Strain Fitness in Sphingobium sp. HT1-2 around GFF3575

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,622,274	+				+1.2
3,622,277	+				-0.1
3,622,280	+				-0.1
3,622,280	-				-1.5
3,622,280	-				-2.0
3,622,280	-				-1.4
3,622,280	-				-1.5
3,622,280	-				-0.9
3,622,280	-				-1.8
3,622,280	-				-1.1
3,622,280	-				+1.7
3,622,280	-				-1.4
3,622,282	+				-0.1
3,622,282	+				-1.5
3,622,282	+				+0.3
3,622,282	+				+0.8
3,622,282	+				-3.7
3,622,282	+				+0.6
3,622,282	-				-0.5
3,622,288	-				-0.0
3,622,288	-				-2.7
3,622,297	+				-0.4
3,622,307	+				+0.3
3,622,307	+				+0.0
3,622,307	+				-0.4
3,622,307	+				-1.3
3,622,307	+				+0.7
3,622,307	+				+0.0
3,622,307	+				-1.3
3,622,307	+				-0.7
3,622,307	+				+0.1
3,622,307	+				+0.7
3,622,307	+				-0.4
3,622,312	+				-1.5
3,622,312	+				+0.1
3,622,315	-				-0.9
3,622,315	-				-0.4
3,622,328	+				-0.1
3,622,328	+				+1.4
3,622,346	+				-1.9
3,622,346	+				-1.6
3,622,346	+				-0.4
3,622,351	+				-0.8
3,622,354	-				-1.0
3,622,364	-				+0.9
3,622,376	+				-2.5
3,622,378	+				-1.4
3,622,392	+				-0.7
3,622,393	+				-1.4
3,622,408	+				-0.4
3,622,408	+				-0.5
3,622,408	+				-0.2
3,622,408	+				+0.2
3,622,408	+				-0.2
3,622,408	+				-1.3
3,622,416	-				-0.5
3,622,530	+				+0.7
3,622,532	-				-2.7
3,622,538	-		GFF3572	0.12	-0.7
3,622,538	-		GFF3572	0.12	-1.2
3,622,538	-		GFF3572	0.12	-0.5
3,622,538	-		GFF3572	0.12	-2.3
3,622,538	-		GFF3572	0.12	+0.4
3,622,560	+		GFF3572	0.21	-2.0
3,622,560	+		GFF3572	0.21	+0.5
3,622,560	+		GFF3572	0.21	-0.5
3,622,568	-		GFF3572	0.24	-1.2
3,622,568	-		GFF3572	0.24	-0.3
3,622,616	+		GFF3572	0.43	-0.0
3,622,616	+		GFF3572	0.43	+0.1
3,622,634	+		GFF3572	0.50	+0.1
3,622,642	+		GFF3572	0.53	+0.3
3,622,642	+		GFF3572	0.53	+0.9
3,622,642	+		GFF3572	0.53	+1.4
3,622,642	-		GFF3572	0.53	-1.6
3,622,652	+		GFF3572	0.57	-0.0
3,622,657	+		GFF3572	0.59	-0.5
3,622,660	-		GFF3572	0.60	-0.7
3,622,714	+		GFF3572	0.82	+0.8
3,622,732	+		GFF3572	0.89	-1.6
3,622,740	-				-1.8
3,622,742	+				-0.0
3,622,752	-				+0.1
3,622,754	+				+0.1
3,622,762	-				-0.5
3,622,800	-				-0.4
3,622,858	+				-0.2
3,622,859	-				-1.4
3,622,906	+		GFF3573	0.29	-1.3
3,622,914	-		GFF3573	0.34	+1.4
3,622,925	+		GFF3573	0.40	-0.3
3,622,930	-		GFF3573	0.43	-0.3
3,622,933	-		GFF3573	0.44	+0.0
3,622,936	-		GFF3573	0.46	-1.6
3,622,936	-		GFF3573	0.46	+1.0
3,622,937	+		GFF3573	0.47	-2.3
3,622,937	+		GFF3573	0.47	+0.2
3,622,947	-		GFF3573	0.52	-0.7
3,622,972	+		GFF3573	0.66	-1.8
3,622,984	+		GFF3573	0.73	-0.6
3,622,984	+		GFF3573	0.73	-1.5
3,622,984	+		GFF3573	0.73	-2.0
3,622,988	+		GFF3573	0.75	+1.1
