Strain Fitness in Sphingobium sp. HT1-2 around GFF3466

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,506,815	-		GFF3465	0.58	+0.4
3,506,815	-		GFF3465	0.58	-0.5
3,506,815	-		GFF3465	0.58	+0.2
3,506,844	+		GFF3465	0.60	-1.4
3,506,867	-		GFF3465	0.61	-0.4
3,506,875	-		GFF3465	0.61	+0.5
3,506,880	+		GFF3465	0.61	+1.0
3,506,913	+		GFF3465	0.63	+0.5
3,506,921	-		GFF3465	0.63	+0.5
3,506,921	-		GFF3465	0.63	-0.9
3,506,921	-		GFF3465	0.63	+0.1
3,506,962	+		GFF3465	0.66	+0.5
3,506,962	+		GFF3465	0.66	-0.3
3,506,972	+		GFF3465	0.66	-0.3
3,506,979	+		GFF3465	0.66	+0.3
3,506,990	-		GFF3465	0.67	-2.1
3,507,027	+		GFF3465	0.69	+1.1
3,507,027	+		GFF3465	0.69	-0.6
3,507,027	+		GFF3465	0.69	+0.7
3,507,027	+		GFF3465	0.69	+0.7
3,507,027	+		GFF3465	0.69	-0.9
3,507,027	+		GFF3465	0.69	+0.0
3,507,027	+		GFF3465	0.69	-0.9
3,507,035	-		GFF3465	0.69	-1.5
3,507,035	-		GFF3465	0.69	+0.2
3,507,035	-		GFF3465	0.69	+0.1
3,507,035	-		GFF3465	0.69	+0.3
3,507,035	-		GFF3465	0.69	-0.4
3,507,035	-		GFF3465	0.69	+0.6
3,507,035	-		GFF3465	0.69	-0.2
3,507,058	-		GFF3465	0.70	-0.4
3,507,079	-		GFF3465	0.71	-0.1
3,507,092	+		GFF3465	0.72	-1.6
3,507,092	+		GFF3465	0.72	-1.6
3,507,100	+		GFF3465	0.72	+0.7
3,507,100	+		GFF3465	0.72	-0.4
3,507,100	+		GFF3465	0.72	-0.1
3,507,100	-		GFF3465	0.72	-0.4
3,507,108	-		GFF3465	0.73	-3.0
3,507,108	-		GFF3465	0.73	+0.7
3,507,113	-		GFF3465	0.73	+0.9
3,507,115	+		GFF3465	0.73	-1.8
3,507,123	-		GFF3465	0.74	-0.4
3,507,158	+		GFF3465	0.75	-0.6
3,507,158	+		GFF3465	0.75	-0.3
3,507,178	+		GFF3465	0.76	+0.5
3,507,186	-		GFF3465	0.77	-0.6
3,507,186	-		GFF3465	0.77	-1.2
3,507,193	-		GFF3465	0.77	+0.3
3,507,214	-		GFF3465	0.78	+0.3
3,507,215	+		GFF3465	0.78	-0.3
3,507,219	-		GFF3465	0.78	-1.4
3,507,221	-		GFF3465	0.79	+0.2
3,507,231	-		GFF3465	0.79	-0.6
3,507,234	+		GFF3465	0.79	+0.7
3,507,252	-		GFF3465	0.80	-1.4
3,507,292	+		GFF3465	0.82	-2.1
3,507,318	-		GFF3465	0.83	+0.5
3,507,352	+		GFF3465	0.85	-2.9
3,507,381	+		GFF3465	0.87	-1.6
3,507,399	-		GFF3465	0.88	+1.0
3,507,422	+		GFF3465	0.89	-0.6
3,507,436	+		GFF3465	0.89	+0.6
3,507,456	+				-0.0
3,507,456	+				-2.2
3,507,456	+				+0.7
3,507,458	+				-0.6
3,507,464	-				-0.3
3,507,464	-				-2.4
3,507,464	-				-0.5
3,507,466	-				-0.4
3,507,517	+				-0.3
3,507,519	+				-0.9
3,507,519	+				+0.8
3,507,536	-				+1.0
