Strain Fitness in Sphingobium sp. HT1-2 around GFF3616

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,663,774	+		GFF3615	0.60	-0.2
3,663,775	-		GFF3615	0.60	-1.0
3,663,777	-		GFF3615	0.60	-1.3
3,663,777	-		GFF3615	0.60	-0.1
3,663,777	-		GFF3615	0.60	-0.2
3,663,795	-		GFF3615	0.61	+0.5
3,663,800	-		GFF3615	0.61	-1.0
3,663,801	+		GFF3615	0.61	-0.7
3,663,811	+		GFF3615	0.61	-0.5
3,663,814	-		GFF3615	0.61	-2.0
3,663,818	+		GFF3615	0.62	+1.1
3,663,819	-		GFF3615	0.62	-0.9
3,663,840	+		GFF3615	0.63	-1.7
3,663,840	+		GFF3615	0.63	+0.1
3,663,844	+		GFF3615	0.63	-2.4
3,663,847	-		GFF3615	0.63	-1.5
3,663,847	-		GFF3615	0.63	+1.2
3,663,848	-		GFF3615	0.63	-0.6
3,663,849	+		GFF3615	0.63	-0.4
3,663,849	+		GFF3615	0.63	-1.2
3,663,849	+		GFF3615	0.63	-1.2
3,663,857	-		GFF3615	0.63	+1.3
3,663,857	-		GFF3615	0.63	-1.3
3,663,857	-		GFF3615	0.63	-0.6
3,663,864	-		GFF3615	0.64	+1.2
3,663,878	-		GFF3615	0.64	+0.1
3,663,894	-		GFF3615	0.65	-0.9
3,663,896	+		GFF3615	0.65	+0.0
3,663,897	-		GFF3615	0.65	-0.8
3,663,943	-		GFF3615	0.68	+0.8
3,663,995	+		GFF3615	0.70	+0.3
3,664,018	-		GFF3615	0.71	-2.4
3,664,041	+		GFF3615	0.72	+1.3
3,664,041	+		GFF3615	0.72	-0.4
3,664,043	+		GFF3615	0.72	-1.3
3,664,046	+		GFF3615	0.72	+0.8
3,664,046	+		GFF3615	0.72	+0.1
3,664,049	-		GFF3615	0.73	+0.9
3,664,068	-		GFF3615	0.73	+0.3
3,664,075	+		GFF3615	0.74	+1.2
3,664,083	-		GFF3615	0.74	+0.1
3,664,085	+		GFF3615	0.74	-2.1
3,664,085	+		GFF3615	0.74	+0.4
3,664,085	+		GFF3615	0.74	+0.2
3,664,085	+		GFF3615	0.74	-0.1
3,664,093	+		GFF3615	0.75	-0.0
3,664,093	-		GFF3615	0.75	+0.9
3,664,093	-		GFF3615	0.75	-1.5
3,664,093	-		GFF3615	0.75	+1.2
3,664,093	-		GFF3615	0.75	-1.5
3,664,093	-		GFF3615	0.75	+0.2
3,664,093	-		GFF3615	0.75	-1.5
3,664,101	-		GFF3615	0.75	-0.3
3,664,158	-		GFF3615	0.78	-0.6
3,664,229	+		GFF3615	0.81	+0.5
3,664,232	+		GFF3615	0.81	-1.1
3,664,245	-		GFF3615	0.82	-1.2
3,664,249	+		GFF3615	0.82	-0.6
3,664,250	+		GFF3615	0.82	+0.5
3,664,256	-		GFF3615	0.82	-0.6
3,664,257	-		GFF3615	0.82	+0.7
3,664,257	-		GFF3615	0.82	+0.8
3,664,257	-		GFF3615	0.82	+0.3
3,664,268	-		GFF3615	0.83	-0.2
3,664,287	+		GFF3615	0.84	+0.7
3,664,287	+		GFF3615	0.84	+0.6
3,664,290	-		GFF3615	0.84	-0.6
