Strain Fitness in Sphingobium sp. HT1-2 around GFF3540

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,586,701	+		GFF3538	0.34	-2.0
3,586,708	+		GFF3538	0.35	-3.0
3,586,711	-		GFF3538	0.36	-2.6
3,586,718	-		GFF3538	0.37	-2.2
3,586,755	+		GFF3538	0.41	-1.5
3,586,845	+		GFF3538	0.53	-2.1
3,586,845	+		GFF3538	0.53	-2.1
3,586,845	+		GFF3538	0.53	-1.5
3,586,845	+		GFF3538	0.53	-2.2
3,586,845	+		GFF3538	0.53	-2.4
3,586,845	+		GFF3538	0.53	-2.0
3,586,848	-		GFF3538	0.53	-2.1
3,586,853	-		GFF3538	0.54	-2.2
3,586,853	-		GFF3538	0.54	-2.6
3,586,853	-		GFF3538	0.54	+0.5
3,586,883	+		GFF3538	0.57	-1.2
3,586,889	+		GFF3538	0.58	-1.3
3,586,896	-		GFF3538	0.59	-2.1
3,586,900	-		GFF3538	0.60	-2.1
3,586,903	+		GFF3538	0.60	-4.6
3,586,913	+		GFF3538	0.61	-2.2
3,586,913	+		GFF3538	0.61	-1.9
3,586,913	+		GFF3538	0.61	-3.1
3,586,913	+		GFF3538	0.61	+0.6
3,586,917	-		GFF3538	0.62	-2.3
3,586,918	+		GFF3538	0.62	-1.8
3,586,921	-		GFF3538	0.62	-3.0
3,586,921	-		GFF3538	0.62	-0.7
3,586,921	-		GFF3538	0.62	-1.3
3,586,921	-		GFF3538	0.62	-1.7
3,586,922	-		GFF3538	0.62	-3.0
3,586,928	+		GFF3538	0.63	-2.0
3,586,935	+		GFF3538	0.64	-1.7
3,586,935	+		GFF3538	0.64	-3.2
3,586,935	-		GFF3538	0.64	-2.0
3,586,943	-		GFF3538	0.65	-3.9
3,586,943	-		GFF3538	0.65	-2.4
3,586,946	+		GFF3538	0.65	-2.2
3,586,950	+		GFF3538	0.66	-4.1
3,586,954	-		GFF3538	0.66	-1.6
3,586,965	+		GFF3538	0.68	-2.2
3,586,980	+		GFF3538	0.70	-2.6
3,586,980	+		GFF3538	0.70	-3.1
3,586,980	+		GFF3538	0.70	-3.7
3,586,999	+		GFF3538	0.72	-2.8
3,586,999	+		GFF3538	0.72	-2.9
3,587,007	-		GFF3538	0.73	-2.2
3,587,038	+		GFF3538	0.77	-2.0
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-1.2
3,587,038	+		GFF3538	0.77	-2.3
3,587,038	+		GFF3538	0.77	-1.5
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-2.4
3,587,038	+		GFF3538	0.77	-2.7
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-2.9
3,587,038	+		GFF3538	0.77	-1.2
3,587,038	+		GFF3538	0.77	-1.4
3,587,038	+		GFF3538	0.77	-1.2
3,587,038	+		GFF3538	0.77	-2.6
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-4.5
3,587,038	+		GFF3538	0.77	-2.6
3,587,038	+		GFF3538	0.77	-1.9
3,587,038	+		GFF3538	0.77	-2.4
3,587,038	+		GFF3538	0.77	-1.1
3,587,038	+		GFF3538	0.77	-2.1
3,587,038	+		GFF3538	0.77	-2.9
3,587,038	+		GFF3538	0.77	-2.4
3,587,038	+		GFF3538	0.77	-2.9
3,587,038	+		GFF3538	0.77	-1.5
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-2.0
3,587,038	+		GFF3538	0.77	-3.5
3,587,038	+		GFF3538	0.77	-0.7
3,587,038	+		GFF3538	0.77	-2.6
3,587,038	+		GFF3538	0.77	-2.8
3,587,038	+		GFF3538	0.77	-2.2
3,587,038	+		GFF3538	0.77	-2.4
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-2.2
