Strain Fitness in Sphingobium sp. HT1-2 around GFF3641

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,686,486	+				-1.0
3,686,486	+				-2.1
3,686,494	-				+0.3
3,686,494	-				+0.1
3,686,494	-				-1.8
3,686,516	-				+0.1
3,686,530	+				-2.0
3,686,541	+				+0.2
3,686,562	+				+0.3
3,686,586	-				-0.2
3,686,596	+				+0.9
3,686,602	+				-0.6
3,686,612	+				-0.9
3,686,612	+				-0.6
3,686,614	-				-0.5
3,686,614	-				-2.8
3,686,629	-				-0.4
3,686,659	-				+1.4
3,686,659	-				+1.1
3,686,660	-				-0.2
3,686,677	-				-1.9
3,686,687	-				-0.1
3,686,694	+				-0.9
3,686,702	-				-2.1
3,686,717	-				-0.7
3,686,740	-				-0.3
3,686,741	-				+0.4
3,686,741	-				+1.0
3,686,742	-				-2.0
3,686,744	-				+0.1
3,686,752	-				-0.8
3,686,753	+				-0.6
3,686,754	+				-0.4
3,686,787	+				-0.0
3,686,787	+				-1.8
3,686,787	+				-0.7
3,686,787	+				+0.1
3,686,793	-				-0.9
3,686,795	-				-2.1
3,686,807	-				+1.0
3,686,829	-				-0.6
3,686,835	+				-1.3
3,686,856	+				+1.1
3,686,856	+				+0.1
3,686,856	+				-0.9
3,686,856	+				-0.1
3,686,856	+				-0.1
3,686,858	+				-1.4
3,686,864	+				-0.7
3,686,864	-				+0.9
3,686,864	-				-1.3
3,686,864	-				+0.5
3,686,864	-				+0.1
3,686,864	-				-0.9
3,686,864	-				+0.3
3,686,864	-				+0.4
3,686,864	-				-0.1
3,686,864	-				-2.3
3,686,864	-				-0.6
3,686,864	-				+0.6
3,686,864	-				+0.4
3,686,864	-				-2.1
3,686,864	-				-1.1
3,686,866	+				-1.6
3,686,866	+				-0.8
3,686,912	+		GFF3640	0.21	+0.4
3,686,920	-		GFF3640	0.23	+1.1
3,686,920	-		GFF3640	0.23	-2.5
3,686,958	+		GFF3640	0.33	-0.1
3,686,958	+		GFF3640	0.33	+2.1
3,686,958	+		GFF3640	0.33	-1.4
3,686,958	+		GFF3640	0.33	-0.4
3,686,958	+		GFF3640	0.33	-0.4
3,686,958	+		GFF3640	0.33	+1.2
3,686,958	+		GFF3640	0.33	-0.5
3,686,958	+		GFF3640	0.33	+0.2
3,686,958	+		GFF3640	0.33	+0.9
3,686,958	+		GFF3640	0.33	+0.5
3,686,958	+		GFF3640	0.33	-1.3
3,686,958	+		GFF3640	0.33	-0.2
3,686,958	+		GFF3640	0.33	-0.8
3,686,958	+		GFF3640	0.33	+0.2
3,686,959	+		GFF3640	0.33	-0.2
3,686,966	-		GFF3640	0.35	-2.3
3,686,966	-		GFF3640	0.35	+0.6
3,686,966	-		GFF3640	0.35	-0.4
3,686,966	-		GFF3640	0.35	-0.7
3,686,966	-		GFF3640	0.35	+0.3
3,686,966	-		GFF3640	0.35	+0.2
3,686,966	-		GFF3640	0.35	+1.0
3,686,966	-		GFF3640	0.35	-0.8
3,686,966	-		GFF3640	0.35	-1.7
3,686,966	-		GFF3640	0.35	-0.7
3,686,966	-		GFF3640	0.35	+0.1
3,686,966	-		GFF3640	0.35	+0.5