3,664,292	+		GFF3615	0.84	+0.2
3,664,295	-		GFF3615	0.84	+1.8
3,664,300	-		GFF3615	0.84	-2.3
3,664,302	-		GFF3615	0.84	+0.5
3,664,343	-		GFF3615	0.86	-0.3
3,664,358	+		GFF3615	0.87	+2.1
3,664,358	+		GFF3615	0.87	-0.9
3,664,382	+		GFF3615	0.88	-0.7
3,664,408	+		GFF3615	0.89	-0.6
3,664,485	-				+0.7
3,664,485	-				-0.7
3,664,492	+				+0.8
3,664,493	-				+1.3
3,664,500	-				-0.4
3,664,512	-				+0.3
3,664,514	+				-0.5
3,664,533	-				-1.0
3,664,557	+				-1.0
3,664,562	+				-2.3
3,664,565	-				+0.4
3,664,581	+				+0.4
3,664,581	+				-0.4
3,664,589	-				-0.1
3,664,589	-				-0.5
3,664,589	-				+0.7
3,664,589	-				-1.9
3,664,607	+				-2.0
3,664,612	+				-0.1
3,664,612	+				-0.3
3,664,612	-				-0.7
3,664,626	+				-1.0
3,664,626	+				-1.7
3,664,629	-				+0.4
3,664,634	+				+0.5
3,664,639	+				-0.7
3,664,644	+				-0.2
3,664,648	+				+1.5
3,664,653	+				+0.1
3,664,653	+				-1.2
3,664,653	+				-0.3
3,664,653	+				+1.1
3,664,653	+				+0.2
3,664,658	+				+0.4
3,664,661	-				-1.6
3,664,661	-				-2.3
3,664,664	+				-1.4
3,664,669	+				-0.7
3,664,677	-				-0.1
3,664,699	+				+0.2
3,664,699	+				-0.1
3,664,699	+				+0.8
3,664,699	-				-2.8
3,664,707	-				-1.3
3,664,710	-				-3.0
3,664,714	+				-0.5
3,664,715	+				-0.7
3,664,722	-				-1.9
3,664,726	-				-0.1
3,664,746	-				-0.6
3,664,788	+		GFF3616	0.13	-0.6
3,664,788	+		GFF3616	0.13	-1.6
3,664,788	+		GFF3616	0.13	-1.3
3,664,788	+		GFF3616	0.13	-1.3
3,664,788	+		GFF3616	0.13	+0.1
3,664,796	-		GFF3616	0.18	-0.0
3,664,796	-		GFF3616	0.18	+0.2
3,664,796	-		GFF3616	0.18	-0.3
3,664,798	+		GFF3616	0.20	+0.5
3,664,798	+		GFF3616	0.20	+0.2
3,664,798	+		GFF3616	0.20	-0.1
3,664,798	+		GFF3616	0.20	-0.3
3,664,798	+		GFF3616	0.20	+1.1
3,664,798	+		GFF3616	0.20	-0.3
3,664,798	+		GFF3616	0.20	+0.2
3,664,798	+		GFF3616	0.20	-0.3
3,664,798	+		GFF3616	0.20	+0.3
3,664,798	+		GFF3616	0.20	-1.4
3,664,798	+		GFF3616	0.20	-1.6
3,664,798	+		GFF3616	0.20	+1.5
3,664,798	+		GFF3616	0.20	+0.3
3,664,803	+		GFF3616	0.23	-2.1
3,664,803	+		GFF3616	0.23	-0.6
3,664,806	-		GFF3616	0.26	-0.5
3,664,806	-		GFF3616	0.26	-0.7
3,664,806	-		GFF3616	0.26	+0.3
3,664,806	-		GFF3616	0.26	-0.7
3,664,806	-		GFF3616	0.26	-2.0
3,664,806	-		GFF3616	0.26	+1.1
3,664,806	-		GFF3616	0.26	+0.6
