Strain Fitness in Sphingobium sp. HT1-2 around GFF3495

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,530,841	-				+0.4
3,530,843	+				-1.9
3,530,843	+				-0.8
3,530,843	+				-1.7
3,530,843	+				+0.5
3,530,843	+				+0.0
3,530,843	+				-0.6
3,530,851	-				-0.1
3,530,851	-				+0.4
3,530,851	-				-0.3
3,530,853	+				+0.6
3,530,853	+				-2.0
3,530,853	+				-0.6
3,530,853	+				-0.4
3,530,853	+				-1.4
3,530,853	+				-0.3
3,530,853	+				-0.0
3,530,861	-				+0.2
3,530,861	-				-1.3
3,530,861	-				-1.2
3,530,861	-				-0.4
3,530,861	-				-1.5
3,530,861	-				+0.0
3,530,861	-				-0.7
3,530,863	+				-0.9
3,530,883	-				-1.9
3,530,885	-				-0.3
3,530,888	-				+1.0
3,530,888	-				-0.4
3,530,904	+				-1.3
3,530,974	+		GFF3494	0.10	+0.1
3,531,022	+		GFF3494	0.15	-1.5
3,531,035	-		GFF3494	0.16	-0.4
3,531,036	+		GFF3494	0.16	+0.9
3,531,038	+		GFF3494	0.16	+0.2
3,531,040	-		GFF3494	0.17	-0.7
3,531,043	+		GFF3494	0.17	-4.0
3,531,046	-		GFF3494	0.17	-0.2
3,531,051	-		GFF3494	0.18	-2.2
3,531,053	+		GFF3494	0.18	+0.5
3,531,053	+		GFF3494	0.18	-0.4
3,531,053	+		GFF3494	0.18	-0.3
3,531,056	-		GFF3494	0.18	-1.6
3,531,056	-		GFF3494	0.18	-1.2
3,531,061	-		GFF3494	0.19	-1.5
3,531,061	-		GFF3494	0.19	-0.3
3,531,069	+		GFF3494	0.20	-1.5
3,531,069	+		GFF3494	0.20	+0.6
3,531,069	+		GFF3494	0.20	-0.8
3,531,077	-		GFF3494	0.20	+0.3
3,531,077	-		GFF3494	0.20	-2.7
3,531,106	+		GFF3494	0.23	-1.4
3,531,106	+		GFF3494	0.23	-0.5
3,531,106	+		GFF3494	0.23	-0.1
3,531,114	-		GFF3494	0.24	-1.3
3,531,114	-		GFF3494	0.24	-1.6
3,531,114	-		GFF3494	0.24	+0.0
3,531,143	+		GFF3494	0.27	-1.4
3,531,202	+		GFF3494	0.33	-0.2
3,531,220	-		GFF3494	0.34	+0.8
3,531,227	-		GFF3494	0.35	-0.2
3,531,244	-		GFF3494	0.37	-0.3
3,531,261	-		GFF3494	0.38	+0.4
3,531,283	-		GFF3494	0.40	-0.8
3,531,285	-		GFF3494	0.41	-1.5
3,531,306	+		GFF3494	0.43	-0.1
3,531,319	-		GFF3494	0.44	-0.6
3,531,344	+		GFF3494	0.46	+0.8
3,531,354	+		GFF3494	0.47	-0.6
3,531,354	+		GFF3494	0.47	+0.4
3,531,362	-		GFF3494	0.48	-2.0
3,531,369	-		GFF3494	0.49	-0.8
3,531,377	+		GFF3494	0.50	+0.1
3,531,393	-		GFF3494	0.51	+0.7
3,531,395	+		GFF3494	0.51	-0.3
3,531,399	+		GFF3494	0.52	+0.7
3,531,407	+		GFF3494	0.53	-0.9
3,531,409	+		GFF3494	0.53	-0.2
3,531,444	+		GFF3494	0.56	-0.3
3,531,463	-		GFF3494	0.58	-0.7
3,531,478	+		GFF3494	0.60	-1.4
3,531,478	+		GFF3494	0.60	-0.7
3,531,478	+		GFF3494	0.60	+1.3
3,531,478	+		GFF3494	0.60	-0.1
3,531,478	+		GFF3494	0.60	-2.7
3,531,486	-		GFF3494	0.60	-1.5
3,531,486	-		GFF3494	0.60	-2.1
3,531,486	-		GFF3494	0.60	+0.3
3,531,499	+		GFF3494	0.62	-1.1
3,531,511	+		GFF3494	0.63	-0.2
3,531,538	+		GFF3494	0.65	-2.6