3,507,547	+				-0.2
3,507,555	+				+0.6
3,507,573	+				-0.5
3,507,581	+				-0.7
3,507,581	-				+1.2
3,507,586	+				+0.6
3,507,604	+				+0.5
3,507,612	-				+0.5
3,507,614	+				-0.2
3,507,620	-				-2.0
3,507,641	+				+0.2
3,507,647	-				+0.1
3,507,647	-				+0.0
3,507,664	+				-0.9
3,507,672	-				-0.3
3,507,674	+				+0.5
3,507,684	+				+0.4
3,507,692	-				-0.4
3,507,707	+				-0.8
3,507,711	-				+0.9
3,507,713	+				+0.1
3,507,713	+				-0.3
3,507,713	+				-0.9
3,507,713	+				+2.0
3,507,717	+				+0.4
3,507,717	+				-1.2
3,507,717	+				+1.5
3,507,717	+				-0.9
3,507,717	+				+0.2
3,507,717	+				-0.1
3,507,725	-				-0.2
3,507,725	-				+0.4
3,507,725	-				+0.0
3,507,725	-				+0.5
3,507,725	-				-0.2
3,507,727	+				+0.7
3,507,733	-				-0.9
3,507,735	+				-0.2
3,507,735	+				+0.9
3,507,737	-				+0.0
3,507,743	-				-0.8
3,507,746	+				-1.1
3,507,770	+				+1.3
3,507,770	+				+0.2
3,507,773	-				-2.1
3,507,775	+				-0.4
3,507,775	+				-2.7
3,507,775	+				-1.4
3,507,775	+				-1.8
3,507,775	+				+0.3
3,507,775	+				-0.1
3,507,775	+				+0.3
3,507,775	+				-0.2
3,507,775	+				+0.2
3,507,775	+				+0.4
3,507,775	+				-0.6
3,507,775	+				-0.0
3,507,775	+				-0.3
3,507,775	+				-1.3
3,507,775	+				-0.1
3,507,775	+				-0.6
3,507,775	+				-0.7
3,507,775	+				+0.9
3,507,775	+				-1.7
3,507,778	-				+0.4
3,507,778	-				+0.8
3,507,778	-				-1.1
3,507,783	-				+0.4
3,507,783	-				+0.4
3,507,783	-				-0.5
3,507,783	-				-0.3
3,507,783	-				-1.8
3,507,783	-				-1.0
3,507,783	-				-1.8
3,507,783	-				-0.3
3,507,783	-				+0.2
3,507,783	-				-0.9
3,507,783	-				-1.0
3,507,783	-				-0.1
3,507,783	-				-1.0
3,507,783	-				+0.4
3,507,783	-				-1.0
3,507,785	+				-2.0
3,507,788	-				-0.2
3,507,792	+				-2.3
3,507,793	-				+1.2
3,507,793	-				+1.4
3,507,793	-				-0.2
3,507,819	+				-2.8
3,507,820	+				+0.2
3,507,855	+				+0.0
3,507,870	-				+0.4
3,507,870	-				+0.2
3,507,884	+				-0.9
3,507,920	+		GFF3466	0.10	+1.6
3,507,935	+		GFF3466	0.11	-1.6
3,507,940	+		GFF3466	0.12	-1.3
3,507,943	-		GFF3466	0.12	-0.9
3,507,956	+		GFF3466	0.13	-2.3
3,507,959	-		GFF3466	0.14	-0.4
3,507,966	+		GFF3466	0.14	+0.5
3,507,974	-		GFF3466	0.15	-0.2
3,507,976	+		GFF3466	0.15	+0.2
3,507,976	+		GFF3466	0.15	+0.7
3,507,980	+		GFF3466	0.16	+1.0
3,507,982	-		GFF3466	0.16	-1.6
3,507,982	-		GFF3466	0.16	-0.9
3,507,982	-		GFF3466	0.16	-0.2
