Strain Fitness in Sphingobium sp. HT1-2 around GFF3690

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,734,944	-		GFF3689	0.69	-2.6
3,734,957	+		GFF3689	0.70	-0.9
3,734,964	+		GFF3689	0.70	-0.2
3,734,972	-		GFF3689	0.70	+0.3
3,734,978	+		GFF3689	0.70	-1.1
3,735,013	-		GFF3689	0.72	-0.2
3,735,016	+		GFF3689	0.72	-0.1
3,735,019	-		GFF3689	0.72	-0.6
3,735,026	+		GFF3689	0.72	+0.9
3,735,045	+		GFF3689	0.73	-1.3
3,735,045	+		GFF3689	0.73	-0.3
3,735,053	-		GFF3689	0.73	-1.3
3,735,053	-		GFF3689	0.73	+0.3
3,735,053	-		GFF3689	0.73	+0.6
3,735,061	+		GFF3689	0.73	+0.6
3,735,061	-		GFF3689	0.73	+0.1
3,735,061	-		GFF3689	0.73	-0.4
3,735,069	-		GFF3689	0.74	+0.4
3,735,101	-		GFF3689	0.75	+0.2
3,735,101	-		GFF3689	0.75	-0.9
3,735,109	+		GFF3689	0.75	-0.7
3,735,109	+		GFF3689	0.75	+0.2
3,735,117	-		GFF3689	0.75	-0.9
3,735,117	-		GFF3689	0.75	+0.9
3,735,125	+		GFF3689	0.76	+0.5
3,735,192	+		GFF3689	0.78	-2.1
3,735,192	+		GFF3689	0.78	+0.5
3,735,194	+		GFF3689	0.78	-0.5
3,735,215	+		GFF3689	0.79	+0.3
3,735,217	+		GFF3689	0.79	+0.4
3,735,227	+		GFF3689	0.79	+1.0
3,735,276	-		GFF3689	0.81	+0.6
3,735,294	+		GFF3689	0.81	-1.1
3,735,316	+		GFF3689	0.82	-1.5
3,735,329	+		GFF3689	0.83	-0.4
3,735,332	-		GFF3689	0.83	+0.4
3,735,334	+		GFF3689	0.83	-0.1
3,735,337	-		GFF3689	0.83	+0.3
3,735,337	-		GFF3689	0.83	-0.3
3,735,342	-		GFF3689	0.83	+0.8
3,735,342	-		GFF3689	0.83	-0.3
3,735,365	+		GFF3689	0.84	+0.6
3,735,365	+		GFF3689	0.84	-0.4
3,735,365	+		GFF3689	0.84	-1.4
3,735,373	-		GFF3689	0.84	+1.1
3,735,373	-		GFF3689	0.84	-1.0
3,735,400	-		GFF3689	0.85	-1.9
3,735,413	+		GFF3689	0.86	-0.8
3,735,421	-		GFF3689	0.86	+0.5
3,735,423	+		GFF3689	0.86	-1.1
3,735,423	+		GFF3689	0.86	+0.2
3,735,423	+		GFF3689	0.86	+0.4
3,735,423	+		GFF3689	0.86	-2.1
3,735,431	-		GFF3689	0.86	+0.2
3,735,439	-		GFF3689	0.86	+0.8
3,735,444	+		GFF3689	0.87	+0.2
3,735,469	-		GFF3689	0.87	-1.0
3,735,504	+		GFF3689	0.89	+0.4
3,735,509	+		GFF3689	0.89	-1.1
3,735,514	+		GFF3689	0.89	-0.0
3,735,527	+		GFF3689	0.89	-1.6
3,735,527	+		GFF3689	0.89	-1.7
3,735,527	+		GFF3689	0.89	-2.1
3,735,527	+		GFF3689	0.89	-0.3
3,735,527	+		GFF3689	0.89	-1.3
3,735,527	+		GFF3689	0.89	+0.4
3,735,535	-		GFF3689	0.90	-0.1
3,735,535	-		GFF3689	0.90	-1.0
3,735,535	-		GFF3689	0.90	-0.8
3,735,546	-				+0.6
3,735,554	+				+0.1
3,735,559	+				-0.9
3,735,560	+				+0.1
3,735,572	-				+0.2
3,735,582	+				-1.6
3,735,594	+				-0.5
3,735,598	-				-1.6
3,735,647	+				-1.3
3,735,655	-				+0.1
3,735,659	+				-0.3
3,735,664	+				-1.1
3,735,681	-				+0.3
3,735,692	+				+0.3
3,735,692	+				-1.1
3,735,699	-				-0.5
3,735,717	+				+0.4