3,531,538	+		GFF3494	0.65	-1.5
3,531,538	+		GFF3494	0.65	+1.2
3,531,538	+		GFF3494	0.65	+0.7
3,531,538	+		GFF3494	0.65	-0.2
3,531,538	+		GFF3494	0.65	-0.4
3,531,541	-		GFF3494	0.66	-0.8
3,531,546	-		GFF3494	0.66	+0.3
3,531,546	-		GFF3494	0.66	-1.3
3,531,587	+		GFF3494	0.70	-1.2
3,531,587	+		GFF3494	0.70	-0.5
3,531,587	+		GFF3494	0.70	-1.6
3,531,587	+		GFF3494	0.70	+0.5
3,531,604	+		GFF3494	0.72	-0.1
3,531,605	-		GFF3494	0.72	-0.9
3,531,618	+		GFF3494	0.73	-1.9
3,531,618	+		GFF3494	0.73	+0.0
3,531,618	+		GFF3494	0.73	-0.4
3,531,618	+		GFF3494	0.73	+1.1
3,531,618	+		GFF3494	0.73	-0.2
3,531,618	+		GFF3494	0.73	-0.1
3,531,618	+		GFF3494	0.73	-1.6
3,531,618	+		GFF3494	0.73	-0.2
3,531,618	+		GFF3494	0.73	-0.2
3,531,626	-		GFF3494	0.74	-1.2
3,531,626	-		GFF3494	0.74	+1.6
3,531,626	-		GFF3494	0.74	-0.8
3,531,626	-		GFF3494	0.74	+1.1
3,531,628	-		GFF3494	0.74	-0.2
3,531,630	+		GFF3494	0.75	-0.2
3,531,648	-		GFF3494	0.76	+0.6
3,531,661	+		GFF3494	0.78	+0.1
3,531,690	-		GFF3494	0.80	-0.3
3,531,695	+		GFF3494	0.81	-0.5
3,531,704	-		GFF3494	0.82	-0.8
3,531,763	-		GFF3494	0.88	-0.6
3,531,773	-		GFF3494	0.89	-1.7
3,531,773	-		GFF3494	0.89	-0.5
3,531,773	-		GFF3494	0.89	-0.3
3,531,773	-		GFF3494	0.89	-0.2
3,531,821	+				-1.4
3,531,826	+				+0.8
3,531,834	-				+0.8
3,531,834	-				-0.6
3,531,834	-				-0.5
3,531,836	-				+0.3
3,531,841	+				-1.4
3,531,849	-				-1.3
3,531,875	+				-0.9
3,531,875	+				-0.0
3,531,878	+				+0.5
3,531,880	+				-1.5
3,531,880	+				+0.5
3,531,915	+		GFF3495	0.10	-0.1
3,531,928	-		GFF3495	0.12	-1.6
3,531,980	+		GFF3495	0.19	+0.9
3,531,980	+		GFF3495	0.19	-1.0
3,531,983	-		GFF3495	0.19	-1.4
3,531,988	-		GFF3495	0.20	-1.0
3,531,988	-		GFF3495	0.20	-1.3
3,531,995	-		GFF3495	0.21	-0.7
3,531,995	-		GFF3495	0.21	+0.0
3,531,995	-		GFF3495	0.21	+0.3
3,532,005	+		GFF3495	0.22	-0.9
3,532,010	+		GFF3495	0.23	-0.6
3,532,015	+		GFF3495	0.23	+0.0
3,532,015	+		GFF3495	0.23	-1.1
3,532,015	+		GFF3495	0.23	-1.4
3,532,015	+		GFF3495	0.23	+0.9
3,532,015	+		GFF3495	0.23	-0.6
3,532,015	+		GFF3495	0.23	+0.1
3,532,015	+		GFF3495	0.23	-0.2
3,532,023	-		GFF3495	0.25	-0.6
3,532,023	-		GFF3495	0.25	-1.0
3,532,023	-		GFF3495	0.25	+1.3
3,532,025	+		GFF3495	0.25	+1.8
3,532,025	+		GFF3495	0.25	-0.1
3,532,033	-		GFF3495	0.26	-1.1
3,532,033	-		GFF3495	0.26	+1.3
3,532,049	+		GFF3495	0.28	-0.1
3,532,059	+		GFF3495	0.29	-2.4
3,532,075	+		GFF3495	0.32	+0.7
3,532,083	-		GFF3495	0.33	+0.4
3,532,084	+		GFF3495	0.33	-0.9
3,532,092	-		GFF3495	0.34	-0.9
3,532,099	+		GFF3495	0.35	-0.4
3,532,149	+		GFF3495	0.42	-1.2
3,532,149	+		GFF3495	0.42	-1.3
3,532,157	-		GFF3495	0.43	-1.6