3,686,966	-		GFF3640	0.35	-1.3
3,686,966	-		GFF3640	0.35	-0.2
3,686,996	+		GFF3640	0.42	+0.1
3,686,996	+		GFF3640	0.42	+0.1
3,686,996	+		GFF3640	0.42	-0.3
3,686,999	-		GFF3640	0.43	-1.1
3,687,001	+		GFF3640	0.44	+1.7
3,687,001	+		GFF3640	0.44	+0.6
3,687,004	-		GFF3640	0.44	+0.1
3,687,004	-		GFF3640	0.44	+0.2
3,687,004	-		GFF3640	0.44	-0.3
3,687,009	-		GFF3640	0.46	-0.2
3,687,009	-		GFF3640	0.46	-1.9
3,687,015	+		GFF3640	0.47	-1.0
3,687,024	-		GFF3640	0.49	+0.2
3,687,030	+		GFF3640	0.51	+0.4
3,687,030	+		GFF3640	0.51	-2.7
3,687,036	+		GFF3640	0.53	-1.7
3,687,036	+		GFF3640	0.53	-0.2
3,687,036	+		GFF3640	0.53	+0.6
3,687,036	+		GFF3640	0.53	+0.4
3,687,036	+		GFF3640	0.53	-1.8
3,687,036	+		GFF3640	0.53	-0.8
3,687,038	+		GFF3640	0.53	+1.0
3,687,038	-		GFF3640	0.53	+0.5
3,687,038	-		GFF3640	0.53	+1.0
3,687,038	-		GFF3640	0.53	-0.7
3,687,039	-		GFF3640	0.53	-0.5
3,687,044	-		GFF3640	0.55	-0.1
3,687,044	-		GFF3640	0.55	-0.7
3,687,044	-		GFF3640	0.55	-1.0
3,687,044	-		GFF3640	0.55	-0.4
3,687,046	+		GFF3640	0.55	+0.2
3,687,046	+		GFF3640	0.55	-1.4
3,687,046	+		GFF3640	0.55	-1.4
3,687,046	+		GFF3640	0.55	-0.4
3,687,054	-		GFF3640	0.57	+0.2
3,687,054	-		GFF3640	0.57	-1.6
3,687,054	-		GFF3640	0.57	-0.5
3,687,054	-		GFF3640	0.57	-1.4
3,687,072	+		GFF3640	0.62	+0.5
3,687,077	+		GFF3640	0.63	-1.2
3,687,078	+		GFF3640	0.63	+1.4
3,687,080	-		GFF3640	0.64	-0.3
3,687,085	-		GFF3640	0.65	+1.0
3,687,089	-		GFF3640	0.66	+0.8
3,687,099	+		GFF3640	0.68	-0.1
3,687,099	+		GFF3640	0.68	+0.6
3,687,118	+		GFF3640	0.73	-0.2
3,687,185	+				+0.1
3,687,193	-				-1.5
3,687,193	-				-2.3
3,687,193	-				-2.6
3,687,195	+				+0.5
3,687,418	+				-0.7
3,687,461	+				-0.3
3,687,463	+				-0.6
3,687,463	+				-0.2
3,687,471	-				+1.3
3,687,494	+				+0.4
3,687,626	-		GFF3641	0.49	+0.8
3,687,630	+		GFF3641	0.50	-0.8
3,687,686	-		GFF3641	0.69	+0.2
3,687,738	-		GFF3641	0.85	+1.1
3,687,748	+		GFF3641	0.89	+0.7
3,687,748	+		GFF3641	0.89	-0.4
3,687,748	+		GFF3641	0.89	-0.6
3,687,748	+		GFF3641	0.89	-0.7
3,687,756	-				+0.7
3,687,756	-				+0.3
3,687,756	-				-0.1
3,687,756	-				-1.1
3,687,758	+				-0.3
3,687,766	-				+0.1
3,687,823	-				+0.5
3,687,823	-				-0.4
3,687,833	-				-0.1
3,687,845	+				-0.3
3,687,845	+				-0.1
3,687,846	+				-0.9
3,687,846	+				+0.8
3,687,846	+				+0.9
3,687,846	-				-0.0
3,687,854	-				+1.1
3,687,854	-				-1.8
3,687,854	-				-2.2