3,735,735	+				-2.3
3,735,735	+				-1.9
3,735,740	+				-0.5
3,735,741	+				-0.6
3,735,745	+				-1.5
3,735,745	+				+0.3
3,735,745	+				+0.1
3,735,745	+				+0.7
3,735,745	+				-0.1
3,735,745	+				+0.9
3,735,745	+				-0.4
3,735,745	+				-0.1
3,735,753	-				-0.1
3,735,753	-				-0.0
3,735,753	-				+1.6
3,735,753	-				-2.4
3,735,753	-				-0.0
3,735,753	-				-1.1
3,735,771	+				-1.1
3,735,771	+				-0.8
3,735,773	+				-1.6
3,735,779	-				-1.7
3,735,783	+				+0.3
3,735,783	+				+0.1
3,735,783	+				+0.7
3,735,786	+				-0.2
3,735,789	-				-1.3
3,735,791	+				-1.1
3,735,791	-				-1.5
3,735,791	-				-1.3
3,735,794	-				+0.3
3,735,794	-				+0.6
3,735,829	-				-0.4
3,735,833	-				-0.2
3,735,833	-				-1.1
3,735,834	+				-1.0
3,735,834	+				+1.1
3,735,834	+				-0.3
3,735,834	+				+0.5
3,735,834	+				-2.4
3,735,842	-				+0.1
3,735,842	-				-0.0
3,735,842	-				-0.3
3,735,842	-				+0.9
3,735,842	-				+0.1
3,735,842	-				+1.7
3,735,883	+				-1.4
3,735,900	-				-0.5
3,735,955	+				-1.0
3,735,955	+				-0.7
3,735,955	+				+1.0
3,735,955	+				+1.6
3,735,963	-				-0.4
3,735,979	+				-0.3
3,735,987	-				-1.7
3,735,996	+				-0.1
3,735,996	+				-0.4
3,736,004	-				-0.9
3,736,006	+				-1.3
3,736,014	-		GFF3690	0.11	-0.4
3,736,023	+		GFF3690	0.12	+0.4
3,736,023	+		GFF3690	0.12	+0.2
3,736,031	+		GFF3690	0.12	-1.2
3,736,031	+		GFF3690	0.12	-0.4
3,736,059	-		GFF3690	0.15	-1.6
3,736,064	+		GFF3690	0.16	+0.8
3,736,064	+		GFF3690	0.16	-0.3
3,736,065	+		GFF3690	0.16	+0.2
3,736,065	+		GFF3690	0.16	+0.4
3,736,065	+		GFF3690	0.16	+1.2
3,736,072	-		GFF3690	0.17	-0.1
3,736,072	-		GFF3690	0.17	-0.4
3,736,072	-		GFF3690	0.17	+0.1
3,736,072	-		GFF3690	0.17	-0.5
3,736,073	-		GFF3690	0.17	+0.7
3,736,082	-		GFF3690	0.18	-3.4
3,736,099	+		GFF3690	0.20	-1.7
3,736,139	+		GFF3690	0.24	-1.6
3,736,143	+		GFF3690	0.24	+1.1
3,736,143	+		GFF3690	0.24	-2.2
3,736,143	+		GFF3690	0.24	-0.5
3,736,146	-		GFF3690	0.25	-0.5
3,736,151	-		GFF3690	0.25	-0.0
3,736,151	-		GFF3690	0.25	-0.1
3,736,151	-		GFF3690	0.25	-0.9
3,736,151	-		GFF3690	0.25	-0.1
3,736,156	-		GFF3690	0.26	+0.4
3,736,160	-		GFF3690	0.26	-0.9
3,736,181	-		GFF3690	0.29	-1.3
3,736,182	-		GFF3690	0.29	-0.8
3,736,186	-		GFF3690	0.29	+0.3
3,736,206	-		GFF3690	0.31	+0.4
3,736,206	-		GFF3690	0.31	+0.5
3,736,222	+		GFF3690	0.33	-0.3
3,736,222	+		GFF3690	0.33	-1.9
3,736,225	-		GFF3690	0.33	-1.6
3,736,240	-		GFF3690	0.35	-0.4
3,736,244	-		GFF3690	0.35	+0.0
3,736,249	+		GFF3690	0.36	-0.2
3,736,249	+		GFF3690	0.36	-0.9
3,736,249	+		GFF3690	0.36	+0.7
3,736,257	-		GFF3690	0.37	-0.5
3,736,261	-		GFF3690	0.37	-0.4
3,736,307	+		GFF3690	0.42	-0.3
3,736,336	+		GFF3690	0.45	-0.8