3,532,157	-		GFF3495	0.43	-2.0
3,532,157	-		GFF3495	0.43	-2.4
3,532,168	-		GFF3495	0.44	-1.4
3,532,170	+		GFF3495	0.44	+0.4
3,532,173	+		GFF3495	0.45	-0.8
3,532,179	+		GFF3495	0.46	-0.2
3,532,192	-		GFF3495	0.47	-0.9
3,532,208	+		GFF3495	0.50	+0.4
3,532,224	+		GFF3495	0.52	+1.3
3,532,232	+		GFF3495	0.53	-0.5
3,532,238	-		GFF3495	0.54	+1.0
3,532,238	-		GFF3495	0.54	-0.7
3,532,238	-		GFF3495	0.54	-1.6
3,532,238	-		GFF3495	0.54	-0.6
3,532,240	-		GFF3495	0.54	-0.4
3,532,240	-		GFF3495	0.54	+0.5
3,532,240	-		GFF3495	0.54	+0.5
3,532,240	-		GFF3495	0.54	-0.3
3,532,240	-		GFF3495	0.54	+1.3
3,532,254	-		GFF3495	0.56	-1.4
3,532,264	+		GFF3495	0.57	+0.0
3,532,272	-		GFF3495	0.58	+0.7
3,532,277	+		GFF3495	0.59	-0.0
3,532,277	-		GFF3495	0.59	-0.6
3,532,285	-		GFF3495	0.60	-1.2
3,532,285	-		GFF3495	0.60	+0.4
3,532,322	+		GFF3495	0.65	-0.2
3,532,322	+		GFF3495	0.65	+0.9
3,532,332	+		GFF3495	0.66	-0.8
3,532,363	+		GFF3495	0.70	-0.4
3,532,375	-		GFF3495	0.72	+0.2
3,532,384	+		GFF3495	0.73	-0.2
3,532,392	-		GFF3495	0.74	-1.3
3,532,398	+		GFF3495	0.75	+1.0
3,532,413	+		GFF3495	0.77	-0.1
3,532,413	+		GFF3495	0.77	-0.3
3,532,413	+		GFF3495	0.77	-0.2
3,532,413	+		GFF3495	0.77	-1.0
3,532,413	+		GFF3495	0.77	-0.1
3,532,413	+		GFF3495	0.77	-0.6
3,532,413	+		GFF3495	0.77	+0.8
3,532,413	+		GFF3495	0.77	-0.6
3,532,413	+		GFF3495	0.77	-0.5
3,532,413	+		GFF3495	0.77	-0.5
3,532,413	+		GFF3495	0.77	+0.2
3,532,413	+		GFF3495	0.77	-2.0
3,532,413	+		GFF3495	0.77	+0.2
3,532,413	+		GFF3495	0.77	-0.9
3,532,413	+		GFF3495	0.77	-1.4
3,532,413	+		GFF3495	0.77	-1.0
3,532,413	+		GFF3495	0.77	-1.6
3,532,413	+		GFF3495	0.77	-1.2
3,532,413	+		GFF3495	0.77	-1.3
3,532,413	+		GFF3495	0.77	-1.5
3,532,413	+		GFF3495	0.77	+0.5
3,532,421	-		GFF3495	0.78	+0.5
3,532,421	-		GFF3495	0.78	-0.8
3,532,421	-		GFF3495	0.78	+0.3
3,532,421	-		GFF3495	0.78	-1.3
3,532,421	-		GFF3495	0.78	-0.2
3,532,421	-		GFF3495	0.78	-0.3
3,532,421	-		GFF3495	0.78	-0.2
3,532,421	-		GFF3495	0.78	+0.2
3,532,421	-		GFF3495	0.78	-1.2
3,532,421	-		GFF3495	0.78	-0.0
3,532,421	-		GFF3495	0.78	-0.4
3,532,421	-		GFF3495	0.78	+1.8
3,532,421	-		GFF3495	0.78	+0.3
3,532,421	-		GFF3495	0.78	-0.7
3,532,421	-		GFF3495	0.78	-0.8
3,532,421	-		GFF3495	0.78	-0.6
3,532,421	-		GFF3495	0.78	-0.6
3,532,421	-		GFF3495	0.78	+0.3
3,532,421	-		GFF3495	0.78	-0.8
3,532,421	-		GFF3495	0.78	+0.8
3,532,421	-		GFF3495	0.78	-1.1
3,532,421	-		GFF3495	0.78	+0.7
3,532,421	-		GFF3495	0.78	-0.3
3,532,421	-		GFF3495	0.78	+1.1
3,532,421	-		GFF3495	0.78	-0.9
3,532,421	-		GFF3495	0.78	-0.2
3,532,421	-		GFF3495	0.78	-0.6
3,532,421	-		GFF3495	0.78	+0.1