3,507,982	-		GFF3466	0.16	-0.7
3,507,984	-		GFF3466	0.16	-0.8
3,507,984	-		GFF3466	0.16	-0.3
3,507,984	-		GFF3466	0.16	-0.1
3,507,984	-		GFF3466	0.16	-1.3
3,507,984	-		GFF3466	0.16	-0.2
3,507,984	-		GFF3466	0.16	-2.3
3,507,984	-		GFF3466	0.16	-0.6
3,508,022	-		GFF3466	0.20	-0.1
3,508,043	-		GFF3466	0.22	+0.6
3,508,081	+		GFF3466	0.25	-1.0
3,508,081	+		GFF3466	0.25	+0.0
3,508,089	-		GFF3466	0.26	+0.2
3,508,095	+		GFF3466	0.27	-1.7
3,508,096	-		GFF3466	0.27	-1.5
3,508,103	-		GFF3466	0.27	-0.7
3,508,103	-		GFF3466	0.27	-0.8
3,508,103	-		GFF3466	0.27	+0.5
3,508,123	+		GFF3466	0.29	-2.5
3,508,125	-		GFF3466	0.30	-0.1
3,508,125	-		GFF3466	0.30	-1.6
3,508,190	-		GFF3466	0.36	-0.9
3,508,194	+		GFF3466	0.36	+0.4
3,508,224	+		GFF3466	0.39	-0.8
3,508,224	+		GFF3466	0.39	-0.4
3,508,234	+		GFF3466	0.40	+0.8
3,508,241	+		GFF3466	0.41	-0.7
3,508,253	+		GFF3466	0.42	+0.3
3,508,261	-		GFF3466	0.42	-0.8
3,508,287	-		GFF3466	0.45	-0.8
3,508,292	-		GFF3466	0.45	+0.7
3,508,307	+		GFF3466	0.47	-1.6
3,508,320	-		GFF3466	0.48	-1.6
3,508,329	+		GFF3466	0.49	+0.3
3,508,334	+		GFF3466	0.49	-1.4
3,508,334	+		GFF3466	0.49	-1.3
3,508,334	+		GFF3466	0.49	+0.2
3,508,337	-		GFF3466	0.50	+0.1
3,508,342	-		GFF3466	0.50	-1.6
3,508,342	-		GFF3466	0.50	-2.3
3,508,347	+		GFF3466	0.51	-1.8
3,508,369	+		GFF3466	0.53	+0.1
3,508,375	+		GFF3466	0.53	+0.5
3,508,386	+		GFF3466	0.54	-1.6
3,508,395	+		GFF3466	0.55	-2.5
3,508,399	-		GFF3466	0.56	-1.0
3,508,425	-		GFF3466	0.58	+0.6
3,508,431	-		GFF3466	0.59	+0.4
3,508,457	+		GFF3466	0.61	-0.5
3,508,465	-		GFF3466	0.62	+0.8
3,508,465	-		GFF3466	0.62	-1.6
3,508,498	+		GFF3466	0.65	+0.5
3,508,504	-		GFF3466	0.66	+0.3
3,508,504	-		GFF3466	0.66	+0.8
3,508,504	-		GFF3466	0.66	+0.2
3,508,506	+		GFF3466	0.66	-2.1
3,508,514	-		GFF3466	0.66	+0.5
3,508,515	-		GFF3466	0.67	-0.8
3,508,537	+		GFF3466	0.69	-0.1
3,508,537	+		GFF3466	0.69	-0.8
3,508,537	+		GFF3466	0.69	-0.2
3,508,539	+		GFF3466	0.69	+1.3
3,508,567	-		GFF3466	0.72	-0.8
3,508,575	+		GFF3466	0.72	-2.8
3,508,575	+		GFF3466	0.72	+0.2
3,508,575	-		GFF3466	0.72	-1.2
3,508,581	-		GFF3466	0.73	-1.3
3,508,582	+		GFF3466	0.73	+0.2
3,508,593	-		GFF3466	0.74	+0.5
3,508,593	-		GFF3466	0.74	+2.0
3,508,593	-		GFF3466	0.74	-0.1
3,508,596	+		GFF3466	0.74	-2.3
3,508,598	+		GFF3466	0.74	+0.9
3,508,604	+		GFF3466	0.75	-1.9
3,508,628	+		GFF3466	0.77	-0.5
