3,742,661	+				-0.2
3,742,705	+				-0.3
3,742,710	+				+0.3
3,742,713	-				-1.9
3,742,713	-				-1.3
3,742,716	+				+1.1
3,742,718	+				-1.0
3,742,731	+				+0.4
3,742,731	+				+0.2
3,742,731	+				+0.1
3,742,739	-				+0.3
3,742,753	+				-1.6
3,742,754	+				+0.3
3,742,762	-				+0.5
3,742,763	-				-0.0
3,742,768	-				-1.0
3,742,772	+				-1.8
3,742,784	-				-0.5
3,742,784	-				+1.3
3,742,802	+				+1.3
3,742,802	+				-1.7
3,742,802	+				-0.1
3,742,810	-				-0.3
3,742,810	-				+0.5
3,742,810	-				-2.2
3,742,810	-				-0.0
3,742,810	-				-0.7
3,742,841	+				-1.1
3,742,856	-				-0.9
3,742,856	-				-1.9
3,742,859	+				-1.5
3,742,871	+				-1.1
3,742,873	+				-0.6
3,742,880	+		GFF3698	0.11	+2.1
3,742,881	-		GFF3698	0.11	-0.8
3,742,890	+		GFF3698	0.12	+0.8
3,742,898	+		GFF3698	0.14	-1.0
3,742,898	+		GFF3698	0.14	-0.6
3,742,898	+		GFF3698	0.14	-0.0
3,742,898	-		GFF3698	0.14	-0.6
3,742,906	-		GFF3698	0.15	-0.2
3,742,906	-		GFF3698	0.15	-1.9
3,742,913	+		GFF3698	0.16	+0.7
3,742,953	+		GFF3698	0.22	-0.8
3,742,961	-		GFF3698	0.23	-1.3
3,742,970	+		GFF3698	0.24	-3.2
3,742,978	-		GFF3698	0.25	-0.3
3,742,983	-		GFF3698	0.26	-1.2
3,742,998	-		GFF3698	0.28	-1.8
3,742,998	-		GFF3698	0.28	-0.4
3,743,008	-		GFF3698	0.30	+0.5
3,743,010	+		GFF3698	0.30	-0.3
3,743,018	-		GFF3698	0.31	-0.1
3,743,045	-		GFF3698	0.35	-0.3
3,743,045	-		GFF3698	0.35	+0.4
3,743,047	-		GFF3698	0.36	-1.5
3,743,107	-		GFF3698	0.45	+0.3
3,743,113	+		GFF3698	0.46	-0.4
3,743,121	-		GFF3698	0.47	-0.7
3,743,121	-		GFF3698	0.47	+0.7
3,743,126	-		GFF3698	0.47	-1.1
3,743,128	+		GFF3698	0.48	-1.3
3,743,133	+		GFF3698	0.49	-0.9
3,743,133	+		GFF3698	0.49	-0.9
3,743,149	-		GFF3698	0.51	-0.0
3,743,152	-		GFF3698	0.51	+0.2
3,743,176	-		GFF3698	0.55	+0.2
3,743,176	-		GFF3698	0.55	-0.4
3,743,202	-		GFF3698	0.59	-0.3
3,743,205	+		GFF3698	0.59	+2.0
3,743,205	+		GFF3698	0.59	-0.5
3,743,205	+		GFF3698	0.59	+0.4
3,743,213	-		GFF3698	0.60	-0.2
3,743,213	-		GFF3698	0.60	+1.9
3,743,216	+		GFF3698	0.61	-1.3
3,743,234	-		GFF3698	0.64	+0.4
3,743,245	+		GFF3698	0.65	-0.7
3,743,271	-		GFF3698	0.69	+0.3
3,743,295	+		GFF3698	0.73	-2.1
3,743,300	+		GFF3698	0.73	-1.6
3,743,303	-		GFF3698	0.74	+0.7
3,743,303	-		GFF3698	0.74	-0.2
3,743,307	+		GFF3698	0.74	+0.2
3,743,307	+		GFF3698	0.74	-0.3
3,743,307	+		GFF3698	0.74	-1.3
3,743,308	-		GFF3698	0.75	+0.1
