Strain Fitness in Sphingobium sp. HT1-2 around GFF3607

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,654,173	+		GFF3606	0.86	-0.0
3,654,203	-		GFF3606	0.87	-0.2
3,654,209	-		GFF3606	0.87	-0.5
3,654,230	+		GFF3606	0.87	+0.9
3,654,230	+		GFF3606	0.87	+1.1
3,654,230	+		GFF3606	0.87	-1.0
3,654,230	+		GFF3606	0.87	+0.1
3,654,238	-		GFF3606	0.88	+0.9
3,654,238	-		GFF3606	0.88	-2.0
3,654,238	-		GFF3606	0.88	-2.1
3,654,238	-		GFF3606	0.88	-0.6
3,654,238	-		GFF3606	0.88	+0.4
3,654,238	-		GFF3606	0.88	+0.4
3,654,282	+		GFF3606	0.89	+0.7
3,654,282	+		GFF3606	0.89	-0.8
3,654,282	+		GFF3606	0.89	-0.2
3,654,289	-		GFF3606	0.89	-0.2
3,654,290	-		GFF3606	0.89	-0.5
3,654,290	-		GFF3606	0.89	+0.6
3,654,290	-		GFF3606	0.89	-2.0
3,654,290	-		GFF3606	0.89	-0.4
3,654,290	-		GFF3606	0.89	+1.3
3,654,290	-		GFF3606	0.89	-0.6
3,654,290	-		GFF3606	0.89	-1.5
3,654,292	+		GFF3606	0.89	+0.4
3,654,292	+		GFF3606	0.89	-1.1
3,654,292	+		GFF3606	0.89	-0.3
3,654,300	-		GFF3606	0.89	-0.7
3,654,300	-		GFF3606	0.89	-1.2
3,654,300	-		GFF3606	0.89	+0.6
3,654,307	-		GFF3606	0.90	+1.1
3,654,323	+				+0.5
3,654,331	-				+0.0
3,654,338	+				-0.8
3,654,338	+				-0.7
3,654,339	+				-0.5
3,654,346	-				-0.3
3,654,346	-				-1.8
3,654,346	-				-1.3
3,654,346	-				+0.6
3,654,346	-				-0.3
3,654,362	-				+0.1
3,654,364	+				+0.6
3,654,395	+				+0.2
3,654,396	+				-0.7
3,654,403	-				-0.1
3,654,404	-				+1.1
3,654,420	+				-0.6
3,654,425	+				-0.3
3,654,428	-				-1.0
3,654,430	+				-0.1
3,654,433	-				-1.3
3,654,465	-				+0.4
3,654,468	+				-0.6
3,654,482	+				-0.0
3,654,487	-				-1.1
3,654,507	+				+1.1
3,654,513	+				+0.3
3,654,516	+				-0.1
3,654,516	+				+0.6
3,654,529	-				-0.0
3,654,531	+				-0.4
3,654,531	+				+0.3
3,654,531	+				+1.0
3,654,536	+				+0.4
3,654,539	-				-1.0
3,654,539	-				+1.3
3,654,544	-				+1.0
3,654,555	+				+0.5
3,654,574	-				-1.0
3,654,576	+				-1.3
3,654,582	-				-1.9
3,654,592	-				-1.8
3,654,595	+				+0.2
3,654,601	+				-0.4
3,654,603	-				-0.4
3,654,603	-				-1.6
3,654,608	-				-0.1
3,654,619	+				+1.1
3,654,619	+				-1.9
3,654,619	+				-0.0
3,654,625	-				-0.0
3,654,627	-				+0.3
3,654,652	+				+1.5
3,654,652	+				-1.1
3,654,652	+				-0.9
3,654,652	+				+1.5
3,654,660	-				-0.3
3,654,660	-				+0.3
3,654,660	-				-1.9
3,654,660	-				-0.6
3,654,665	+				+0.4
3,654,665	+				+0.3
3,654,673	-				-0.6
3,654,682	+				+1.3
3,654,682	+				-0.0
3,654,690	-				+1.1
3,654,691	-				+0.4
3,654,731	+				+1.2
3,654,735	+				-1.4
3,654,747	-				-0.1
3,654,769	-				+0.7
3,654,777	+				-1.6
3,654,778	+				-0.4
3,654,781	-				-0.8
3,654,786	-				-2.0
3,654,794	+				-0.6
