Strain Fitness in Sphingobium sp. HT1-2 around GFF3561

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,605,388	+		GFF3560	0.11	-1.5
3,605,389	-		GFF3560	0.11	-0.5
3,605,437	+		GFF3560	0.16	-1.9
3,605,445	-		GFF3560	0.16	+1.3
3,605,455	-		GFF3560	0.17	-0.3
3,605,488	-		GFF3560	0.21	-0.1
3,605,495	-		GFF3560	0.21	+0.4
3,605,500	+		GFF3560	0.22	+0.4
3,605,508	-		GFF3560	0.23	-1.0
3,605,508	-		GFF3560	0.23	-0.1
3,605,510	+		GFF3560	0.23	+0.1
3,605,510	+		GFF3560	0.23	-0.7
3,605,520	+		GFF3560	0.24	-0.4
3,605,520	+		GFF3560	0.24	+0.2
3,605,522	+		GFF3560	0.24	-2.1
3,605,530	+		GFF3560	0.25	-1.0
3,605,530	-		GFF3560	0.25	+0.4
3,605,538	-		GFF3560	0.26	-0.5
3,605,539	+		GFF3560	0.26	-0.4
3,605,589	-		GFF3560	0.31	+0.0
3,605,597	+		GFF3560	0.32	+1.1
3,605,617	-		GFF3560	0.34	+0.6
3,605,620	-		GFF3560	0.34	+1.1
3,605,637	+		GFF3560	0.36	-0.0
3,605,642	+		GFF3560	0.36	-0.8
3,605,657	+		GFF3560	0.38	+0.6
3,605,657	+		GFF3560	0.38	-0.2
3,605,665	-		GFF3560	0.38	+1.3
3,605,665	-		GFF3560	0.38	+0.9
3,605,665	-		GFF3560	0.38	-2.4
3,605,665	-		GFF3560	0.38	-1.8
3,605,665	-		GFF3560	0.38	-0.5
3,605,682	-		GFF3560	0.40	+0.5
3,605,682	-		GFF3560	0.40	-1.0
3,605,683	+		GFF3560	0.40	+1.1
3,605,683	+		GFF3560	0.40	-1.4
3,605,683	+		GFF3560	0.40	-1.9
3,605,683	+		GFF3560	0.40	-0.4
3,605,683	+		GFF3560	0.40	-1.0
3,605,683	+		GFF3560	0.40	+1.5
3,605,683	+		GFF3560	0.40	-0.8
3,605,683	+		GFF3560	0.40	-0.1
3,605,683	+		GFF3560	0.40	+0.8
3,605,683	+		GFF3560	0.40	-0.1
3,605,691	-		GFF3560	0.41	-0.5
3,605,691	-		GFF3560	0.41	+1.5
3,605,691	-		GFF3560	0.41	+0.2
3,605,691	-		GFF3560	0.41	-0.2
3,605,691	-		GFF3560	0.41	-0.1
3,605,691	-		GFF3560	0.41	-0.4
3,605,691	-		GFF3560	0.41	-0.2
3,605,691	-		GFF3560	0.41	-0.7
3,605,701	-		GFF3560	0.42	+1.2
3,605,704	+		GFF3560	0.42	-0.2
3,605,704	+		GFF3560	0.42	+0.5
3,605,704	+		GFF3560	0.42	+0.3
3,605,704	+		GFF3560	0.42	+0.0
3,605,712	-		GFF3560	0.43	-0.5
3,605,714	+		GFF3560	0.43	+0.0
3,605,714	+		GFF3560	0.43	-0.6
3,605,714	+		GFF3560	0.43	+1.0
3,605,714	+		GFF3560	0.43	-1.0
3,605,722	-		GFF3560	0.44	-0.0
3,605,729	+		GFF3560	0.45	+0.2
3,605,741	+		GFF3560	0.46	+0.3
3,605,748	+		GFF3560	0.47	+1.3
3,605,748	+		GFF3560	0.47	+0.0
