Strain Fitness in Sphingobium sp. HT1-2 around GFF3492

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,527,490	+		GFF3490	0.75	-0.3
3,527,490	-		GFF3490	0.75	+0.2
3,527,490	-		GFF3490	0.75	-0.7
3,527,498	-		GFF3490	0.76	-1.0
3,527,498	-		GFF3490	0.76	+1.2
3,527,499	-		GFF3490	0.76	-1.1
3,527,505	-		GFF3490	0.77	+0.7
3,527,509	-		GFF3490	0.77	-1.3
3,527,520	-		GFF3490	0.78	-1.5
3,527,536	+		GFF3490	0.80	+0.3
3,527,536	+		GFF3490	0.80	+0.6
3,527,536	+		GFF3490	0.80	-1.1
3,527,539	-		GFF3490	0.80	-0.0
3,527,544	-		GFF3490	0.80	+0.3
3,527,544	-		GFF3490	0.80	+0.6
3,527,544	-		GFF3490	0.80	-0.9
3,527,589	+		GFF3490	0.85	+0.6
3,527,589	+		GFF3490	0.85	+0.6
3,527,589	+		GFF3490	0.85	-1.0
3,527,589	+		GFF3490	0.85	-1.3
3,527,589	+		GFF3490	0.85	-0.8
3,527,589	+		GFF3490	0.85	+0.9
3,527,589	+		GFF3490	0.85	+0.4
3,527,589	+		GFF3490	0.85	-1.0
3,527,592	-		GFF3490	0.85	-0.7
3,527,597	-		GFF3490	0.86	+0.2
3,527,597	-		GFF3490	0.86	+0.7
3,527,597	-		GFF3490	0.86	-1.6
3,527,597	-		GFF3490	0.86	-0.1
3,527,597	-		GFF3490	0.86	+0.1
3,527,597	-		GFF3490	0.86	+1.1
3,527,597	-		GFF3490	0.86	+0.1
3,527,597	-		GFF3490	0.86	-1.3
3,527,632	+		GFF3490	0.89	-0.1
3,527,642	+				-0.3
3,527,650	-				-0.2
3,527,651	+				-1.0
3,527,656	+				+1.1
3,527,656	+				-0.3
3,527,668	+				-0.1
3,527,670	+				+0.1
3,527,675	+				-1.9
3,527,682	-				+0.3
3,527,735	+				-0.8
3,527,735	+				-0.1
3,527,738	-				+1.7
3,527,738	-				-1.3
3,527,738	-				+0.6
3,527,738	-				+0.3
3,527,743	-				-0.6
3,527,743	-				+0.4
3,527,743	-				-1.0
3,527,743	-				-0.8
3,527,743	-				-0.1
3,527,743	-				-0.2
3,527,743	-				+1.0
3,527,768	+				-0.8
3,527,768	+				-3.0
3,527,768	+				-0.6
3,527,775	+				-0.5
3,527,775	+				-1.6
3,527,775	+				-1.1
3,527,776	-				+0.4
3,527,776	-				-0.8
3,527,783	-				-0.2
3,527,784	-				+0.5
3,527,815	+				-0.6
3,527,823	+				-1.6
3,527,844	+				+0.3
3,527,849	+				-1.9
3,527,849	+				+0.6
3,527,849	+				+0.1
3,527,857	-				+0.6
3,527,857	-				+0.2
3,527,904	+		GFF3491	0.10	-0.2
3,527,912	-		GFF3491	0.12	-1.0
3,527,912	-		GFF3491	0.12	+0.6
3,527,916	-		GFF3491	0.13	-0.7
3,527,918	+		GFF3491	0.13	+1.4
3,527,927	+		GFF3491	0.15	-0.1
3,527,935	-		GFF3491	0.17	+0.3
3,527,959	+		GFF3491	0.21	-0.8
3,527,961	+		GFF3491	0.22	-1.5
3,527,961	+		GFF3491	0.22	-1.9
3,527,961	+		GFF3491	0.22	+0.2
3,527,961	+		GFF3491	0.22	-0.8
3,527,961	+		GFF3491	0.22	+0.6
3,527,961	+		GFF3491	0.22	-0.3
3,527,961	+		GFF3491	0.22	-1.0
3,527,961	+		GFF3491	0.22	-0.3
3,527,961	+		GFF3491	0.22	+0.4
3,527,961	+		GFF3491	0.22	-1.3
3,527,961	+		GFF3491	0.22	-0.8
3,527,961	+		GFF3491	0.22	+0.3
3,527,961	+		GFF3491	0.22	-0.9
3,527,961	+		GFF3491	0.22	-0.5