3,687,854	-				+0.7
3,687,854	-				+0.4
3,687,857	+				-1.3
3,687,857	+				-1.5
3,687,857	+				-0.3
3,687,859	-				+0.0
3,687,862	+				+0.3
3,687,865	-				-0.4
3,687,867	+				+1.2
3,687,867	+				+1.2
3,687,877	-				-0.4
3,687,940	-				+0.9
3,687,940	-				+0.9
3,687,940	-				-1.3
3,687,940	-				-0.0
3,687,940	-				-0.5
3,687,940	-				+1.4
3,687,940	-				+0.4
3,687,940	-				-0.1
3,687,940	-				+1.2
3,688,088	+		GFF3642	0.27	-0.7
3,688,088	+		GFF3642	0.27	-0.8
3,688,098	+		GFF3642	0.30	-0.9
3,688,114	+		GFF3642	0.35	-1.8
3,688,116	+		GFF3642	0.35	-0.0
3,688,116	+		GFF3642	0.35	+1.4
3,688,116	+		GFF3642	0.35	-0.2
3,688,116	+		GFF3642	0.35	-1.7
3,688,121	+		GFF3642	0.37	+1.0
3,688,121	+		GFF3642	0.37	+0.3
3,688,121	+		GFF3642	0.37	-0.6
3,688,121	+		GFF3642	0.37	+0.5
3,688,121	+		GFF3642	0.37	+0.3
3,688,121	+		GFF3642	0.37	-0.3
3,688,121	+		GFF3642	0.37	-0.8
3,688,122	-		GFF3642	0.37	-2.0
3,688,122	-		GFF3642	0.37	-1.6
3,688,124	-		GFF3642	0.38	-0.8
3,688,126	+		GFF3642	0.38	+1.0
3,688,126	+		GFF3642	0.38	-0.7
3,688,126	+		GFF3642	0.38	-0.4
3,688,126	+		GFF3642	0.38	-1.1
3,688,126	+		GFF3642	0.38	-0.9
3,688,129	-		GFF3642	0.39	-0.4
3,688,129	-		GFF3642	0.39	-0.8
3,688,129	-		GFF3642	0.39	+1.9
3,688,129	-		GFF3642	0.39	+0.4
3,688,129	-		GFF3642	0.39	-0.2
3,688,129	-		GFF3642	0.39	+0.5
3,688,129	-		GFF3642	0.39	+0.5
3,688,129	-		GFF3642	0.39	+1.0
3,688,129	-		GFF3642	0.39	-0.6
3,688,131	+		GFF3642	0.40	+1.0
3,688,134	-		GFF3642	0.40	+0.2
3,688,140	+		GFF3642	0.42	-1.4
3,688,142	+		GFF3642	0.43	-1.1
3,688,148	+		GFF3642	0.44	-1.2
3,688,148	+		GFF3642	0.44	+0.1
3,688,149	+		GFF3642	0.45	-1.3
3,688,149	+		GFF3642	0.45	+0.2
3,688,150	+		GFF3642	0.45	+0.3
3,688,150	+		GFF3642	0.45	+1.0
3,688,150	-		GFF3642	0.45	+0.7
3,688,150	-		GFF3642	0.45	-0.1
3,688,157	-		GFF3642	0.47	+0.2
3,688,157	-		GFF3642	0.47	-0.0
3,688,157	-		GFF3642	0.47	-0.3
3,688,157	-		GFF3642	0.47	-0.6
3,688,158	-		GFF3642	0.47	+1.1
3,688,158	-		GFF3642	0.47	-0.9
3,688,158	-		GFF3642	0.47	-1.6
3,688,159	+		GFF3642	0.48	-1.7
3,688,167	-		GFF3642	0.50	-1.2
3,688,167	-		GFF3642	0.50	+0.4
3,688,167	-		GFF3642	0.50	-1.3
3,688,168	+		GFF3642	0.50	-0.2
3,688,168	-		GFF3642	0.50	+0.1
3,688,169	+		GFF3642	0.50	-0.4
3,688,169	+		GFF3642	0.50	+0.1
3,688,169	+		GFF3642	0.50	-0.7
3,688,169	+		GFF3642	0.50	+1.4
3,688,171	+		GFF3642	0.51	-0.7