3,664,811	-		GFF3616	0.29	-1.8
3,664,820	-		GFF3616	0.35	-0.4
3,664,830	+		GFF3616	0.43	-2.4
3,664,842	+		GFF3616	0.51	-1.9
3,664,847	+		GFF3616	0.55	+0.5
3,664,847	+		GFF3616	0.55	+0.5
3,664,847	+		GFF3616	0.55	-0.9
3,664,852	+		GFF3616	0.58	-1.7
3,664,854	+		GFF3616	0.60	-1.4
3,664,855	-		GFF3616	0.60	-1.0
3,664,860	-		GFF3616	0.64	-0.9
3,664,862	-		GFF3616	0.65	+1.0
3,664,914	+				-1.1
3,664,942	-				+1.1
3,665,029	+				-0.1
3,665,037	-				-1.3
3,665,037	-				-1.0
3,665,037	-				+0.1
3,665,043	-				-1.9
3,665,049	+				-0.1
3,665,049	-				+0.5
3,665,057	-				+0.7
3,665,061	+				+0.5
3,665,070	-				-0.7
3,665,072	+				-0.6
3,665,072	-				-0.7
3,665,072	-				+0.2
3,665,092	-				+0.2
3,665,092	-				-2.0
3,665,092	-				-0.7
3,665,094	+				+0.9
3,665,094	+				+0.5
3,665,095	-				+0.3
3,665,097	+				+0.4
3,665,098	-				-0.8
3,665,102	-				-1.2
3,665,102	-				+1.5
3,665,102	-				-2.6
3,665,102	-				+0.4
3,665,105	-				-1.4
3,665,139	+				-1.5
3,665,154	-				-1.3
3,665,158	-				-2.0
3,665,163	+				-0.0
3,665,163	+				-1.3
3,665,163	+				-0.5
3,665,163	+				+1.5
3,665,163	+				+0.2
3,665,163	+				+1.3
3,665,163	+				-0.5
3,665,163	+				-0.4
3,665,163	+				-0.3
3,665,163	+				-0.5
3,665,163	-				-1.4
3,665,166	-				+0.9
3,665,166	-				+0.4
3,665,168	+				+0.1
3,665,171	-				-0.8
3,665,171	-				+0.9
3,665,171	-				+1.3
3,665,193	-				-1.3
3,665,196	+				+0.3
3,665,203	+				-0.4
3,665,204	-				+0.8
3,665,243	-				+0.5
3,665,258	+				+0.7
3,665,258	+				+0.3
3,665,258	+				-0.8
3,665,258	+				-0.2
3,665,266	-				+0.9
3,665,266	-				-0.6
3,665,266	-				-1.7
3,665,266	-				-0.2
3,665,266	-				-0.3
3,665,270	+				-2.0
3,665,270	+				+0.3
3,665,270	+				-1.3
3,665,270	+				-0.0
3,665,271	-				+0.8
3,665,285	+		GFF3617	0.10	-1.0
3,665,285	+		GFF3617	0.10	-0.9
3,665,285	+		GFF3617	0.10	+0.2
3,665,289	-		GFF3617	0.10	+0.1
3,665,293	-		GFF3617	0.11	-0.7
3,665,293	-		GFF3617	0.11	-1.2
3,665,293	-		GFF3617	0.11	-1.6
3,665,309	+		GFF3617	0.12	-0.4
3,665,309	+		GFF3617	0.12	+0.4
3,665,319	+		GFF3617	0.12	-0.6
3,665,327	-		GFF3617	0.13	-0.0
3,665,330	-		GFF3617	0.13	+0.5
3,665,336	-		GFF3617	0.13	-0.3
3,665,351	-		GFF3617	0.14	-1.5
3,665,351	-		GFF3617	0.14	+0.6
3,665,353	-		GFF3617	0.15	-1.3