3,622,990	+		GFF3573	0.76	-1.8
3,622,991	-		GFF3573	0.77	-0.4
3,622,992	-		GFF3573	0.77	-0.4
3,622,998	-		GFF3573	0.81	-2.4
3,623,000	+		GFF3573	0.82	+0.1
3,623,000	-		GFF3573	0.82	-0.2
3,623,009	+		GFF3573	0.87	+1.0
3,623,009	+		GFF3573	0.87	+0.4
3,623,019	+				-0.6
3,623,019	+				-0.4
3,623,019	+				-1.8
3,623,027	-				-0.4
3,623,027	-				-1.6
3,623,029	+				-0.1
3,623,029	+				-2.6
3,623,032	-				-0.4
3,623,043	+				-2.2
3,623,043	+				+0.1
3,623,053	+		GFF3574	0.11	-0.2
3,623,076	+		GFF3574	0.23	+0.4
3,623,088	-		GFF3574	0.30	+0.0
3,623,099	+		GFF3574	0.35	+0.1
3,623,099	+		GFF3574	0.35	-0.5
3,623,104	+		GFF3574	0.38	-1.2
3,623,107	-		GFF3574	0.40	-0.7
3,623,109	+		GFF3574	0.41	-1.2
3,623,111	-		GFF3574	0.42	-0.5
3,623,115	+		GFF3574	0.44	+0.1
3,623,142	+		GFF3574	0.58	-1.5
3,623,144	+		GFF3574	0.59	-0.7
3,623,144	+		GFF3574	0.59	+0.5
3,623,147	+		GFF3574	0.61	+0.4
3,623,152	+		GFF3574	0.63	-1.2
3,623,152	+		GFF3574	0.63	-0.7
3,623,152	-		GFF3574	0.63	+0.6
3,623,152	-		GFF3574	0.63	-1.6
3,623,152	-		GFF3574	0.63	-1.0
3,623,152	-		GFF3574	0.63	-1.3
3,623,160	-		GFF3574	0.68	-0.4
3,623,160	-		GFF3574	0.68	+0.5
3,623,162	-		GFF3574	0.69	-1.5
3,623,172	+		GFF3574	0.74	+0.7
3,623,175	-		GFF3574	0.76	-1.0
3,623,177	+		GFF3574	0.77	+0.3
3,623,177	+		GFF3574	0.77	-0.4
3,623,177	+		GFF3574	0.77	-0.0
3,623,177	+		GFF3574	0.77	-1.1
3,623,177	+		GFF3574	0.77	-0.1
3,623,177	+		GFF3574	0.77	+0.4
3,623,185	-		GFF3574	0.81	-1.7
3,623,185	-		GFF3574	0.81	-1.1
3,623,185	-		GFF3574	0.81	-1.8
3,623,185	-		GFF3574	0.81	-2.0
3,623,193	+		GFF3574	0.85	+0.3
3,623,241	+				-1.7
3,623,336	+				-1.5
3,623,342	-				-0.1
3,623,344	-				+1.5
3,623,366	-		GFF3575	0.11	-1.3
3,623,393	+		GFF3575	0.15	-1.1
3,623,393	-		GFF3575	0.15	-0.5
3,623,408	-		GFF3575	0.17	-0.1
3,623,410	-		GFF3575	0.17	-0.9
3,623,421	+		GFF3575	0.18	-0.1
3,623,428	+		GFF3575	0.19	-1.5
3,623,429	+		GFF3575	0.19	+0.6
3,623,429	+		GFF3575	0.19	-0.7
3,623,429	+		GFF3575	0.19	-1.4
3,623,429	+		GFF3575	0.19	+0.3
3,623,429	+		GFF3575	0.19	-1.4
3,623,429	-		GFF3575	0.19	-3.0
3,623,429	-		GFF3575	0.19	-0.1
3,623,429	-		GFF3575	0.19	-0.3
3,623,429	-		GFF3575	0.19	-0.5
3,623,429	-		GFF3575	0.19	+0.5
3,623,437	-		GFF3575	0.20	+0.5
3,623,437	-		GFF3575	0.20	-0.2
3,623,437	-		GFF3575	0.20	-1.1
3,623,437	-		GFF3575	0.20	-1.8
3,623,437	-		GFF3575	0.20	-0.7
3,623,437	-		GFF3575	0.20	-0.3
3,623,437	-		GFF3575	0.20	+0.3
3,623,445	-		GFF3575	0.21	+0.5
3,623,445	-		GFF3575	0.21	+0.0
3,623,461	-		GFF3575	0.23	+0.3
3,623,464	+		GFF3575	0.23	-1.7
3,623,472	-		GFF3575	0.24	-0.4
