Strain Fitness in Sphingobium sp. HT1-2 around GFF3627

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,674,839	+		GFF3625	0.89	-1.5
3,674,857	-				-0.2
3,674,887	-				-1.1
3,675,017	+				+0.2
3,675,034	+				-0.6
3,675,034	+				+0.2
3,675,042	-				+1.6
3,675,042	-				-0.6
3,675,052	+				-0.6
3,675,052	+				+1.1
3,675,052	+				-2.0
3,675,052	+				-1.0
3,675,052	+				-0.1
3,675,052	+				-0.2
3,675,060	-				+1.1
3,675,060	-				-0.4
3,675,060	-				+0.3
3,675,069	-				-0.7
3,675,117	-		GFF3626	0.14	+1.1
3,675,137	+		GFF3626	0.17	+0.6
3,675,147	+		GFF3626	0.18	+0.8
3,675,152	+		GFF3626	0.19	-0.0
3,675,169	+		GFF3626	0.21	+0.0
3,675,196	-		GFF3626	0.24	+0.1
3,675,323	+		GFF3626	0.40	-0.3
3,675,323	+		GFF3626	0.40	+0.5
3,675,331	-		GFF3626	0.41	+1.1
3,675,331	-		GFF3626	0.41	-0.0
3,675,331	-		GFF3626	0.41	-1.7
3,675,333	-		GFF3626	0.42	-0.3
3,675,371	+		GFF3626	0.46	-2.8
3,675,377	+		GFF3626	0.47	-1.9
3,675,392	+		GFF3626	0.49	+1.2
3,675,400	-		GFF3626	0.50	-0.0
3,675,415	+		GFF3626	0.52	+0.3
3,675,436	-		GFF3626	0.55	+0.5
3,675,482	-		GFF3626	0.60	-0.5
3,675,484	+		GFF3626	0.61	+0.7
3,675,522	-		GFF3626	0.66	+0.0
3,675,533	+		GFF3626	0.67	-3.0
3,675,559	+		GFF3626	0.70	+0.4
3,675,565	+		GFF3626	0.71	+1.6
3,675,565	+		GFF3626	0.71	+0.1
3,675,565	+		GFF3626	0.71	-1.4
3,675,565	+		GFF3626	0.71	-0.8
3,675,565	+		GFF3626	0.71	-0.1
3,675,565	+		GFF3626	0.71	+0.6
3,675,573	-		GFF3626	0.72	+0.5
3,675,573	-		GFF3626	0.72	+0.8
3,675,573	-		GFF3626	0.72	-1.5
3,675,573	-		GFF3626	0.72	-0.7
3,675,573	-		GFF3626	0.72	-0.2
3,675,573	-		GFF3626	0.72	+1.1
3,675,573	-		GFF3626	0.72	-0.8
3,675,573	-		GFF3626	0.72	-0.3
3,675,573	-		GFF3626	0.72	-0.3
3,675,575	+		GFF3626	0.72	+0.1
3,675,591	-		GFF3626	0.74	-1.1
3,675,608	-		GFF3626	0.76	+1.4
3,675,608	-		GFF3626	0.76	-0.2
3,675,682	-		GFF3626	0.86	-1.3
3,675,732	-				-0.9
3,675,775	+				-1.7
3,675,775	+				-0.4
3,675,775	+				+0.2
3,675,783	-				+0.6
3,675,794	+				+0.1
3,675,851	-				-0.9
3,675,863	+				+0.5
3,675,863	+				+1.2
3,675,863	+				+0.9
3,675,863	+				-0.4
3,675,863	+				-1.1
3,675,871	-				-0.6
3,675,876	-				-1.0
3,675,887	+				-1.3
3,675,901	+				-1.3
3,675,901	+				-0.3
3,675,901	+				-1.3
3,675,901	+				+0.2
3,675,909	-		GFF3627	0.10	-1.5
3,675,916	+		GFF3627	0.11	-1.6
3,675,998	+		GFF3627	0.19	-0.2
3,675,998	+		GFF3627	0.19	-1.2
3,676,013	+		GFF3627	0.21	+0.8
3,676,018	+		GFF3627	0.22	+0.1
3,676,018	+		GFF3627	0.22	+0.2
3,676,018	+		GFF3627	0.22	+0.6
3,676,026	-		GFF3627	0.22	-1.5
3,676,026	-		GFF3627	0.22	-1.8
3,676,031	-		GFF3627	0.23	-1.2
3,676,031	-		GFF3627	0.23	+0.9
3,676,031	-		GFF3627	0.23	+0.7
3,676,040	+		GFF3627	0.24	-1.3
3,676,076	-		GFF3627	0.28	-0.4
3,676,144	-		GFF3627	0.35	-0.9
3,676,190	+		GFF3627	0.40	-0.4
3,676,190	+		GFF3627	0.40	-1.1
3,676,198	-		GFF3627	0.40	+1.1
3,676,207	+		GFF3627	0.41	+1.2