3,743,315	-		GFF3698	0.76	+0.7
3,743,315	-		GFF3698	0.76	-1.8
3,743,315	-		GFF3698	0.76	-2.9
3,743,315	-		GFF3698	0.76	-0.3
3,743,315	-		GFF3698	0.76	+0.9
3,743,315	-		GFF3698	0.76	+0.8
3,743,360	-		GFF3698	0.82	-0.3
3,743,364	+		GFF3698	0.83	-0.3
3,743,364	+		GFF3698	0.83	-1.3
3,743,364	+		GFF3698	0.83	+1.1
3,743,364	+		GFF3698	0.83	+0.9
3,743,364	+		GFF3698	0.83	-2.1
3,743,371	+		GFF3698	0.84	+0.4
3,743,372	-		GFF3698	0.84	+0.2
3,743,372	-		GFF3698	0.84	-0.7
3,743,372	-		GFF3698	0.84	-0.1
3,743,405	-		GFF3698	0.89	-3.0
3,743,411	-				-1.5
3,743,432	+				+0.9
3,743,439	-				-0.5
3,743,482	+				+1.1
3,743,543	+				-1.5
3,743,557	+				+0.3
3,743,557	+				+0.3
3,743,566	-				+0.4
3,743,581	-				-0.6
3,743,582	+				-2.3
3,743,583	+				+0.5
3,743,590	-				+0.0
3,743,590	-				-1.4
3,743,590	-				-1.9
3,743,590	-				-0.3
3,743,590	-				-0.4
3,743,612	+				+0.3
3,743,616	+				-2.1
3,743,620	+				+0.6
3,743,620	-				+0.2
3,743,685	-				+1.3
3,743,708	-		GFF3699	0.12	-0.2
3,743,735	-		GFF3699	0.16	+0.5
3,743,767	-		GFF3699	0.21	+0.9
3,743,775	+		GFF3699	0.22	+1.4
3,743,777	-		GFF3699	0.22	-0.2
3,743,800	+		GFF3699	0.25	-2.1
3,743,805	+		GFF3699	0.26	-0.3
3,743,813	-		GFF3699	0.27	-1.0
3,743,841	+		GFF3699	0.31	+0.5
3,743,860	-		GFF3699	0.34	-0.8
3,743,876	-		GFF3699	0.36	-1.0
3,743,876	-		GFF3699	0.36	-0.5
3,743,876	-		GFF3699	0.36	-0.4
3,743,877	+		GFF3699	0.36	-0.8
3,743,903	-		GFF3699	0.40	-1.7
3,743,931	-		GFF3699	0.43	-0.2
3,743,931	-		GFF3699	0.43	+0.0
3,743,931	-		GFF3699	0.43	+0.9
3,743,939	-		GFF3699	0.45	+0.6
3,743,967	-		GFF3699	0.48	-0.6
3,743,972	-		GFF3699	0.49	-0.2
3,744,023	+		GFF3699	0.56	-0.1
3,744,023	+		GFF3699	0.56	-0.4
3,744,023	+		GFF3699	0.56	+0.3
3,744,023	+		GFF3699	0.56	+0.2
3,744,023	+		GFF3699	0.56	+0.5
3,744,023	+		GFF3699	0.56	+0.1
3,744,031	-		GFF3699	0.57	+1.1
3,744,031	-		GFF3699	0.57	-0.1
3,744,031	-		GFF3699	0.57	+0.8
3,744,031	-		GFF3699	0.57	+0.9
3,744,031	-		GFF3699	0.57	-0.5
3,744,046	+		GFF3699	0.59	+0.4
3,744,078	-		GFF3699	0.64	+0.9
3,744,122	+		GFF3699	0.70	+0.1
3,744,122	+		GFF3699	0.70	-0.3
3,744,124	-		GFF3699	0.70	-0.1
3,744,154	+		GFF3699	0.74	+0.3
3,744,160	-		GFF3699	0.75	+0.7
3,744,172	+		GFF3699	0.77	+0.2
3,744,172	+		GFF3699	0.77	-0.9
3,744,177	+		GFF3699	0.78	-0.5
3,744,177	+		GFF3699	0.78	-1.7
3,744,177	+		GFF3699	0.78	-0.9