3,587,046	-		GFF3538	0.78	-1.5
3,587,046	-		GFF3538	0.78	-2.0
3,587,046	-		GFF3538	0.78	-2.9
3,587,046	-		GFF3538	0.78	-3.4
3,587,046	-		GFF3538	0.78	-2.6
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-2.1
3,587,046	-		GFF3538	0.78	-1.5
3,587,046	-		GFF3538	0.78	-0.1
3,587,046	-		GFF3538	0.78	-2.5
3,587,046	-		GFF3538	0.78	-1.2
3,587,046	-		GFF3538	0.78	-1.8
3,587,046	-		GFF3538	0.78	-0.9
3,587,046	-		GFF3538	0.78	-2.3
3,587,046	-		GFF3538	0.78	-2.9
3,587,046	-		GFF3538	0.78	-1.2
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-1.6
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-3.2
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-1.6
3,587,046	-		GFF3538	0.78	-3.6
3,587,046	-		GFF3538	0.78	-2.8
3,587,046	-		GFF3538	0.78	-2.1
3,587,046	-		GFF3538	0.78	-2.1
3,587,046	-		GFF3538	0.78	-2.5
3,587,046	-		GFF3538	0.78	-3.0
3,587,046	-		GFF3538	0.78	-3.3
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-1.6
3,587,046	-		GFF3538	0.78	-2.0
3,587,046	-		GFF3538	0.78	-1.2
3,587,056	-		GFF3538	0.79	-0.6
3,587,066	+		GFF3538	0.81	-0.5
3,587,066	+		GFF3538	0.81	-2.2
3,587,066	-		GFF3538	0.81	-1.6
3,587,066	-		GFF3538	0.81	-2.2
3,587,075	-		GFF3538	0.82	-1.2
3,587,112	-		GFF3538	0.86	-1.8
3,587,128	+		GFF3538	0.88	-1.0
3,587,133	+		GFF3538	0.89	-2.8
3,587,143	+				-1.9
3,587,143	+				-2.2
3,587,143	+				-3.0
3,587,151	-				-2.6
3,587,160	+				-3.3
3,587,163	-				-2.6
3,587,163	-				-3.3
3,587,174	+				-1.9
3,587,201	-				-0.9
3,587,202	+				+0.3
3,587,204	+				-0.5
3,587,212	-				-0.0
3,587,222	+				-0.1
3,587,222	+				+0.2
3,587,223	+				-0.3
3,587,223	+				-0.5
3,587,223	+				+0.7
3,587,231	-				-1.1
3,587,231	-				+0.4
3,587,250	-				+1.0
3,587,261	+				+1.2
3,587,261	+				+0.0
3,587,267	+		GFF3539	0.10	+0.3
3,587,278	+		GFF3539	0.13	+0.0
3,587,278	+		GFF3539	0.13	+0.0
3,587,278	+		GFF3539	0.13	-0.0
3,587,286	-		GFF3539	0.14	+0.4
3,587,286	-		GFF3539	0.14	-0.3
3,587,303	-		GFF3539	0.18	-2.3
3,587,314	+		GFF3539	0.20	+0.2
3,587,322	-		GFF3539	0.22	+0.1
3,587,349	+		GFF3539	0.27	+0.3
3,587,359	+		GFF3539	0.29	-0.1
3,587,367	-		GFF3539	0.31	-1.2
3,587,374	+		GFF3539	0.33	-2.0
3,587,383	-		GFF3539	0.34	-0.6
3,587,383	-		GFF3539	0.34	+0.7
3,587,408	-		GFF3539	0.40	+0.2
3,587,421	+		GFF3539	0.42	-3.1
3,587,421	+		GFF3539	0.42	-0.2
3,587,427	+		GFF3539	0.43	+0.5
3,587,429	-		GFF3539	0.44	-0.2
3,587,429	-		GFF3539	0.44	-1.7
3,587,429	-		GFF3539	0.44	-0.2
3,587,437	+		GFF3539	0.45	-2.0
3,587,453	+		GFF3539	0.49	+1.2
3,587,453	+		GFF3539	0.49	-0.2
3,587,469	+		GFF3539	0.52	-2.8
3,587,475	+		GFF3539	0.53	-0.6