3,605,759	-		GFF3560	0.48	-0.6
3,605,767	+		GFF3560	0.49	-2.2
3,605,767	+		GFF3560	0.49	+0.7
3,605,767	+		GFF3560	0.49	+1.1
3,605,783	+		GFF3560	0.50	-1.0
3,605,783	+		GFF3560	0.50	+1.1
3,605,783	+		GFF3560	0.50	-0.7
3,605,783	+		GFF3560	0.50	-0.0
3,605,783	+		GFF3560	0.50	-2.2
3,605,783	+		GFF3560	0.50	-0.2
3,605,783	+		GFF3560	0.50	+2.3
3,605,791	-		GFF3560	0.51	-0.3
3,605,791	-		GFF3560	0.51	-0.2
3,605,792	-		GFF3560	0.51	-0.1
3,605,792	-		GFF3560	0.51	-0.0
3,605,793	+		GFF3560	0.51	-0.6
3,605,795	+		GFF3560	0.52	+0.1
3,605,796	+		GFF3560	0.52	-0.4
3,605,804	-		GFF3560	0.52	+1.1
3,605,810	+		GFF3560	0.53	-2.1
3,605,815	+		GFF3560	0.54	+0.4
3,605,815	+		GFF3560	0.54	+1.0
3,605,815	+		GFF3560	0.54	-0.0
3,605,823	+		GFF3560	0.54	-0.2
3,605,823	+		GFF3560	0.54	-1.2
3,605,823	+		GFF3560	0.54	-0.6
3,605,823	+		GFF3560	0.54	-0.8
3,605,823	-		GFF3560	0.54	+0.6
3,605,823	-		GFF3560	0.54	-1.4
3,605,823	-		GFF3560	0.54	-1.9
3,605,830	+		GFF3560	0.55	-0.0
3,605,830	+		GFF3560	0.55	-0.8
3,605,831	-		GFF3560	0.55	-0.6
3,605,831	-		GFF3560	0.55	-0.2
3,605,831	-		GFF3560	0.55	+0.2
3,605,835	-		GFF3560	0.56	-0.2
3,605,837	+		GFF3560	0.56	+0.7
3,605,839	-		GFF3560	0.56	-0.7
3,605,852	+		GFF3560	0.57	-1.6
3,605,855	+		GFF3560	0.58	-1.5
3,605,878	+		GFF3560	0.60	-0.4
3,605,878	+		GFF3560	0.60	-0.9
3,605,878	+		GFF3560	0.60	-1.0
3,605,886	-		GFF3560	0.61	-0.5
3,605,909	+		GFF3560	0.63	-0.5
3,605,909	+		GFF3560	0.63	+1.0
3,605,909	+		GFF3560	0.63	+0.8
3,605,909	+		GFF3560	0.63	-1.5
3,605,916	+		GFF3560	0.64	+0.4
3,605,916	+		GFF3560	0.64	-0.5
3,605,916	+		GFF3560	0.64	-0.9
3,605,917	-		GFF3560	0.64	-0.5
3,605,917	-		GFF3560	0.64	+1.2
3,605,917	-		GFF3560	0.64	-1.5
3,605,924	-		GFF3560	0.64	+0.1
3,605,924	-		GFF3560	0.64	-0.1
3,605,933	+		GFF3560	0.65	+0.1
3,605,933	+		GFF3560	0.65	-2.5
3,605,933	+		GFF3560	0.65	-0.3
3,605,933	+		GFF3560	0.65	-1.3
3,605,933	+		GFF3560	0.65	-0.3
3,605,933	+		GFF3560	0.65	-1.6
3,605,934	-		GFF3560	0.65	-0.9
3,605,934	-		GFF3560	0.65	-2.8
3,605,941	-		GFF3560	0.66	-1.8
3,605,968	+		GFF3560	0.69	+0.1
3,605,968	+		GFF3560	0.69	-0.3
3,605,968	+		GFF3560	0.69	+0.8
3,605,968	+		GFF3560	0.69	+0.3
3,605,968	+		GFF3560	0.69	-0.8
3,605,968	+		GFF3560	0.69	+0.1