3,744,177	+		GFF3699	0.78	-0.8
3,744,178	-		GFF3699	0.78	-1.0
3,744,182	+		GFF3699	0.78	+0.4
3,744,182	+		GFF3699	0.78	+0.6
3,744,182	+		GFF3699	0.78	-1.6
3,744,182	+		GFF3699	0.78	-0.9
3,744,185	-		GFF3699	0.79	-1.6
3,744,185	-		GFF3699	0.79	-2.8
3,744,188	-		GFF3699	0.79	-0.4
3,744,190	-		GFF3699	0.79	-1.5
3,744,204	+		GFF3699	0.81	+0.2
3,744,211	-		GFF3699	0.82	-0.1
3,744,239	-		GFF3699	0.86	-0.8
3,744,276	-				-0.2
3,744,280	+				-0.9
3,744,280	+				-0.5
3,744,280	+				+0.3
3,744,280	+				-0.1
3,744,280	+				-0.3
3,744,280	+				-1.1
3,744,280	+				-0.6
3,744,280	+				+1.6
3,744,280	+				-0.3
3,744,280	+				+1.8
3,744,280	+				-0.5
3,744,280	+				+0.8
3,744,280	+				+1.2
3,744,280	+				-2.1
3,744,280	+				-1.0
3,744,280	+				+0.3
3,744,280	+				-0.6
3,744,280	+				-0.6
3,744,280	+				-0.1
3,744,280	+				-0.5
3,744,280	+				-1.6
3,744,280	+				-1.0
3,744,280	+				+0.5
3,744,280	+				-0.3
3,744,280	+				+0.1
3,744,280	+				-0.3
3,744,285	+				-1.0
3,744,288	-				-0.9
3,744,288	-				-1.0
3,744,288	-				-1.4
3,744,288	-				-1.9
3,744,288	-				-1.2
3,744,288	-				+0.4
3,744,288	-				+0.0
3,744,288	-				-0.3
3,744,288	-				-1.5
3,744,288	-				-0.6
3,744,288	-				-3.5
3,744,288	-				-0.8
3,744,288	-				-0.4
3,744,288	-				-2.2
3,744,288	-				+0.5
3,744,289	+				-0.0
3,744,301	+				+1.3
3,744,303	+				+0.1
3,744,303	+				-0.0
3,744,311	-				+1.0
3,744,311	-				-1.0
3,744,311	-				-0.2
3,744,311	-				+0.5
3,744,315	+				-0.9
3,744,322	+				-0.1
3,744,322	+				-1.1
3,744,325	-				-0.3
3,744,330	-				-2.9
3,744,332	+				+0.2
3,744,340	-				-2.4
3,744,340	-				-1.2
3,744,375	+				+0.4
3,744,392	+				+0.4
3,744,402	+				-0.9
3,744,410	-				-0.5
3,744,410	-				-0.8
3,744,410	-				-0.4
3,744,436	-				-0.6
3,744,455	-				-0.5
3,744,465	-				+0.8
3,744,476	+		GFF3700	0.10	-0.1
3,744,495	+		GFF3700	0.12	-2.9
3,744,505	+		GFF3700	0.12	-1.4
3,744,505	+		GFF3700	0.12	-1.2
3,744,505	+		GFF3700	0.12	-0.8
3,744,505	+		GFF3700	0.12	+0.6
3,744,513	-		GFF3700	0.13	+0.1
3,744,559	+		GFF3700	0.16	-1.8
3,744,559	+		GFF3700	0.16	-0.0
3,744,596	+		GFF3700	0.19	-0.7
3,744,623	-		GFF3700	0.21	-0.5
3,744,623	-		GFF3700	0.21	+0.6
3,744,673	-		GFF3700	0.25	+1.4
3,744,710	+		GFF3700	0.27	+0.5
3,744,712	+		GFF3700	0.28	+1.7
3,744,722	+		GFF3700	0.28	-1.3
3,744,727	+		GFF3700	0.29	-0.9
3,744,730	-		GFF3700	0.29	-1.6