3,527,961	+		GFF3491	0.22	-1.4
3,527,961	+		GFF3491	0.22	-1.9
3,527,961	+		GFF3491	0.22	-1.5
3,527,966	+		GFF3491	0.23	-0.3
3,527,969	-		GFF3491	0.24	-1.7
3,527,969	-		GFF3491	0.24	+0.7
3,527,969	-		GFF3491	0.24	+0.3
3,527,969	-		GFF3491	0.24	-0.2
3,527,969	-		GFF3491	0.24	-0.9
3,527,969	-		GFF3491	0.24	-0.1
3,527,969	-		GFF3491	0.24	-0.8
3,527,969	-		GFF3491	0.24	-1.0
3,527,969	-		GFF3491	0.24	+0.0
3,527,969	-		GFF3491	0.24	-1.5
3,527,969	-		GFF3491	0.24	-2.4
3,527,988	+		GFF3491	0.27	-1.8
3,527,988	+		GFF3491	0.27	+1.4
3,527,993	+		GFF3491	0.28	-0.2
3,528,001	-		GFF3491	0.30	-1.7
3,528,003	+		GFF3491	0.30	-0.8
3,528,003	+		GFF3491	0.30	+0.9
3,528,011	+		GFF3491	0.32	-1.7
3,528,011	-		GFF3491	0.32	+0.4
3,528,011	-		GFF3491	0.32	-0.5
3,528,016	+		GFF3491	0.33	-0.2
3,528,018	+		GFF3491	0.34	-1.9
3,528,029	-		GFF3491	0.36	+0.4
3,528,030	+		GFF3491	0.36	-0.1
3,528,030	+		GFF3491	0.36	-0.3
3,528,030	+		GFF3491	0.36	-1.8
3,528,030	+		GFF3491	0.36	+1.0
3,528,030	+		GFF3491	0.36	+1.6
3,528,030	+		GFF3491	0.36	-0.3
3,528,030	+		GFF3491	0.36	+0.0
3,528,036	-		GFF3491	0.37	+0.2
3,528,036	-		GFF3491	0.37	-0.3
3,528,036	-		GFF3491	0.37	+1.9
3,528,038	-		GFF3491	0.38	-0.1
3,528,038	-		GFF3491	0.38	-1.3
3,528,038	-		GFF3491	0.38	-0.9
3,528,038	-		GFF3491	0.38	-0.3
3,528,038	-		GFF3491	0.38	-1.4
3,528,040	+		GFF3491	0.38	+0.0
3,528,054	+		GFF3491	0.41	+0.9
3,528,056	+		GFF3491	0.41	+1.0
3,528,062	-		GFF3491	0.43	+0.3
3,528,078	+		GFF3491	0.46	+1.4
3,528,086	-		GFF3491	0.47	-1.2
3,528,096	+		GFF3491	0.49	-1.7
3,528,096	+		GFF3491	0.49	-1.7
3,528,098	-		GFF3491	0.50	-0.5
3,528,133	+		GFF3491	0.57	-0.5
3,528,141	-		GFF3491	0.59	+0.8
3,528,150	+		GFF3491	0.61	+0.8
3,528,153	-		GFF3491	0.61	-0.4
3,528,158	-		GFF3491	0.62	-0.2
3,528,158	-		GFF3491	0.62	-0.4
3,528,159	+		GFF3491	0.62	+0.9
3,528,172	+		GFF3491	0.65	-1.3
3,528,172	+		GFF3491	0.65	+1.0
3,528,177	+		GFF3491	0.66	-0.8
3,528,177	+		GFF3491	0.66	-2.4
3,528,177	+		GFF3491	0.66	+0.2
3,528,177	+		GFF3491	0.66	-1.2
3,528,177	+		GFF3491	0.66	-2.1
3,528,180	-		GFF3491	0.67	-1.5
3,528,180	-		GFF3491	0.67	+0.8
3,528,185	-		GFF3491	0.68	-1.5
3,528,190	+		GFF3491	0.69	+0.6
3,528,198	-		GFF3491	0.70	+0.7
3,528,199	-		GFF3491	0.71	+1.9
3,528,226	-		GFF3491	0.76	-0.8
3,528,276	+		GFF3491	0.86	-1.4
3,528,282	-		GFF3491	0.88	-1.1
3,528,284	-		GFF3491	0.88	+0.4
3,528,284	-		GFF3491	0.88	-2.2
3,528,310	+				-2.0
3,528,310	-				+0.3
3,528,365	-				-1.7
3,528,365	-				-0.9
3,528,365	-				-1.6
3,528,365	-				-0.5
3,528,377	+				+0.3
3,528,395	+				-0.1
3,528,395	+				+0.3
3,528,395	+				+1.2
3,528,395	+				-0.1
3,528,395	+				+0.9
3,528,395	+				-1.1
3,528,395	+				+0.0