3,736,362	+		GFF3690	0.48	+0.1
3,736,362	+		GFF3690	0.48	-1.4
3,736,369	+		GFF3690	0.49	-1.8
3,736,370	-		GFF3690	0.49	-1.0
3,736,370	-		GFF3690	0.49	+0.3
3,736,370	-		GFF3690	0.49	-0.3
3,736,376	+		GFF3690	0.49	-0.2
3,736,376	+		GFF3690	0.49	-0.7
3,736,376	+		GFF3690	0.49	-0.0
3,736,376	+		GFF3690	0.49	-0.5
3,736,384	-		GFF3690	0.50	+0.1
3,736,384	-		GFF3690	0.50	+0.2
3,736,384	-		GFF3690	0.50	-0.7
3,736,384	-		GFF3690	0.50	-0.3
3,736,403	+		GFF3690	0.52	+1.5
3,736,417	-		GFF3690	0.54	-0.6
3,736,448	+		GFF3690	0.57	+0.3
3,736,470	-		GFF3690	0.59	-0.0
3,736,472	+		GFF3690	0.60	-1.0
3,736,472	+		GFF3690	0.60	-0.3
3,736,472	+		GFF3690	0.60	+0.9
3,736,477	+		GFF3690	0.60	+0.1
3,736,480	+		GFF3690	0.61	-1.4
3,736,480	-		GFF3690	0.61	-0.9
3,736,546	+		GFF3690	0.68	-0.5
3,736,577	+		GFF3690	0.71	+0.4
3,736,577	+		GFF3690	0.71	-0.3
3,736,577	+		GFF3690	0.71	+1.5
3,736,585	-		GFF3690	0.72	-0.7
3,736,585	-		GFF3690	0.72	+0.0
3,736,585	-		GFF3690	0.72	-0.9
3,736,614	+		GFF3690	0.75	-2.0
3,736,626	+		GFF3690	0.76	-1.3
3,736,631	-		GFF3690	0.77	+0.3
3,736,645	+		GFF3690	0.78	+0.5
3,736,647	+		GFF3690	0.78	+1.1
3,736,655	-		GFF3690	0.79	+0.3
3,736,658	+		GFF3690	0.80	-0.6
3,736,663	+		GFF3690	0.80	-0.9
3,736,683	+		GFF3690	0.82	-2.2
3,736,734	-		GFF3690	0.88	-2.9
3,736,746	+		GFF3690	0.89	+0.1
3,736,749	-		GFF3690	0.89	+0.1
3,736,751	+		GFF3690	0.90	+0.3
3,736,778	+				-0.8
3,736,782	-				+0.4
3,736,806	+				-0.8
3,736,807	+				-0.1
3,736,812	+				-0.8
3,736,812	+				-0.4
3,736,815	-				+0.3
3,736,834	-				+0.2
3,736,835	+				+0.5
3,736,835	+				-0.9
3,736,835	+				-1.3
3,736,835	+				-1.3
3,736,835	+				-1.0
3,736,843	-				-0.3
3,736,843	-				-0.0
3,736,843	-				+0.5
3,736,843	-				-0.8
3,736,843	-				-0.8
3,736,843	-				+0.1
3,736,844	-				+0.9
3,736,845	+				-1.3
3,736,845	+				+0.2
3,736,845	+				+0.2
3,736,845	+				-1.5
3,736,845	+				-1.0
3,736,853	-				-1.2
3,736,853	-				+0.5
3,736,853	-				-2.0
3,736,886	+				-1.1
3,736,886	+				-0.9
3,736,886	+				-0.5
3,736,886	+				-0.5
3,736,887	+				+0.4
3,736,894	-				-0.1
3,736,894	-				-0.0
3,736,894	-				+0.2
3,736,895	+		GFF3691	0.10	-0.3
3,736,895	+		GFF3691	0.10	-0.1
3,736,895	+		GFF3691	0.10	-1.3
3,736,903	-		GFF3691	0.12	-0.4
3,736,907	+		GFF3691	0.12	-1.7
3,736,919	+		GFF3691	0.15	-1.7
3,736,920	-		GFF3691	0.15	-1.0
3,736,927	-		GFF3691	0.16	-0.3
3,736,978	+		GFF3691	0.26	-0.9
3,736,986	-		GFF3691	0.28	-1.1
3,736,986	-		GFF3691	0.28	+1.0
3,736,993	-		GFF3691	0.29	-1.8
3,737,002	+		GFF3691	0.31	-1.0
3,737,010	+		GFF3691	0.33	+0.2
3,737,010	-		GFF3691	0.33	+0.3
3,737,010	-		GFF3691	0.33	-1.2