3,744,730	-		GFF3700	0.29	-2.0
3,744,730	-		GFF3700	0.29	-1.0
3,744,738	-		GFF3700	0.29	-0.6
3,744,775	-		GFF3700	0.32	+0.2
3,744,780	-		GFF3700	0.32	-0.1
3,744,800	+		GFF3700	0.34	-2.2
3,744,808	-		GFF3700	0.34	-0.0
3,744,808	-		GFF3700	0.34	+0.0
3,744,808	-		GFF3700	0.34	+0.9
3,744,808	-		GFF3700	0.34	-0.2
3,744,808	-		GFF3700	0.34	+0.2
3,744,831	+		GFF3700	0.36	+0.9
3,744,884	+		GFF3700	0.40	-0.9
3,744,898	-		GFF3700	0.41	-2.0
3,744,905	+		GFF3700	0.42	-1.7
3,744,905	+		GFF3700	0.42	+0.8
3,744,913	-		GFF3700	0.42	-0.7
3,744,918	+		GFF3700	0.43	-0.3
3,744,918	+		GFF3700	0.43	+0.6
3,744,918	+		GFF3700	0.43	+0.9
3,744,918	+		GFF3700	0.43	+0.3
3,744,918	+		GFF3700	0.43	-0.5
3,744,918	+		GFF3700	0.43	+0.5
3,744,918	+		GFF3700	0.43	-0.2
3,744,918	+		GFF3700	0.43	-0.5
3,744,918	+		GFF3700	0.43	-0.6
3,744,921	-		GFF3700	0.43	-0.5
3,744,926	-		GFF3700	0.43	-1.9
3,744,926	-		GFF3700	0.43	-0.5
3,744,926	-		GFF3700	0.43	+0.1
3,744,926	-		GFF3700	0.43	-0.6
3,744,928	+		GFF3700	0.43	-1.3
3,744,928	+		GFF3700	0.43	+1.1
3,744,947	+		GFF3700	0.45	+0.7
3,744,947	+		GFF3700	0.45	-0.8
3,744,960	+		GFF3700	0.46	+0.4
3,744,987	+		GFF3700	0.48	-0.4
3,745,028	-		GFF3700	0.51	+1.4
3,745,028	-		GFF3700	0.51	-0.6
3,745,076	+		GFF3700	0.54	+0.8
3,745,079	-		GFF3700	0.54	+0.1
3,745,079	-		GFF3700	0.54	-2.5
3,745,086	+		GFF3700	0.55	-1.1
3,745,107	+		GFF3700	0.56	-0.1
3,745,118	+		GFF3700	0.57	-0.7
3,745,118	+		GFF3700	0.57	+1.3
3,745,123	+		GFF3700	0.57	-3.2
3,745,125	+		GFF3700	0.58	-0.8
3,745,125	-		GFF3700	0.58	+0.5
3,745,125	-		GFF3700	0.58	+1.6
3,745,126	-		GFF3700	0.58	+0.0
3,745,126	-		GFF3700	0.58	-1.6
3,745,126	-		GFF3700	0.58	-2.0
3,745,126	-		GFF3700	0.58	-1.8
3,745,126	-		GFF3700	0.58	-1.4
3,745,142	+		GFF3700	0.59	+0.1
3,745,152	-		GFF3700	0.60	+0.0
3,745,179	+		GFF3700	0.61	-0.3
3,745,239	+		GFF3700	0.66	+0.2
3,745,247	-		GFF3700	0.66	-0.6
3,745,247	-		GFF3700	0.66	-0.8
3,745,258	+		GFF3700	0.67	+0.1
3,745,263	+		GFF3700	0.68	-0.1
3,745,266	+		GFF3700	0.68	-1.7
3,745,276	+		GFF3700	0.69	-0.8
3,745,283	+		GFF3700	0.69	-0.3
3,745,284	-		GFF3700	0.69	-0.3
3,745,284	-		GFF3700	0.69	+1.0
3,745,291	-		GFF3700	0.70	-2.0
3,745,291	-		GFF3700	0.70	+0.2
3,745,296	-		GFF3700	0.70	-0.3
3,745,312	+		GFF3700	0.71	-0.5
3,745,320	-		GFF3700	0.72	-1.4
3,745,320	-		GFF3700	0.72	+0.9