3,605,968	+		GFF3560	0.69	+0.5
3,605,976	-		GFF3560	0.70	-0.0
3,605,976	-		GFF3560	0.70	+0.0
3,605,976	-		GFF3560	0.70	-0.3
3,605,976	-		GFF3560	0.70	+0.0
3,605,983	+		GFF3560	0.70	-0.5
3,605,985	+		GFF3560	0.71	+0.7
3,605,989	+		GFF3560	0.71	+0.5
3,605,990	+		GFF3560	0.71	+0.1
3,605,990	+		GFF3560	0.71	+0.0
3,605,990	+		GFF3560	0.71	+0.4
3,605,993	-		GFF3560	0.71	+0.1
3,605,998	-		GFF3560	0.72	-0.5
3,605,998	-		GFF3560	0.72	-0.1
3,606,000	+		GFF3560	0.72	-1.2
3,606,000	+		GFF3560	0.72	-0.7
3,606,005	-		GFF3560	0.73	-0.2
3,606,007	+		GFF3560	0.73	-1.4
3,606,008	-		GFF3560	0.73	-0.2
3,606,008	-		GFF3560	0.73	-1.6
3,606,012	+		GFF3560	0.73	-0.1
3,606,012	+		GFF3560	0.73	-1.5
3,606,012	+		GFF3560	0.73	-0.7
3,606,012	+		GFF3560	0.73	-0.2
3,606,012	+		GFF3560	0.73	-0.6
3,606,017	+		GFF3560	0.74	-1.7
3,606,020	-		GFF3560	0.74	-2.2
3,606,020	-		GFF3560	0.74	-0.4
3,606,020	-		GFF3560	0.74	+0.4
3,606,022	+		GFF3560	0.74	+0.3
3,606,025	+		GFF3560	0.75	+0.3
3,606,033	-		GFF3560	0.75	-1.4
3,606,052	-		GFF3560	0.77	-1.2
3,606,054	+		GFF3560	0.78	+0.8
3,606,054	+		GFF3560	0.78	+0.9
3,606,054	+		GFF3560	0.78	-0.5
3,606,054	+		GFF3560	0.78	-0.6
3,606,054	+		GFF3560	0.78	-0.6
3,606,054	+		GFF3560	0.78	+0.1
3,606,054	+		GFF3560	0.78	-1.1
3,606,054	+		GFF3560	0.78	-0.4
3,606,054	+		GFF3560	0.78	-0.3
3,606,058	+		GFF3560	0.78	+0.5
3,606,059	+		GFF3560	0.78	-0.7
3,606,067	-		GFF3560	0.79	+0.4
3,606,098	+		GFF3560	0.82	+0.3
3,606,121	+		GFF3560	0.84	-0.3
3,606,123	+		GFF3560	0.84	+0.1
3,606,128	+		GFF3560	0.85	+0.7
3,606,128	+		GFF3560	0.85	+0.9
3,606,128	+		GFF3560	0.85	+0.3
3,606,128	+		GFF3560	0.85	-1.7
3,606,128	+		GFF3560	0.85	+0.9
3,606,128	+		GFF3560	0.85	-0.1
3,606,128	+		GFF3560	0.85	-2.0
3,606,128	+		GFF3560	0.85	-0.6
3,606,128	+		GFF3560	0.85	+0.9
3,606,128	+		GFF3560	0.85	+1.0
3,606,128	+		GFF3560	0.85	-0.8
3,606,129	+		GFF3560	0.85	-1.2
3,606,131	-		GFF3560	0.85	-1.5
3,606,131	-		GFF3560	0.85	-0.8
3,606,136	+		GFF3560	0.86	-0.8
3,606,136	+		GFF3560	0.86	-0.2
3,606,136	+		GFF3560	0.86	-0.8
3,606,136	-		GFF3560	0.86	-1.6
3,606,136	-		GFF3560	0.86	-1.2
3,606,136	-		GFF3560	0.86	-0.0
3,606,136	-		GFF3560	0.86	-2.1
3,606,136	-		GFF3560	0.86	-1.5