3,587,475	+		GFF3539	0.53	-0.3
3,587,475	+		GFF3539	0.53	-1.6
3,587,475	+		GFF3539	0.53	-1.8
3,587,475	+		GFF3539	0.53	+0.8
3,587,475	+		GFF3539	0.53	-2.0
3,587,475	+		GFF3539	0.53	+0.3
3,587,477	-		GFF3539	0.54	+0.3
3,587,481	+		GFF3539	0.55	-0.4
3,587,483	-		GFF3539	0.55	+0.8
3,587,493	-		GFF3539	0.57	+0.5
3,587,498	-		GFF3539	0.58	-0.5
3,587,503	-		GFF3539	0.59	+0.4
3,587,504	-		GFF3539	0.59	-0.2
3,587,523	+		GFF3539	0.63	-0.2
3,587,528	+		GFF3539	0.64	+1.0
3,587,531	-		GFF3539	0.65	+0.8
3,587,531	-		GFF3539	0.65	+0.3
3,587,536	-		GFF3539	0.66	-1.0
3,587,536	-		GFF3539	0.66	-2.8
3,587,537	+		GFF3539	0.66	-1.0
3,587,541	-		GFF3539	0.67	+0.7
3,587,573	+		GFF3539	0.73	-1.4
3,587,585	+		GFF3539	0.76	-0.4
3,587,585	+		GFF3539	0.76	+0.4
3,587,585	+		GFF3539	0.76	+0.5
3,587,585	+		GFF3539	0.76	-2.4
3,587,596	+		GFF3539	0.78	-0.4
3,587,604	-		GFF3539	0.80	-0.1
3,587,608	+		GFF3539	0.81	-0.6
3,587,616	-		GFF3539	0.82	-0.1
3,587,676	-				-1.4
3,587,686	-				+1.8
3,587,688	+				+0.6
3,587,702	+				-0.5
3,587,735	+				-1.0
3,587,743	-				+1.7
3,587,743	-				-1.2
3,587,768	-				-0.9
3,587,806	+				+1.1
3,587,806	+				+1.1
3,587,806	+				-0.7
3,587,811	+				-2.0
3,587,814	-				-1.3
3,587,821	+		GFF3540	0.10	-0.1
3,587,829	-		GFF3540	0.11	-0.5
3,587,830	-		GFF3540	0.11	-0.6
3,587,832	+		GFF3540	0.11	+0.9
3,587,832	+		GFF3540	0.11	+0.4
3,587,832	+		GFF3540	0.11	-2.4
3,587,832	+		GFF3540	0.11	-0.5
3,587,832	+		GFF3540	0.11	-0.4
3,587,832	+		GFF3540	0.11	+1.1
3,587,832	+		GFF3540	0.11	-0.2
3,587,832	+		GFF3540	0.11	-1.1
3,587,832	+		GFF3540	0.11	+0.8
3,587,832	+		GFF3540	0.11	-0.4
3,587,832	+		GFF3540	0.11	-1.5
3,587,832	+		GFF3540	0.11	+0.5
3,587,840	-		GFF3540	0.12	-1.1
3,587,840	-		GFF3540	0.12	+0.1
3,587,840	-		GFF3540	0.12	-1.2
3,587,840	-		GFF3540	0.12	+1.3
3,587,840	-		GFF3540	0.12	-1.6
3,587,840	-		GFF3540	0.12	-0.3
3,587,840	-		GFF3540	0.12	+0.5
3,587,840	-		GFF3540	0.12	-0.9
3,587,840	-		GFF3540	0.12	-0.2
3,587,840	-		GFF3540	0.12	+0.8
3,587,840	-		GFF3540	0.12	-0.3
3,587,840	-		GFF3540	0.12	+0.4
3,587,840	-		GFF3540	0.12	+0.6
3,587,840	-		GFF3540	0.12	-0.8
3,587,840	-		GFF3540	0.12	+1.8
3,587,840	-		GFF3540	0.12	-0.0
3,587,840	-		GFF3540	0.12	+0.4
3,587,840	-		GFF3540	0.12	-0.2
3,587,840	-		GFF3540	0.12	-0.6
3,587,840	-		GFF3540	0.12	-1.2
3,587,854	+		GFF3540	0.13	-0.4
3,587,854	+		GFF3540	0.13	+0.5
3,587,859	+		GFF3540	0.14	-0.2
3,587,859	+		GFF3540	0.14	+0.1
3,587,859	+		GFF3540	0.14	-0.0
3,587,859	+		GFF3540	0.14	-0.4
3,587,859	+		GFF3540	0.14	-0.7
3,587,859	+		GFF3540	0.14	-0.0
3,587,859	+		GFF3540	0.14	-0.1
3,587,861	+		GFF3540	0.14	-1.9
3,587,867	-		GFF3540	0.14	-1.0