3,737,011	+		GFF3691	0.33	-1.0
3,737,047	+		GFF3691	0.40	-1.9
3,737,049	+		GFF3691	0.40	-0.4
3,737,057	+		GFF3691	0.42	+0.3
3,737,073	+		GFF3691	0.45	+1.2
3,737,092	+		GFF3691	0.49	-1.3
3,737,104	+		GFF3691	0.51	+0.6
3,737,112	-		GFF3691	0.53	-1.1
3,737,136	-		GFF3691	0.58	-0.2
3,737,136	-		GFF3691	0.58	-0.6
3,737,158	-		GFF3691	0.62	-1.1
3,737,165	+		GFF3691	0.63	-2.1
3,737,165	+		GFF3691	0.63	-0.0
3,737,173	-		GFF3691	0.65	-1.9
3,737,178	+		GFF3691	0.66	-1.3
3,737,182	-		GFF3691	0.67	-0.3
3,737,182	-		GFF3691	0.67	-0.1
3,737,184	+		GFF3691	0.67	-0.9
3,737,194	+		GFF3691	0.69	-0.5
3,737,218	+		GFF3691	0.74	-0.5
3,737,218	+		GFF3691	0.74	+0.0
3,737,218	+		GFF3691	0.74	+1.4
3,737,224	-		GFF3691	0.75	-0.3
3,737,224	-		GFF3691	0.75	-0.6
3,737,224	-		GFF3691	0.75	+0.1
3,737,226	-		GFF3691	0.75	-0.8
3,737,226	-		GFF3691	0.75	-1.6
3,737,226	-		GFF3691	0.75	-1.7
3,737,244	-		GFF3691	0.79	+0.6
3,737,265	+		GFF3691	0.83	-0.5
3,737,265	+		GFF3691	0.83	-0.1
3,737,298	+		GFF3691	0.90	-0.2
3,737,298	+		GFF3691	0.90	+0.1
3,737,306	-				-0.3
3,737,306	-				-2.0
3,737,329	+				-0.3
3,737,329	+				-2.8
3,737,329	+				+0.6
3,737,337	-				-0.5
3,737,337	-				-0.9
3,737,337	-				-0.3
3,737,415	-				-2.0
3,737,452	+				-0.2
3,737,509	+				+0.3
3,737,514	+				-0.4
3,737,517	-				+0.8
3,737,517	-				+2.1
3,737,522	-				-2.6
3,737,522	-				-1.0
3,737,524	+				-0.7
3,737,527	-				-1.3
3,737,532	+				-0.7
3,737,532	+				-1.2
3,737,532	+				-0.4
3,737,532	+				-2.6
3,737,532	+				+0.2
3,737,532	+				-0.4
3,737,532	+				-0.5
3,737,532	+				+0.2
3,737,532	+				-0.5
3,737,532	+				-0.3
3,737,532	+				-0.5
3,737,532	+				+0.6
3,737,532	+				-1.9
3,737,532	+				-0.4
3,737,532	+				+0.5
3,737,532	+				-1.6
3,737,532	+				-0.1
3,737,532	-				+0.2
3,737,540	-				+0.7
3,737,540	-				-0.5
3,737,540	-				-0.7
3,737,540	-				+1.1
3,737,549	+				+0.2
3,737,554	+				+0.3
3,737,557	-				+0.3
3,737,586	+				-1.0
3,737,594	-				+1.4
3,737,594	-				-0.8
3,737,608	+				-0.4
3,737,608	+				+0.4
3,737,608	+				-0.1
3,737,608	+				+0.9
3,737,608	+				-2.0
3,737,608	+				+0.1
3,737,608	+				-0.3
3,737,608	+				-0.2
3,737,608	+				-1.2
3,737,608	+				+0.6
3,737,608	+				+1.2
3,737,608	+				-0.6
3,737,616	-				+0.4
3,737,616	-				-0.7
3,737,616	-				-0.7
3,737,616	-				-2.3
3,737,616	-				+0.2
3,737,616	-				+0.1
3,737,616	-				-1.0
3,737,616	-				+0.3
3,737,616	-				+0.3
3,737,616	-				-1.3
3,737,616	-				-0.3
3,737,616	-				-2.0
3,737,616	-				-0.6
3,737,616	-				+0.3
3,737,616	-				+0.1
3,737,623	+				-0.5
3,737,623	+				-0.9
3,737,623	+				+1.2
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