3,654,802	+				+0.2
3,654,802	+				-0.0
3,654,802	+				+0.7
3,654,802	+				-0.9
3,654,802	+				-1.5
3,654,802	+				-0.7
3,654,802	-				-1.5
3,654,810	-				-1.3
3,654,810	-				-1.3
3,654,832	+				-0.5
3,654,835	-				+0.7
3,654,853	+				-0.2
3,654,854	-				+0.3
3,654,861	-				-0.0
3,654,861	-				-0.4
3,654,871	-				+0.8
3,654,871	-				-2.2
3,654,871	-				+0.8
3,654,894	+				-2.0
3,654,896	+				-0.3
3,654,896	+				-0.5
3,654,896	+				+0.6
3,654,904	-				-0.5
3,654,904	-				+0.6
3,654,904	-				+1.1
3,654,904	-				+1.1
3,654,927	-				-0.4
3,654,961	+				-1.3
3,654,974	+				-2.2
3,654,974	+				-0.0
3,654,979	+				-0.8
3,654,981	+				+0.2
3,654,982	-				+0.6
3,654,984	+				-0.2
3,654,989	+				-1.5
3,654,989	+				-1.0
3,654,997	-				+0.5
3,654,998	+				-2.3
3,654,998	+				+0.3
3,655,002	+				+0.9
3,655,015	+				+0.4
3,655,015	-				-1.8
3,655,015	-				-0.2
3,655,020	+				-0.3
3,655,020	+				+0.1
3,655,028	-				+1.4
3,655,030	+				-0.6
3,655,038	-				+1.5
3,655,038	-				+0.2
3,655,038	-				+0.2
3,655,038	-				+0.4
3,655,038	-				-0.9
3,655,038	-				+0.2
3,655,039	-				-0.4
3,655,039	-				+0.7
3,655,054	+				-0.2
3,655,057	-				-0.3
3,655,059	+				+0.1
3,655,062	-				-0.4
3,655,072	-				+2.1
3,655,091	-				+1.5
3,655,095	+				+1.0
3,655,099	+				+0.2
3,655,103	-				-0.9
3,655,107	-				-1.6
3,655,152	+				-0.8
3,655,152	+				-0.3
3,655,155	-				-0.5
3,655,157	-				-0.1
3,655,160	-				+0.2
3,655,160	-				-0.1
3,655,160	-				-1.0
3,655,160	-				-0.8
3,655,160	-				-0.3
3,655,160	-				-1.7
3,655,160	-				-2.2
3,655,160	-				-1.1
3,655,170	-				-0.9
3,655,171	+				-1.3
3,655,188	+				-0.4
3,655,188	-				-0.4
3,655,206	-		GFF3607	0.14	-0.6
3,655,223	+		GFF3607	0.19	-0.1
3,655,223	+		GFF3607	0.19	-1.3
3,655,231	-		GFF3607	0.22	-1.3
3,655,231	-		GFF3607	0.22	+1.6
3,655,231	-		GFF3607	0.22	-0.4
3,655,231	-		GFF3607	0.22	-0.2
3,655,254	-		GFF3607	0.29	-2.1
3,655,254	-		GFF3607	0.29	+0.4
3,655,278	+		GFF3607	0.36	-2.0
3,655,305	+		GFF3607	0.44	+0.0
3,655,313	+		GFF3607	0.47	-0.6
3,655,313	-		GFF3607	0.47	-0.4
3,655,336	+		GFF3607	0.54	+0.3
3,655,344	-		GFF3607	0.56	+0.6
3,655,352	+		GFF3607	0.58	-1.5
3,655,354	+		GFF3607	0.59	+0.3
3,655,357	+		GFF3607	0.60	+0.3
3,655,384	+		GFF3607	0.68	-0.9
3,655,384	+		GFF3607	0.68	+0.5
3,655,421	-		GFF3607	0.79	-1.9
3,655,435	-		GFF3607	0.84	+0.6
3,655,457	-				-0.1
3,655,457	-				-2.0
3,655,460	+				-0.4
3,655,525	+				-0.9
3,655,525	+				-1.5
3,655,526	+				-1.0
3,655,532	+				-0.7
3,655,533	-				-1.3
3,655,533	-				-0.5
3,655,535	-				+0.6
3,655,537	+				-1.6
3,655,537	+				-0.5
3,655,540	-				-0.0
3,655,549	+				-0.5
3,655,549	+				-1.2