3,623,472	-		GFF3575	0.24	-0.3
3,623,472	-		GFF3575	0.24	-0.6
3,623,472	-		GFF3575	0.24	+0.7
3,623,472	-		GFF3575	0.24	-0.5
3,623,472	-		GFF3575	0.24	+0.4
3,623,472	-		GFF3575	0.24	-0.1
3,623,472	-		GFF3575	0.24	+0.6
3,623,472	-		GFF3575	0.24	+0.3
3,623,535	+		GFF3575	0.32	-1.8
3,623,535	+		GFF3575	0.32	-1.2
3,623,538	+		GFF3575	0.33	-1.4
3,623,543	-		GFF3575	0.33	-1.5
3,623,543	-		GFF3575	0.33	-1.0
3,623,543	-		GFF3575	0.33	-0.9
3,623,543	-		GFF3575	0.33	-0.8
3,623,556	-		GFF3575	0.35	-0.3
3,623,556	-		GFF3575	0.35	+1.9
3,623,556	-		GFF3575	0.35	+0.4
3,623,566	-		GFF3575	0.36	+0.7
3,623,566	-		GFF3575	0.36	-0.4
3,623,566	-		GFF3575	0.36	-0.1
3,623,576	-		GFF3575	0.37	-1.2
3,623,599	+		GFF3575	0.40	-1.3
3,623,600	-		GFF3575	0.40	+0.7
3,623,600	-		GFF3575	0.40	-0.9
3,623,602	-		GFF3575	0.40	-0.1
3,623,602	-		GFF3575	0.40	-0.6
3,623,607	+		GFF3575	0.41	+0.6
3,623,607	-		GFF3575	0.41	-0.7
3,623,617	-		GFF3575	0.42	+1.0
3,623,647	+		GFF3575	0.46	+0.9
3,623,647	+		GFF3575	0.46	+1.1
3,623,650	-		GFF3575	0.46	-2.5
3,623,650	-		GFF3575	0.46	-2.7
3,623,655	-		GFF3575	0.47	-0.8
3,623,655	-		GFF3575	0.47	-0.9
3,623,667	-		GFF3575	0.48	-0.7
3,623,725	-		GFF3575	0.56	+0.1
3,623,753	-		GFF3575	0.59	+0.4
3,623,755	+		GFF3575	0.59	-0.2
3,623,762	+		GFF3575	0.60	-1.2
3,623,762	+		GFF3575	0.60	+0.2
3,623,763	-		GFF3575	0.60	-0.4
3,623,767	+		GFF3575	0.61	-2.0
3,623,770	-		GFF3575	0.61	+0.4
3,623,770	-		GFF3575	0.61	+0.7
3,623,770	-		GFF3575	0.61	-2.2
3,623,796	+		GFF3575	0.64	-1.3
3,623,813	-		GFF3575	0.66	-0.6
3,623,815	+		GFF3575	0.67	+1.1
3,623,815	+		GFF3575	0.67	-0.5
3,623,828	-		GFF3575	0.68	-0.1
3,623,835	-		GFF3575	0.69	+0.5
3,623,847	-		GFF3575	0.71	-0.1
3,623,849	+		GFF3575	0.71	-0.4
3,623,849	+		GFF3575	0.71	-2.0
3,623,857	-		GFF3575	0.72	-0.6
3,623,858	+		GFF3575	0.72	-0.1
3,623,858	+		GFF3575	0.72	+0.3
3,623,863	+		GFF3575	0.73	-1.0
3,623,866	-		GFF3575	0.73	-0.3
3,623,866	-		GFF3575	0.73	-0.0
3,623,866	-		GFF3575	0.73	-1.9
3,623,866	-		GFF3575	0.73	-0.3
3,623,866	-		GFF3575	0.73	+0.8
3,623,871	-		GFF3575	0.74	-0.3
3,623,873	+		GFF3575	0.74	-0.4
3,623,877	+		GFF3575	0.74	-2.0
3,623,877	+		GFF3575	0.74	+0.5
3,623,877	+		GFF3575	0.74	+0.5
3,623,879	+		GFF3575	0.75	-0.6
3,623,881	-		GFF3575	0.75	-0.0
3,623,883	+		GFF3575	0.75	-1.1
3,623,885	-		GFF3575	0.75	-1.7
3,623,885	-		GFF3575	0.75	-0.6
3,623,922	+		GFF3575	0.80	-2.0
3,623,925	+		GFF3575	0.80	+0.1
3,623,928	+		GFF3575	0.81	-1.6
3,623,932	+		GFF3575	0.81	-0.7
3,623,932	+		GFF3575	0.81	+0.5
3,623,932	+		GFF3575	0.81	-0.6
3,623,935	+		GFF3575	0.81	-0.4
3,623,938	-		GFF3575	0.82	-2.0