3,606,136	-		GFF3560	0.86	+0.1
3,606,136	-		GFF3560	0.86	+0.7
3,606,136	-		GFF3560	0.86	-0.4
3,606,136	-		GFF3560	0.86	-2.2
3,606,137	+		GFF3560	0.86	-1.0
3,606,137	+		GFF3560	0.86	-1.2
3,606,164	-		GFF3560	0.89	-1.0
3,606,174	+		GFF3560	0.90	-2.2
3,606,179	+				+2.0
3,606,179	+				-1.3
3,606,179	+				+0.3
3,606,179	+				-2.2
3,606,184	+				-0.7
3,606,187	-				-2.2
3,606,187	-				-1.8
3,606,187	-				-1.4
3,606,187	-				-0.2
3,606,189	+				-0.6
3,606,189	+				-0.2
3,606,189	+				-1.4
3,606,194	+				-0.3
3,606,194	+				+1.0
3,606,197	+				+0.6
3,606,202	-				-0.2
3,606,210	-				+0.1
3,606,227	+				+0.2
3,606,227	+				-1.7
3,606,260	+				-1.2
3,606,371	+				-0.4
3,606,394	-				-0.2
3,606,394	-				+0.2
3,606,447	-		GFF3561	0.20	-1.6
3,606,449	-		GFF3561	0.21	-1.0
3,606,541	+		GFF3561	0.44	-1.1
3,606,550	+		GFF3561	0.46	-0.7
3,606,558	-		GFF3561	0.48	-1.6
3,606,566	+		GFF3561	0.50	-1.6
3,606,566	+		GFF3561	0.50	-1.5
3,606,574	-		GFF3561	0.52	+0.2
3,606,574	-		GFF3561	0.52	-1.0
3,606,574	-		GFF3561	0.52	+0.5
3,606,589	+		GFF3561	0.56	+0.0
3,606,590	+		GFF3561	0.56	+1.0
3,606,595	+		GFF3561	0.57	-2.0
3,606,598	-		GFF3561	0.58	+0.7
3,606,598	-		GFF3561	0.58	-1.4
3,606,598	-		GFF3561	0.58	+1.0
3,606,600	+		GFF3561	0.59	+0.9
3,606,600	+		GFF3561	0.59	-1.2
3,606,600	+		GFF3561	0.59	-0.8
3,606,608	-		GFF3561	0.61	-1.6
3,606,608	-		GFF3561	0.61	-0.8
3,606,646	-		GFF3561	0.70	-0.7
3,606,669	+		GFF3561	0.76	+0.1
3,606,675	-		GFF3561	0.77	-1.2
3,606,677	-		GFF3561	0.78	-2.3
3,606,702	-		GFF3561	0.84	-1.2
3,606,706	-		GFF3561	0.85	-2.5
3,606,706	-		GFF3561	0.85	-0.0
3,606,707	-		GFF3561	0.85	-1.2
3,606,797	+				-1.0
3,606,806	-		GFF3562	0.12	-1.3
3,606,814	+		GFF3562	0.14	-0.7
3,606,816	-		GFF3562	0.15	-0.2
3,606,822	-		GFF3562	0.17	+0.4
3,606,824	+		GFF3562	0.17	+0.9
3,606,824	+		GFF3562	0.17	+0.3
3,606,824	+		GFF3562	0.17	-1.0
3,606,824	+		GFF3562	0.17	+1.1
3,606,824	+		GFF3562	0.17	-0.2
3,606,825	+		GFF3562	0.18	+0.4
3,606,830	+		GFF3562	0.19	-0.0
3,606,830	+		GFF3562	0.19	+0.1
3,606,830	+		GFF3562	0.19	-0.4
3,606,830	+		GFF3562	0.19	-1.6
3,606,830	+		GFF3562	0.19	-0.9
3,606,833	-		GFF3562	0.20	-0.0
3,606,833	-		GFF3562	0.20	+0.0
3,606,833	-		GFF3562	0.20	-0.9