3,688,171	+		GFF3642	0.51	+0.7
3,688,171	+		GFF3642	0.51	-0.5
3,688,171	+		GFF3642	0.51	-1.3
3,688,171	+		GFF3642	0.51	-2.0
3,688,174	-		GFF3642	0.52	-1.5
3,688,177	-		GFF3642	0.53	-0.2
3,688,177	-		GFF3642	0.53	-1.6
3,688,179	-		GFF3642	0.53	+0.1
3,688,179	-		GFF3642	0.53	+0.9
3,688,179	-		GFF3642	0.53	+0.9
3,688,179	-		GFF3642	0.53	-1.1
3,688,179	-		GFF3642	0.53	-0.3
3,688,179	-		GFF3642	0.53	+0.2
3,688,179	-		GFF3642	0.53	+0.2
3,688,202	+		GFF3642	0.60	-0.3
3,688,202	+		GFF3642	0.60	+1.1
3,688,210	-		GFF3642	0.62	+0.0
3,688,210	-		GFF3642	0.62	-0.7
3,688,211	-		GFF3642	0.62	-0.2
3,688,226	+		GFF3642	0.67	-0.4
3,688,227	+		GFF3642	0.67	+0.0
3,688,227	+		GFF3642	0.67	+0.2
3,688,227	+		GFF3642	0.67	-1.4
3,688,227	-		GFF3642	0.67	-0.2
3,688,233	-		GFF3642	0.69	-0.7
3,688,235	-		GFF3642	0.69	-1.0
3,688,244	-		GFF3642	0.72	-1.1
3,688,245	+		GFF3642	0.72	-1.0
3,688,245	-		GFF3642	0.72	-0.5
3,688,246	-		GFF3642	0.72	+0.8
3,688,265	-		GFF3642	0.78	+1.1
3,688,270	-		GFF3642	0.79	+0.5
3,688,270	-		GFF3642	0.79	-0.6
3,688,270	-		GFF3642	0.79	-2.0
3,688,277	+		GFF3642	0.81	-0.6
3,688,281	+		GFF3642	0.82	+0.1
3,688,289	-		GFF3642	0.85	-0.6
3,688,289	-		GFF3642	0.85	-1.1
3,688,294	+		GFF3642	0.86	+0.2
3,688,301	+		GFF3642	0.88	-0.3
3,688,301	+		GFF3642	0.88	-0.3
3,688,301	+		GFF3642	0.88	+0.5
3,688,301	+		GFF3642	0.88	+0.1
3,688,301	+		GFF3642	0.88	-0.9
3,688,301	+		GFF3642	0.88	+1.4
3,688,301	+		GFF3642	0.88	+1.3
3,688,301	+		GFF3642	0.88	+0.8
3,688,301	+		GFF3642	0.88	+0.4
3,688,301	+		GFF3642	0.88	+1.3
3,688,302	-		GFF3642	0.88	+1.7
3,688,302	-		GFF3642	0.88	-1.2
3,688,302	-		GFF3642	0.88	+0.2
3,688,309	-				-0.6
3,688,309	-				-0.4
3,688,309	-				-1.0
3,688,309	-				-0.5
3,688,309	-				-0.7
3,688,309	-				-0.1
3,688,309	-				-0.2
3,688,309	-				-1.4
3,688,335	-				+0.8
3,688,367	+				-1.1
3,688,368	+				+0.1
3,688,374	+				+0.6
3,688,374	+				-0.6
3,688,374	+				+0.3
3,688,374	+				-0.1
3,688,382	-				-1.3
3,688,382	-				-1.1
3,688,382	-				+0.3
3,688,382	-				-1.0
3,688,382	-				-0.1
3,688,382	-				-0.4
3,688,399	+				-0.4
3,688,416	+		GFF3643	0.14	-1.4
3,688,419	+		GFF3643	0.14	+0.6
3,688,419	-		GFF3643	0.14	-0.3
3,688,424	+		GFF3643	0.16	+0.0
3,688,424	+		GFF3643	0.16	+0.3
3,688,424	-		GFF3643	0.16	+0.4
3,688,429	+		GFF3643	0.17	-0.1
3,688,429	+		GFF3643	0.17	-1.1
3,688,429	+		GFF3643	0.17	-0.3
3,688,429	+		GFF3643	0.17	+0.8