3,665,396	+		GFF3617	0.17	-1.5
3,665,404	-		GFF3617	0.18	+0.2
3,665,404	-		GFF3617	0.18	+1.9
3,665,404	-		GFF3617	0.18	-0.1
3,665,418	+		GFF3617	0.19	+0.0
3,665,420	+		GFF3617	0.19	+0.6
3,665,428	-		GFF3617	0.19	-1.7
3,665,430	+		GFF3617	0.19	-0.5
3,665,443	+		GFF3617	0.20	+0.9
3,665,461	+		GFF3617	0.21	+0.1
3,665,461	+		GFF3617	0.21	-0.9
3,665,461	+		GFF3617	0.21	+0.6
3,665,461	+		GFF3617	0.21	-0.3
3,665,461	+		GFF3617	0.21	-0.4
3,665,461	+		GFF3617	0.21	+0.8
3,665,461	+		GFF3617	0.21	-0.3
3,665,461	+		GFF3617	0.21	+0.7
3,665,461	+		GFF3617	0.21	+0.2
3,665,461	+		GFF3617	0.21	+0.5
3,665,461	+		GFF3617	0.21	-0.1
3,665,469	-		GFF3617	0.22	-0.1
3,665,469	-		GFF3617	0.22	+0.7
3,665,469	-		GFF3617	0.22	-0.3
3,665,469	-		GFF3617	0.22	+1.0
3,665,469	-		GFF3617	0.22	-0.9
3,665,469	-		GFF3617	0.22	+0.2
3,665,469	-		GFF3617	0.22	+1.4
3,665,469	-		GFF3617	0.22	+1.0
3,665,469	-		GFF3617	0.22	-0.6
3,665,469	-		GFF3617	0.22	+0.8
3,665,469	-		GFF3617	0.22	-0.5
3,665,469	-		GFF3617	0.22	-1.2
3,665,469	-		GFF3617	0.22	+1.2
3,665,469	-		GFF3617	0.22	+0.3
3,665,469	-		GFF3617	0.22	-0.0
3,665,469	-		GFF3617	0.22	+0.4
3,665,543	-		GFF3617	0.27	-0.7
3,665,572	-		GFF3617	0.28	+0.2
3,665,577	-		GFF3617	0.29	-0.7
3,665,590	+		GFF3617	0.30	-1.9
3,665,590	+		GFF3617	0.30	-1.7
3,665,590	+		GFF3617	0.30	-2.3
3,665,598	-		GFF3617	0.30	-0.0
3,665,656	+		GFF3617	0.34	-1.5
3,665,663	-		GFF3617	0.34	-0.0
3,665,664	-		GFF3617	0.34	+1.1
3,665,686	-		GFF3617	0.36	+0.8
3,665,696	+		GFF3617	0.36	-1.4
3,665,698	-		GFF3617	0.37	+0.3
3,665,703	-		GFF3617	0.37	-0.1
3,665,724	+		GFF3617	0.38	+0.5
3,665,726	+		GFF3617	0.38	+0.4
3,665,726	+		GFF3617	0.38	+0.5
3,665,726	+		GFF3617	0.38	+0.5
3,665,732	-		GFF3617	0.39	-0.4
3,665,732	-		GFF3617	0.39	-0.5
3,665,734	-		GFF3617	0.39	+1.1
3,665,734	-		GFF3617	0.39	-0.6
3,665,734	-		GFF3617	0.39	-0.6
3,665,734	-		GFF3617	0.39	+0.0
3,665,758	-		GFF3617	0.40	-1.1
3,665,804	+		GFF3617	0.43	+0.1
3,665,804	+		GFF3617	0.43	-0.1
3,665,827	+		GFF3617	0.45	-1.4
3,665,843	-		GFF3617	0.46	-1.8
3,665,869	-		GFF3617	0.47	-1.6
3,665,883	+		GFF3617	0.48	-1.3
3,665,889	-		GFF3617	0.49	-0.4
3,665,891	-		GFF3617	0.49	-0.5
3,665,891	-		GFF3617	0.49	-0.5
3,665,891	-		GFF3617	0.49	-2.4