3,655,549	+				+0.6
3,655,549	+				-0.7
3,655,556	+				+0.1
3,655,557	-				+1.0
3,655,557	-				+0.6
3,655,557	-				-0.1
3,655,557	-				-0.8
3,655,562	-				-0.7
3,655,564	+				-1.2
3,655,569	+				+0.4
3,655,569	+				-0.6
3,655,595	-				-2.0
3,655,614	+				-0.5
3,655,620	+				-2.2
3,655,628	-				-1.4
3,655,628	-				-0.0
3,655,705	+		GFF3608	0.11	-1.0
3,655,752	-		GFF3608	0.15	-0.4
3,655,752	-		GFF3608	0.15	+0.5
3,655,754	+		GFF3608	0.15	-0.7
3,655,759	+		GFF3608	0.16	-0.0
3,655,762	-		GFF3608	0.16	+0.8
3,655,767	-		GFF3608	0.17	+1.1
3,655,771	+		GFF3608	0.17	-0.8
3,655,772	-		GFF3608	0.17	+0.0
3,655,779	-		GFF3608	0.18	+0.5
3,655,779	-		GFF3608	0.18	+0.2
3,655,811	-		GFF3608	0.20	-1.9
3,655,841	+		GFF3608	0.23	+0.2
3,655,858	-		GFF3608	0.25	-1.7
3,655,870	-		GFF3608	0.26	-1.7
3,655,882	-		GFF3608	0.27	-0.3
3,655,882	-		GFF3608	0.27	-1.8
3,655,883	+		GFF3608	0.27	+0.4
3,655,893	+		GFF3608	0.28	+0.3
3,655,893	+		GFF3608	0.28	+0.2
3,655,893	+		GFF3608	0.28	-0.0
3,655,893	+		GFF3608	0.28	-1.2
3,655,896	-		GFF3608	0.28	+0.8
3,655,896	-		GFF3608	0.28	-0.2
3,655,898	+		GFF3608	0.28	-1.2
3,655,898	+		GFF3608	0.28	-2.0
3,655,898	+		GFF3608	0.28	-2.0
3,655,898	+		GFF3608	0.28	-0.5
3,655,898	+		GFF3608	0.28	-1.3
3,655,898	+		GFF3608	0.28	-1.4
3,655,905	+		GFF3608	0.29	-1.0
3,655,906	-		GFF3608	0.29	-0.3
3,655,906	-		GFF3608	0.29	-0.7
3,655,906	-		GFF3608	0.29	+1.3
3,655,906	-		GFF3608	0.29	+0.6
3,655,906	-		GFF3608	0.29	-0.6
3,655,906	-		GFF3608	0.29	-0.8
3,655,906	-		GFF3608	0.29	-0.7
3,655,906	-		GFF3608	0.29	+1.5
3,655,906	-		GFF3608	0.29	+0.5
3,655,906	-		GFF3608	0.29	-0.3
3,655,911	+		GFF3608	0.29	-1.4
3,655,924	-		GFF3608	0.30	+0.6
3,655,928	-		GFF3608	0.31	+1.2
3,655,933	+		GFF3608	0.31	-0.2
3,655,939	-		GFF3608	0.32	+0.3
3,655,950	+		GFF3608	0.33	+0.2
3,655,988	-		GFF3608	0.36	-1.4
3,656,001	+		GFF3608	0.37	+0.7
3,656,003	-		GFF3608	0.37	-1.1
3,656,004	-		GFF3608	0.37	-1.2
3,656,008	+		GFF3608	0.38	-0.1
3,656,013	+		GFF3608	0.38	+0.2
3,656,013	+		GFF3608	0.38	-0.5
3,656,013	+		GFF3608	0.38	-0.4
3,656,013	+		GFF3608	0.38	-2.0
3,656,014	+		GFF3608	0.38	-0.5
3,656,016	-		GFF3608	0.39	+0.6
3,656,022	-		GFF3608	0.39	-0.1
3,656,040	-		GFF3608	0.41	-0.0
3,656,062	+		GFF3608	0.43	-1.5
3,656,075	-		GFF3608	0.44	-1.0
3,656,120	-		GFF3608	0.48	+1.1
3,656,141	+		GFF3608	0.50	+0.3
3,656,141	+		GFF3608	0.50	+1.0
3,656,141	+		GFF3608	0.50	-0.2
3,656,141	+		GFF3608	0.50	-1.7
3,656,149	-		GFF3608	0.50	+0.0
3,656,149	-		GFF3608	0.50	+1.1
3,656,149	-		GFF3608	0.50	-0.7
3,656,151	+		GFF3608	0.50	-0.5
3,656,175	+		GFF3608	0.53	-1.3
3,656,175	+		GFF3608	0.53	-0.4