3,606,833	-		GFF3562	0.20	-0.2
3,606,833	-		GFF3562	0.20	-0.9
3,606,833	-		GFF3562	0.20	-0.4
3,606,838	+		GFF3562	0.21	-1.4
3,606,838	-		GFF3562	0.21	+1.1
3,606,838	-		GFF3562	0.21	+0.7
3,606,838	-		GFF3562	0.21	+0.2
3,606,838	-		GFF3562	0.21	-1.7
3,606,838	-		GFF3562	0.21	-0.5
3,606,896	+		GFF3562	0.38	+1.1
3,606,897	-		GFF3562	0.39	+0.5
3,606,900	-		GFF3562	0.39	-2.1
3,606,924	+		GFF3562	0.46	+1.1
3,606,961	+		GFF3562	0.57	-0.3
3,606,967	-		GFF3562	0.59	+0.6
3,606,971	+		GFF3562	0.60	+0.3
3,606,977	-		GFF3562	0.62	-0.8
3,606,979	-		GFF3562	0.62	+1.3
3,606,979	-		GFF3562	0.62	-1.3
3,606,979	-		GFF3562	0.62	-0.6
3,607,002	+		GFF3562	0.69	-0.2
3,607,027	+		GFF3562	0.76	-0.4
3,607,035	-		GFF3562	0.79	-1.8
3,607,045	+		GFF3562	0.81	+0.0
3,607,053	+		GFF3562	0.84	-1.6
3,607,053	+		GFF3562	0.84	-2.3
3,607,053	+		GFF3562	0.84	-0.5
3,607,053	+		GFF3562	0.84	-0.4
3,607,053	+		GFF3562	0.84	+0.3
3,607,053	+		GFF3562	0.84	-1.0
3,607,053	-		GFF3562	0.84	-0.8
3,607,053	-		GFF3562	0.84	-1.2
3,607,053	-		GFF3562	0.84	-0.2
3,607,053	-		GFF3562	0.84	+1.0
3,607,063	-		GFF3562	0.87	-0.7
3,607,093	+				+0.3
3,607,101	-				+0.9
3,607,101	-				+0.8
3,607,101	-				-0.2
3,607,101	-				-0.3
3,607,124	-				-2.0
3,607,130	+				-1.0
3,607,132	+		GFF3563	0.10	-1.8
3,607,138	-		GFF3563	0.12	-2.9
3,607,144	-		GFF3563	0.14	-0.4
3,607,144	-		GFF3563	0.14	-0.3
3,607,190	+		GFF3563	0.29	-0.0
3,607,190	+		GFF3563	0.29	+1.2
3,607,195	+		GFF3563	0.31	+0.7
3,607,195	+		GFF3563	0.31	-1.5
3,607,197	-		GFF3563	0.31	+1.9
3,607,198	-		GFF3563	0.32	-0.8
3,607,198	-		GFF3563	0.32	-0.9
3,607,203	-		GFF3563	0.33	-0.7
3,607,208	+		GFF3563	0.35	-1.2
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3,607,281	-		GFF3563	0.59	-1.2
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3,607,302	+		GFF3563	0.66	-1.6
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3,607,364	+		GFF3563	0.86	-1.9
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3,607,400	+				-0.0
3,607,401	+				-0.3
3,607,446	-				-1.8
3,607,451	+				+1.1
3,607,451	+				-1.9
3,607,459	-				-1.7
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3,607,570	-		GFF3564	0.36	-2.6
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