3,676,232	+		GFF3627	0.44	-2.3
3,676,240	-		GFF3627	0.45	+0.5
3,676,242	+		GFF3627	0.45	-0.8
3,676,242	+		GFF3627	0.45	+0.9
3,676,250	-		GFF3627	0.46	+1.0
3,676,266	+		GFF3627	0.48	-0.6
3,676,272	+		GFF3627	0.48	+0.1
3,676,273	+		GFF3627	0.48	-1.7
3,676,280	-		GFF3627	0.49	-0.3
3,676,280	-		GFF3627	0.49	+0.5
3,676,280	-		GFF3627	0.49	+0.5
3,676,280	-		GFF3627	0.49	+0.0
3,676,311	+		GFF3627	0.52	+0.8
3,676,311	+		GFF3627	0.52	+1.1
3,676,311	+		GFF3627	0.52	+0.1
3,676,311	+		GFF3627	0.52	+1.6
3,676,324	+		GFF3627	0.54	+0.5
3,676,324	+		GFF3627	0.54	-1.4
3,676,324	+		GFF3627	0.54	-2.5
3,676,375	-		GFF3627	0.59	-0.0
3,676,375	-		GFF3627	0.59	-0.8
3,676,381	-		GFF3627	0.60	+1.2
3,676,381	-		GFF3627	0.60	+0.7
3,676,381	-		GFF3627	0.60	-1.2
3,676,391	-		GFF3627	0.61	-0.1
3,676,395	-		GFF3627	0.61	+0.7
3,676,501	-		GFF3627	0.72	-0.4
3,676,501	-		GFF3627	0.72	+1.6
3,676,524	-		GFF3627	0.75	+0.7
3,676,524	-		GFF3627	0.75	-0.2
3,676,524	-		GFF3627	0.75	+0.7
3,676,525	-		GFF3627	0.75	+0.8
3,676,535	+		GFF3627	0.76	+0.6
3,676,588	-		GFF3627	0.81	-0.1
3,676,632	+		GFF3627	0.86	-0.0
3,676,632	+		GFF3627	0.86	+1.4
3,676,639	+		GFF3627	0.87	+2.4
3,676,640	-		GFF3627	0.87	+0.9
3,676,645	-		GFF3627	0.87	+0.1
3,676,668	+		GFF3627	0.90	-0.8
3,676,683	+				+0.4
3,676,706	+				+0.8
3,676,727	-				-0.6
3,676,791	-				-0.1
3,676,791	-				-1.2
3,676,797	-				+2.9
3,676,808	+				-1.4
3,676,878	+		GFF3628	0.10	+1.3
3,676,902	-		GFF3628	0.12	+0.7
3,676,934	+		GFF3628	0.15	+0.5
3,676,940	-		GFF3628	0.16	-0.5
3,676,940	-		GFF3628	0.16	-1.3
3,676,940	-		GFF3628	0.16	-0.5
3,676,940	-		GFF3628	0.16	-0.3
3,676,942	+		GFF3628	0.16	-0.1
3,676,942	+		GFF3628	0.16	-0.4
3,676,942	-		GFF3628	0.16	-0.8
3,676,950	-		GFF3628	0.17	-1.9
3,676,985	-		GFF3628	0.20	+0.1
3,676,985	-		GFF3628	0.20	-0.2
3,676,990	-		GFF3628	0.20	-1.3
3,676,998	+		GFF3628	0.21	-0.6
3,677,042	+		GFF3628	0.25	+1.0
3,677,077	+		GFF3628	0.28	-0.1
3,677,081	+		GFF3628	0.29	-0.3
3,677,147	-		GFF3628	0.35	-0.1
3,677,234	+		GFF3628	0.43	-0.6
3,677,234	+		GFF3628	0.43	+0.5
3,677,239	+		GFF3628	0.43	+0.5
3,677,239	+		GFF3628	0.43	+0.6
3,677,244	+		GFF3628	0.44	+1.0
3,677,244	+		GFF3628	0.44	-0.4
3,677,244	+		GFF3628	0.44	-0.7
3,677,244	+		GFF3628	0.44	+0.9
3,677,247	-		GFF3628	0.44	-0.7
3,677,248	-		GFF3628	0.44	+0.3
3,677,252	-		GFF3628	0.45	+0.1
3,677,252	-		GFF3628	0.45	+0.9
3,677,252	-		GFF3628	0.45	+0.1
3,677,286	-		GFF3628	0.48	-0.3
3,677,373	+		GFF3628	0.56	+0.6
3,677,392	+		GFF3628	0.57	+0.4
3,677,420	-		GFF3628	0.60	-0.9
3,677,477	+		GFF3628	0.65	+0.1
3,677,479	+		GFF3628	0.65	+0.1
3,677,479	+		GFF3628	0.65	-1.1
3,677,487	-		GFF3628	0.66	+1.3
3,677,488	+		GFF3628	0.66	-0.8
3,677,514	+		GFF3628	0.69	-0.6
3,677,538	+		GFF3628	0.71	+2.1
3,677,543	-		GFF3628	0.71	+0.2
3,677,560	+		GFF3628	0.73	-1.5
3,677,570	+		GFF3628	0.74	+1.3
3,677,578	+		GFF3628	0.74	+0.4