3,587,867	-		GFF3540	0.14	+1.0
3,587,867	-		GFF3540	0.14	+1.3
3,587,867	-		GFF3540	0.14	-1.6
3,587,867	-		GFF3540	0.14	-0.7
3,587,869	-		GFF3540	0.14	-0.5
3,587,869	-		GFF3540	0.14	-1.0
3,587,869	-		GFF3540	0.14	+0.3
3,587,876	+		GFF3540	0.15	+0.0
3,587,877	+		GFF3540	0.15	+0.8
3,587,885	+		GFF3540	0.16	+0.2
3,587,893	-		GFF3540	0.16	-1.6
3,587,900	-		GFF3540	0.17	+0.8
3,587,926	-		GFF3540	0.19	-1.4
3,587,938	-		GFF3540	0.20	-1.2
3,587,953	+		GFF3540	0.22	-1.6
3,587,953	+		GFF3540	0.22	-0.2
3,587,953	+		GFF3540	0.22	-1.8
3,587,961	-		GFF3540	0.22	+0.1
3,587,970	-		GFF3540	0.23	+0.5
3,587,996	+		GFF3540	0.25	-0.1
3,588,007	+		GFF3540	0.26	-1.6
3,588,015	-		GFF3540	0.27	-0.8
3,588,064	+		GFF3540	0.31	-0.8
3,588,098	+		GFF3540	0.34	+0.8
3,588,121	+		GFF3540	0.36	+0.6
3,588,121	+		GFF3540	0.36	+0.3
3,588,121	+		GFF3540	0.36	+0.4
3,588,121	+		GFF3540	0.36	-1.2
3,588,126	+		GFF3540	0.36	-0.4
3,588,126	+		GFF3540	0.36	-1.2
3,588,129	-		GFF3540	0.36	+1.4
3,588,129	-		GFF3540	0.36	-0.9
3,588,129	-		GFF3540	0.36	+0.5
3,588,129	-		GFF3540	0.36	-0.2
3,588,129	-		GFF3540	0.36	+0.2
3,588,134	-		GFF3540	0.37	-0.1
3,588,134	-		GFF3540	0.37	-0.0
3,588,149	+		GFF3540	0.38	-0.3
3,588,149	+		GFF3540	0.38	+0.4
3,588,152	-		GFF3540	0.38	-0.8
3,588,157	-		GFF3540	0.39	+0.9
3,588,166	-		GFF3540	0.39	+0.4
3,588,192	-		GFF3540	0.42	-0.5
3,588,192	-		GFF3540	0.42	-0.0
3,588,194	-		GFF3540	0.42	+0.0
3,588,201	-		GFF3540	0.42	+0.3
3,588,211	-		GFF3540	0.43	+0.7
3,588,225	+		GFF3540	0.44	-0.8
3,588,225	+		GFF3540	0.44	-1.6
3,588,233	-		GFF3540	0.45	+1.1
3,588,244	-		GFF3540	0.46	+0.1
3,588,244	-		GFF3540	0.46	-1.2
3,588,286	-		GFF3540	0.50	-2.0
3,588,290	-		GFF3540	0.50	-0.4
3,588,304	-		GFF3540	0.51	-0.2
3,588,322	+		GFF3540	0.53	-0.4
3,588,322	+		GFF3540	0.53	+0.8
3,588,322	+		GFF3540	0.53	-0.1
3,588,322	+		GFF3540	0.53	-0.1
3,588,325	-		GFF3540	0.53	+0.0
3,588,327	+		GFF3540	0.53	-1.4
3,588,327	+		GFF3540	0.53	-1.0
3,588,327	+		GFF3540	0.53	+0.5
3,588,330	-		GFF3540	0.53	-0.3
3,588,330	-		GFF3540	0.53	-0.3
3,588,330	-		GFF3540	0.53	-1.6
3,588,330	-		GFF3540	0.53	-0.4
3,588,335	-		GFF3540	0.54	+0.4
3,588,335	-		GFF3540	0.54	+1.2
3,588,353	-		GFF3540	0.55	-1.4
3,588,386	+		GFF3540	0.58	+0.7
3,588,425	-		GFF3540	0.61	-0.6
3,588,446	+		GFF3540	0.63	-0.6
3,588,460	-		GFF3540	0.64	+0.9
3,588,526	+		GFF3540	0.70	-2.0
3,588,526	+		GFF3540	0.70	-2.0
3,588,569	-		GFF3540	0.74	-1.3
3,588,583	+		GFF3540	0.75	+0.2
3,588,599	+		GFF3540	0.76	+0.6
3,588,607	+		GFF3540	0.77	-0.8
3,588,612	+		GFF3540	0.77	-0.4
3,588,615	-		GFF3540	0.77	+0.3
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