3,623,940	-		GFF3575	0.82	-0.2
3,623,940	-		GFF3575	0.82	+0.7
3,623,943	-		GFF3575	0.82	-0.6
3,623,948	-		GFF3575	0.83	+1.5
3,623,948	-		GFF3575	0.83	+0.2
3,623,955	+		GFF3575	0.84	-1.9
3,623,961	+		GFF3575	0.85	-0.6
3,623,961	+		GFF3575	0.85	-0.3
3,623,961	+		GFF3575	0.85	+1.7
3,623,961	+		GFF3575	0.85	-0.4
3,623,961	+		GFF3575	0.85	-1.4
3,623,961	+		GFF3575	0.85	-2.5
3,623,961	+		GFF3575	0.85	-0.0
3,623,961	+		GFF3575	0.85	-0.2
3,623,962	+		GFF3575	0.85	-1.3
3,623,963	-		GFF3575	0.85	-0.2
3,623,969	-		GFF3575	0.86	+0.5
3,623,969	-		GFF3575	0.86	+0.6
3,624,004	+				-0.7
3,624,005	-				+0.6
3,624,005	-				-1.6
3,624,006	-				+0.9
3,624,033	-				-0.8
3,624,101	-				-0.1
3,624,147	+				-0.5
3,624,161	+				-0.9
3,624,167	-				-1.0
3,624,211	+				-0.7
3,624,218	+				+0.6
3,624,232	+				+0.5
3,624,240	-				+0.6
3,624,240	-				+0.6
3,624,240	-				+0.6
3,624,256	+				+0.8
3,624,264	-				-2.0
3,624,267	-				+0.1
3,624,283	-				+0.6
3,624,294	+				-0.3
3,624,359	+				-1.3
3,624,359	+				-0.5
3,624,367	-				-3.2
3,624,367	-				+0.6
3,624,367	-				-0.4
3,624,367	-				+1.1
3,624,399	+				-2.4
3,624,399	+				+0.2
3,624,399	+				-2.2
3,624,402	-				-0.0
3,624,407	-				-1.5
3,624,407	-				-0.1
3,624,423	+				-2.4
3,624,431	-		GFF3576	0.10	-0.2
3,624,431	-		GFF3576	0.10	+0.6
3,624,455	+		GFF3576	0.14	-1.4
3,624,463	+		GFF3576	0.15	-1.3
3,624,465	+		GFF3576	0.16	-2.0
3,624,473	-		GFF3576	0.17	+0.7
3,624,482	+		GFF3576	0.19	-2.4
3,624,489	+		GFF3576	0.20	+0.3
3,624,489	+		GFF3576	0.20	+0.6
3,624,496	+		GFF3576	0.21	-0.1
3,624,497	-		GFF3576	0.21	-0.1
3,624,497	-		GFF3576	0.21	+0.5
3,624,497	-		GFF3576	0.21	-0.3
3,624,501	+		GFF3576	0.22	-0.8
3,624,504	-		GFF3576	0.22	-0.1
3,624,504	-		GFF3576	0.22	-0.7
3,624,504	-		GFF3576	0.22	+0.5
3,624,506	+		GFF3576	0.23	-0.5
3,624,506	+		GFF3576	0.23	+0.7
3,624,506	+		GFF3576	0.23	-0.6
3,624,509	-		GFF3576	0.23	-1.8
3,624,509	-		GFF3576	0.23	+0.1
3,624,509	-		GFF3576	0.23	+1.7
3,624,510	+		GFF3576	0.23	+1.0
3,624,514	-		GFF3576	0.24	-0.1
3,624,514	-		GFF3576	0.24	-1.5
3,624,517	-		GFF3576	0.25	-2.1
3,624,523	+		GFF3576	0.26	-2.5
3,624,539	+		GFF3576	0.28	-1.0
3,624,539	+		GFF3576	0.28	+0.1
3,624,544	+		GFF3576	0.29	-0.5
3,624,544	+		GFF3576	0.29	-0.7
3,624,544	+		GFF3576	0.29	-0.6
3,624,544	+		GFF3576	0.29	-1.4
3,624,544	+		GFF3576	0.29	-0.8
3,624,544	+		GFF3576	0.29	+0.0
3,624,544	+		GFF3576	0.29	-1.4
3,624,546	+		GFF3576	0.29	-1.5
3,624,546	+		GFF3576	0.29	+0.3
3,624,552	-		GFF3576	0.30	-1.0
3,624,552	-		GFF3576	0.30	-1.7
3,624,552	-		GFF3576	0.30	-0.1
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