3,528,395	+				-2.9
3,528,397	+				-0.5
3,528,397	+				-0.5
3,528,401	-				+0.0
3,528,403	-				-2.4
3,528,403	-				-0.6
3,528,405	-				+0.4
3,528,405	-				-0.1
3,528,405	-				-0.7
3,528,405	-				+0.6
3,528,405	-				+0.8
3,528,441	+				-0.4
3,528,447	+				-0.6
3,528,449	-				-0.4
3,528,452	+				-0.2
3,528,455	-				-0.8
3,528,455	-				-1.6
3,528,455	-				-0.5
3,528,462	+				-2.0
3,528,465	-				+0.7
3,528,470	-				-0.6
3,528,484	-				+0.4
3,528,484	-				-1.9
3,528,491	-				-0.6
3,528,510	+				-1.5
3,528,530	+				-1.2
3,528,540	-				+0.0
3,528,569	+				-1.4
3,528,579	+				+0.7
3,528,587	+				-1.9
3,528,589	+				-1.4
3,528,621	-		GFF3492	0.11	-0.3
3,528,626	-		GFF3492	0.12	+1.2
3,528,652	+		GFF3492	0.14	-1.6
3,528,669	-		GFF3492	0.15	-0.5
3,528,673	+		GFF3492	0.15	+0.6
3,528,674	-		GFF3492	0.15	-0.2
3,528,707	+		GFF3492	0.18	-0.6
3,528,713	-		GFF3492	0.19	-0.1
3,528,713	-		GFF3492	0.19	-0.8
3,528,713	-		GFF3492	0.19	-0.8
3,528,719	-		GFF3492	0.19	+0.2
3,528,730	+		GFF3492	0.20	+1.1
3,528,738	-		GFF3492	0.21	-0.1
3,528,748	+		GFF3492	0.21	-0.4
3,528,749	+		GFF3492	0.22	-0.4
3,528,752	-		GFF3492	0.22	-2.3
3,528,753	-		GFF3492	0.22	-1.5
3,528,755	-		GFF3492	0.22	+0.3
3,528,756	-		GFF3492	0.22	-1.9
3,528,756	-		GFF3492	0.22	-1.3
3,528,756	-		GFF3492	0.22	-2.5
3,528,762	+		GFF3492	0.23	-0.6
3,528,770	-		GFF3492	0.23	+0.6
3,528,774	-		GFF3492	0.24	-1.4
3,528,791	-		GFF3492	0.25	-1.0
3,528,792	-		GFF3492	0.25	-0.6
3,528,820	+		GFF3492	0.27	-0.9
3,528,847	-		GFF3492	0.29	+0.1
3,528,850	+		GFF3492	0.30	-2.2
3,528,858	-		GFF3492	0.30	+0.5
3,528,858	-		GFF3492	0.30	-0.3
3,528,868	+		GFF3492	0.31	+0.3
3,528,868	+		GFF3492	0.31	-1.1
3,528,869	+		GFF3492	0.31	-0.3
3,528,894	+		GFF3492	0.33	-0.2
3,528,894	+		GFF3492	0.33	-0.6
3,528,897	-		GFF3492	0.33	+1.3
3,528,902	-		GFF3492	0.34	+0.2
3,528,902	-		GFF3492	0.34	-1.3
3,528,931	+		GFF3492	0.36	+1.2
3,528,931	+		GFF3492	0.36	-1.2
3,528,931	+		GFF3492	0.36	-0.4
3,528,931	+		GFF3492	0.36	-1.4
3,528,931	+		GFF3492	0.36	-3.6
3,528,931	+		GFF3492	0.36	-0.5
3,528,931	+		GFF3492	0.36	-0.7
3,528,935	-		GFF3492	0.37	+1.4
3,528,936	+		GFF3492	0.37	+1.1
3,528,936	+		GFF3492	0.37	+0.9
3,528,939	-		GFF3492	0.37	-0.3
3,528,939	-		GFF3492	0.37	+0.7
3,528,939	-		GFF3492	0.37	+1.6
3,528,939	-		GFF3492	0.37	+0.2
3,528,939	-		GFF3492	0.37	-0.1
3,528,939	-		GFF3492	0.37	-0.4
3,528,939	-		GFF3492	0.37	-0.9
3,528,939	-		GFF3492	0.37	+0.2
3,528,939	-		GFF3492	0.37	-1.5
3,528,939	-		GFF3492	0.37	-0.5
3,528,939	-		GFF3492	0.37	+0.6
3,528,939	-		GFF3492	0.37	-1.1
3,528,939	-		GFF3492	0.37	-0.1
3,528,939	-		GFF3492	0.37	-3.4
3,528,953	+		GFF3492	0.38	-0.2
3,528,953	+		GFF3492	0.38	-0.5