3,688,429	+		GFF3643	0.17	-1.1
3,688,429	+		GFF3643	0.17	+0.1
3,688,429	+		GFF3643	0.17	-1.6
3,688,429	+		GFF3643	0.17	-0.4
3,688,429	+		GFF3643	0.17	+0.1
3,688,432	-		GFF3643	0.18	-1.0
3,688,432	-		GFF3643	0.18	-0.1
3,688,434	+		GFF3643	0.18	+0.3
3,688,435	-		GFF3643	0.18	-1.2
3,688,437	-		GFF3643	0.19	+1.3
3,688,437	-		GFF3643	0.19	+0.7
3,688,437	-		GFF3643	0.19	-1.4
3,688,467	-		GFF3643	0.27	+0.7
3,688,471	+		GFF3643	0.28	+0.1
3,688,476	+		GFF3643	0.29	+1.1
3,688,476	+		GFF3643	0.29	-0.4
3,688,476	+		GFF3643	0.29	-1.0
3,688,476	+		GFF3643	0.29	+0.5
3,688,476	+		GFF3643	0.29	+1.6
3,688,476	+		GFF3643	0.29	+0.0
3,688,476	+		GFF3643	0.29	+0.7
3,688,476	+		GFF3643	0.29	-0.7
3,688,476	+		GFF3643	0.29	+0.4
3,688,479	-		GFF3643	0.30	-0.4
3,688,483	+		GFF3643	0.31	+0.3
3,688,483	+		GFF3643	0.31	-2.3
3,688,483	+		GFF3643	0.31	+0.4
3,688,484	-		GFF3643	0.31	+0.2
3,688,484	-		GFF3643	0.31	-1.3
3,688,484	-		GFF3643	0.31	-1.3
3,688,484	-		GFF3643	0.31	+0.9
3,688,484	-		GFF3643	0.31	-1.5
3,688,484	-		GFF3643	0.31	+0.6
3,688,484	-		GFF3643	0.31	+1.3
3,688,491	-		GFF3643	0.33	+0.6
3,688,509	-		GFF3643	0.37	-0.5
3,688,523	+		GFF3643	0.41	+0.4
3,688,523	+		GFF3643	0.41	-1.1
3,688,523	+		GFF3643	0.41	-0.3
3,688,532	-		GFF3643	0.43	+0.8
3,688,532	-		GFF3643	0.43	-0.7
3,688,542	+		GFF3643	0.46	-0.9
3,688,542	+		GFF3643	0.46	-1.5
3,688,548	+		GFF3643	0.47	-0.1
3,688,548	+		GFF3643	0.47	-0.5
3,688,548	+		GFF3643	0.47	-0.3
3,688,550	+		GFF3643	0.48	-1.2
3,688,556	-		GFF3643	0.49	-0.3
3,688,558	-		GFF3643	0.50	+0.3
3,688,560	+		GFF3643	0.51	-1.1
3,688,560	-		GFF3643	0.51	-1.1
3,688,567	-		GFF3643	0.52	-2.7
3,688,567	-		GFF3643	0.52	-0.3
3,688,579	+		GFF3643	0.55	+0.2
3,688,579	+		GFF3643	0.55	-0.8
3,688,584	+		GFF3643	0.57	-0.0
3,688,587	-		GFF3643	0.57	-0.4
3,688,592	-		GFF3643	0.59	-1.2
3,688,592	-		GFF3643	0.59	+1.4
3,688,618	-		GFF3643	0.65	-0.3
3,688,660	-		GFF3643	0.76	+0.9
3,688,672	-		GFF3643	0.79	+0.8
3,688,679	-		GFF3643	0.81	-0.1
3,688,689	-		GFF3643	0.84	-0.3
3,688,691	-		GFF3643	0.84	-0.7
3,688,755	+				+0.0
3,688,760	+				+0.9
3,688,760	+				-0.6
3,688,760	+				-1.7
3,688,760	+				-2.1
3,688,760	+				-0.0
3,688,760	+				+0.6
3,688,760	+				+0.9
3,688,760	+				-0.0
3,688,760	+				-0.4
3,688,767	+				-1.6
3,688,774	+				+1.3
3,688,775	-				-1.6
3,688,782	-				-0.3
3,688,782	-				-1.0
3,688,782	-				-2.2