3,532,421	-		GFF3495	0.78	-0.0
3,532,421	-		GFF3495	0.78	-0.1
3,532,421	-		GFF3495	0.78	-2.2
3,532,421	-		GFF3495	0.78	+0.5
3,532,435	+		GFF3495	0.80	+1.7
3,532,435	+		GFF3495	0.80	-0.5
3,532,435	+		GFF3495	0.80	+1.2
3,532,435	+		GFF3495	0.80	-0.5
3,532,464	+		GFF3495	0.84	-0.8
3,532,464	-		GFF3495	0.84	-0.2
3,532,469	-		GFF3495	0.85	-2.0
3,532,512	+				-0.2
3,532,522	+				-0.4
3,532,534	+				-0.7
3,532,534	+				-0.5
3,532,534	+				-1.0
3,532,542	-				-1.7
3,532,542	-				-1.1
3,532,561	+				-0.9
3,532,789	+				-1.0
3,532,795	+				-0.0
3,532,805	-				-2.3
3,532,805	-				-0.2
3,532,805	-				+0.3
3,532,847	+				-2.1
3,532,847	+				-0.0
3,532,852	+				-1.4
3,532,855	-				+0.7
3,532,860	-				-1.6
3,532,907	-				+0.8
3,532,909	-				-0.2
3,532,911	+				-0.7
3,532,926	+				+0.6
3,532,935	+				-0.2
3,532,940	+				-2.0
3,532,953	+				+0.7
3,532,961	-				-0.9
3,532,961	-				+0.4
3,532,961	-				+0.8
3,532,965	+				-1.3
3,532,965	+				+0.0
3,532,970	+				+0.8
3,532,970	+				+0.5
3,532,970	+				-0.0
3,532,970	+				-1.6
3,532,970	+				-0.3
3,532,973	-				-0.2
3,532,973	-				-0.3
3,532,973	-				+0.6
3,532,973	-				+0.5
3,532,973	-				-0.3
3,532,978	-				-0.4
3,532,978	-				+0.0
3,532,978	-				-1.9
3,532,978	-				-2.4
3,533,051	+				+0.0
3,533,051	+				-0.0
3,533,083	+				-2.7
3,533,083	+				+0.2
3,533,091	-				-0.8
3,533,102	+				+0.1
3,533,102	+				-1.7
3,533,110	-				-0.9
3,533,110	-				-1.3
3,533,152	-				+1.1
3,533,191	+		GFF3496	0.11	+1.2
3,533,199	-		GFF3496	0.11	-0.0
3,533,224	+		GFF3496	0.12	-0.6
3,533,224	+		GFF3496	0.12	-0.8
3,533,224	+		GFF3496	0.12	-1.2
3,533,224	+		GFF3496	0.12	-0.5
3,533,224	+		GFF3496	0.12	-0.9
3,533,224	+		GFF3496	0.12	-0.1
3,533,224	+		GFF3496	0.12	+0.1
3,533,224	+		GFF3496	0.12	-0.2
3,533,224	+		GFF3496	0.12	-0.7
3,533,224	+		GFF3496	0.12	-0.2
3,533,224	+		GFF3496	0.12	+0.2
3,533,224	+		GFF3496	0.12	+0.6
3,533,226	-		GFF3496	0.12	-0.1
3,533,232	-		GFF3496	0.12	+0.4
3,533,232	-		GFF3496	0.12	-0.8
3,533,234	+		GFF3496	0.12	-0.7
3,533,235	+		GFF3496	0.12	+1.1
3,533,237	-		GFF3496	0.12	-0.3
3,533,237	-		GFF3496	0.12	+0.0
3,533,263	+		GFF3496	0.13	-0.3
3,533,263	+		GFF3496	0.13	-0.2
3,533,271	-		GFF3496	0.13	-0.6
3,533,282	+		GFF3496	0.14	-0.7
3,533,282	+		GFF3496	0.14	+0.3
3,533,282	+		GFF3496	0.14	+0.4
3,533,290	-		GFF3496	0.14	-0.1
3,533,290	-		GFF3496	0.14	-0.2
3,533,290	-		GFF3496	0.14	+2.0
3,533,292	+		GFF3496	0.14	-0.2
3,533,292	+		GFF3496	0.14	-0.4
3,533,292	+		GFF3496	0.14	+0.4
3,533,298	-		GFF3496	0.14	-0.7
3,533,300	-		GFF3496	0.14	+0.8
3,533,301	+		GFF3496	0.14	+0.5
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