3,656,176	+		GFF3608	0.53	-2.9
3,656,176	+		GFF3608	0.53	+0.1
3,656,176	+		GFF3608	0.53	-1.3
3,656,184	-		GFF3608	0.53	-0.7
3,656,184	-		GFF3608	0.53	-0.1
3,656,184	-		GFF3608	0.53	-1.3
3,656,184	-		GFF3608	0.53	+0.5
3,656,184	-		GFF3608	0.53	-1.0
3,656,184	-		GFF3608	0.53	-1.6
3,656,188	+		GFF3608	0.54	-1.2
3,656,197	+		GFF3608	0.54	-2.0
3,656,198	+		GFF3608	0.55	-0.6
3,656,198	+		GFF3608	0.55	-0.3
3,656,198	+		GFF3608	0.55	-1.6
3,656,205	-		GFF3608	0.55	-0.1
3,656,210	-		GFF3608	0.56	-1.0
3,656,235	+		GFF3608	0.58	-1.4
3,656,235	+		GFF3608	0.58	-0.2
3,656,235	+		GFF3608	0.58	+0.5
3,656,235	+		GFF3608	0.58	-0.0
3,656,242	+		GFF3608	0.58	+0.5
3,656,243	-		GFF3608	0.58	-0.2
3,656,243	-		GFF3608	0.58	+0.0
3,656,243	-		GFF3608	0.58	-0.8
3,656,243	-		GFF3608	0.58	+0.3
3,656,243	-		GFF3608	0.58	-0.4
3,656,243	-		GFF3608	0.58	-1.3
3,656,243	-		GFF3608	0.58	-0.8
3,656,243	-		GFF3608	0.58	-0.6
3,656,301	+		GFF3608	0.64	+0.5
3,656,305	+		GFF3608	0.64	+0.8
3,656,314	-		GFF3608	0.65	-0.5
3,656,314	-		GFF3608	0.65	+0.2
3,656,330	+		GFF3608	0.66	+0.6
3,656,330	-		GFF3608	0.66	-0.7
3,656,335	+		GFF3608	0.67	+0.2
3,656,335	+		GFF3608	0.67	-1.2
3,656,335	+		GFF3608	0.67	+0.1
3,656,348	+		GFF3608	0.68	-0.5
3,656,371	+		GFF3608	0.70	+0.9
3,656,383	+		GFF3608	0.71	-0.4
3,656,383	+		GFF3608	0.71	+0.3
3,656,383	+		GFF3608	0.71	-0.3
3,656,383	+		GFF3608	0.71	-0.4
3,656,383	+		GFF3608	0.71	+0.7
3,656,383	+		GFF3608	0.71	-2.0
3,656,383	+		GFF3608	0.71	-0.3
3,656,383	+		GFF3608	0.71	+0.9
3,656,383	+		GFF3608	0.71	-1.4
3,656,383	+		GFF3608	0.71	+0.4
3,656,383	+		GFF3608	0.71	+0.7
3,656,383	+		GFF3608	0.71	+0.3
3,656,391	-		GFF3608	0.72	-0.0
3,656,391	-		GFF3608	0.72	-1.1
3,656,391	-		GFF3608	0.72	+0.3
3,656,391	-		GFF3608	0.72	+0.2
3,656,391	-		GFF3608	0.72	-1.5
3,656,391	-		GFF3608	0.72	-0.1
3,656,391	-		GFF3608	0.72	-0.5
3,656,391	-		GFF3608	0.72	-0.4
3,656,391	-		GFF3608	0.72	+0.7
3,656,391	-		GFF3608	0.72	-0.3
3,656,391	-		GFF3608	0.72	+0.2
3,656,391	-		GFF3608	0.72	-2.6
3,656,391	-		GFF3608	0.72	+0.1
3,656,391	-		GFF3608	0.72	-1.0
3,656,391	-		GFF3608	0.72	-1.3
3,656,409	+		GFF3608	0.73	+0.3
3,656,409	+		GFF3608	0.73	+0.0
3,656,410	-		GFF3608	0.73	-0.7
3,656,417	-		GFF3608	0.74	-2.8
3,656,417	-		GFF3608	0.74	-0.6
3,656,421	-		GFF3608	0.74	+0.1
3,656,436	+		GFF3608	0.75	-0.8
3,656,436	-		GFF3608	0.75	+0.2
3,656,436	-		GFF3608	0.75	+0.8
3,656,436	-		GFF3608	0.75	-0.5
3,656,436	-		GFF3608	0.75	+0.9
3,656,436	-		GFF3608	0.75	+0.1
3,656,436	-		GFF3608	0.75	+0.7
3,656,436	-		GFF3608	0.75	-0.1
3,656,446	-		GFF3608	0.76	-3.0
3,656,468	+		GFF3608	0.78	-1.3
3,656,476	-		GFF3608	0.79	-0.3