3,528,961	-		GFF3492	0.39	-0.7
3,528,984	-		GFF3492	0.41	-0.9
3,528,997	+		GFF3492	0.42	-1.6
3,529,003	+		GFF3492	0.42	-1.7
3,529,008	+		GFF3492	0.42	+0.2
3,529,008	+		GFF3492	0.42	-0.6
3,529,008	+		GFF3492	0.42	-1.1
3,529,008	+		GFF3492	0.42	-2.0
3,529,008	+		GFF3492	0.42	-0.2
3,529,016	-		GFF3492	0.43	-0.7
3,529,016	-		GFF3492	0.43	+0.5
3,529,043	-		GFF3492	0.45	+1.3
3,529,059	-		GFF3492	0.47	-3.0
3,529,061	+		GFF3492	0.47	+0.6
3,529,065	-		GFF3492	0.47	+0.3
3,529,065	-		GFF3492	0.47	+0.5
3,529,069	-		GFF3492	0.47	-0.1
3,529,130	-		GFF3492	0.52	-1.2
3,529,144	+		GFF3492	0.53	-0.0
3,529,147	-		GFF3492	0.54	-0.8
3,529,147	-		GFF3492	0.54	+0.4
3,529,152	-		GFF3492	0.54	-0.3
3,529,162	-		GFF3492	0.55	-1.2
3,529,165	+		GFF3492	0.55	-2.4
3,529,168	-		GFF3492	0.55	-0.2
3,529,168	-		GFF3492	0.55	-1.6
3,529,169	-		GFF3492	0.56	-0.3
3,529,170	-		GFF3492	0.56	-0.1
3,529,173	-		GFF3492	0.56	-0.5
3,529,173	-		GFF3492	0.56	-0.2
3,529,175	-		GFF3492	0.56	-3.5
3,529,189	-		GFF3492	0.57	-1.1
3,529,189	-		GFF3492	0.57	-0.3
3,529,194	+		GFF3492	0.58	-1.4
3,529,198	+		GFF3492	0.58	+0.0
3,529,212	+		GFF3492	0.59	-1.9
3,529,222	+		GFF3492	0.60	-0.6
3,529,226	-		GFF3492	0.60	+0.4
3,529,226	-		GFF3492	0.60	-1.5
3,529,230	-		GFF3492	0.60	-1.9
3,529,230	-		GFF3492	0.60	+0.8
3,529,232	+		GFF3492	0.61	-0.6
3,529,253	+		GFF3492	0.62	-0.3
3,529,255	+		GFF3492	0.62	+0.0
3,529,255	+		GFF3492	0.62	-1.2
3,529,264	+		GFF3492	0.63	-0.7
3,529,272	-		GFF3492	0.64	-0.2
3,529,298	+		GFF3492	0.66	-0.7
3,529,313	+		GFF3492	0.67	-1.6
3,529,316	-		GFF3492	0.67	-0.2
3,529,316	-		GFF3492	0.67	-0.5
3,529,318	+		GFF3492	0.68	-0.6
3,529,326	+		GFF3492	0.68	-1.3
3,529,327	+		GFF3492	0.68	+0.6
3,529,327	-		GFF3492	0.68	-0.8
3,529,339	+		GFF3492	0.69	-0.9
3,529,339	+		GFF3492	0.69	-0.0
3,529,339	+		GFF3492	0.69	-0.2
3,529,346	-		GFF3492	0.70	-0.6
3,529,352	-		GFF3492	0.70	-1.5
3,529,375	+		GFF3492	0.72	-1.2
3,529,380	+		GFF3492	0.73	+0.2
3,529,420	-		GFF3492	0.76	+0.3
3,529,420	-		GFF3492	0.76	-1.5
3,529,455	+		GFF3492	0.79	-0.8
3,529,455	+		GFF3492	0.79	-1.9
3,529,455	+		GFF3492	0.79	-0.8
3,529,455	+		GFF3492	0.79	+0.2
3,529,456	+		GFF3492	0.79	-0.6
3,529,463	-		GFF3492	0.79	+0.5
3,529,463	-		GFF3492	0.79	+1.1
3,529,463	-		GFF3492	0.79	-1.4
3,529,476	+		GFF3492	0.80	+0.0
3,529,483	-		GFF3492	0.81	+0.0
3,529,496	-		GFF3492	0.82	-0.4
3,529,514	+		GFF3492	0.83	-0.5
3,529,529	+		GFF3492	0.85	+0.4
3,529,550	+		GFF3492	0.86	-1.0
3,529,558	-		GFF3492	0.87	-0.4
3,529,563	-		GFF3492	0.87	-0.2
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3,529,782	-				+0.3
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3,530,644	-		GFF3493	0.81	-1.6