3,508,632	+		GFF3466	0.78	-1.2
3,508,636	-		GFF3466	0.78	-3.1
3,508,638	+		GFF3466	0.78	-2.5
3,508,640	-		GFF3466	0.78	-1.2
3,508,651	-		GFF3466	0.79	-0.3
3,508,672	+		GFF3466	0.81	+0.4
3,508,687	-		GFF3466	0.83	-0.1
3,508,697	+		GFF3466	0.84	+1.2
3,508,703	-		GFF3466	0.84	-0.7
3,508,736	+		GFF3466	0.88	-0.8
3,508,741	+		GFF3466	0.88	-0.8
3,508,741	+		GFF3466	0.88	-0.1
3,508,741	+		GFF3466	0.88	+0.6
3,508,741	+		GFF3466	0.88	+0.3
3,508,741	+		GFF3466	0.88	+0.3
3,508,744	-		GFF3466	0.88	+0.2
3,508,749	-		GFF3466	0.89	-0.1
3,508,749	-		GFF3466	0.89	-1.0
3,508,749	-		GFF3466	0.89	+0.2
3,508,749	-		GFF3466	0.89	-1.2
3,508,749	-		GFF3466	0.89	+0.5
3,508,759	+		GFF3466	0.90	-0.2
3,508,761	+				-0.2
3,508,761	+				-0.2
3,508,784	+				-2.6
3,508,795	+				-2.6
3,508,796	+				-0.2
3,508,804	-				-0.6
3,508,810	+				+1.4
3,508,914	+				-0.3
3,508,942	+				-0.6
3,508,950	+				-0.0
3,508,985	+				-0.3
3,508,993	-				+1.0
3,509,005	+				+0.9
3,509,005	+				-0.7
3,509,031	+				+0.6
3,509,056	+				-0.1
3,509,084	+				+0.3
3,509,084	+				-0.2
3,509,095	+				+0.4
3,509,095	+				-1.1
3,509,097	-				-0.7
3,509,110	+		GFF3467	0.11	-0.1
3,509,145	+		GFF3467	0.15	-1.2
3,509,145	+		GFF3467	0.15	+0.4
3,509,145	+		GFF3467	0.15	-1.0
3,509,145	+		GFF3467	0.15	-0.5
3,509,145	+		GFF3467	0.15	-0.8
3,509,145	+		GFF3467	0.15	-0.5
3,509,145	+		GFF3467	0.15	-1.2
3,509,145	+		GFF3467	0.15	+0.2
3,509,145	+		GFF3467	0.15	-0.6
3,509,145	+		GFF3467	0.15	-0.4
3,509,145	+		GFF3467	0.15	-0.8
3,509,145	+		GFF3467	0.15	-0.8
3,509,145	+		GFF3467	0.15	-0.9
3,509,150	+		GFF3467	0.16	-0.2
3,509,150	+		GFF3467	0.16	-1.5
3,509,150	+		GFF3467	0.16	+0.2
3,509,150	+		GFF3467	0.16	-1.6
3,509,150	+		GFF3467	0.16	-0.4
3,509,150	+		GFF3467	0.16	-0.4
3,509,150	+		GFF3467	0.16	+0.7
3,509,153	-		GFF3467	0.16	-1.1
3,509,153	-		GFF3467	0.16	-1.4
3,509,153	-		GFF3467	0.16	-0.3
3,509,153	-		GFF3467	0.16	+0.8
3,509,153	-		GFF3467	0.16	+0.4
3,509,153	-		GFF3467	0.16	-1.2
3,509,153	-		GFF3467	0.16	+0.7
3,509,153	-		GFF3467	0.16	-0.4
3,509,155	+		GFF3467	0.16	-0.7
3,509,158	-		GFF3467	0.16	-0.1
3,509,158	-		GFF3467	0.16	+0.7
3,509,158	-		GFF3467	0.16	-2.1
3,509,164	+		GFF3467	0.17	+0.9
3,509,164	+		GFF3467	0.17	+0.4
3,509,175	+		GFF3467	0.18	-0.5
3,509,179	-		GFF3467	0.19	-0.8
3,509,183	-		GFF3467	0.19	-1.0
3,509,186	+		GFF3467	0.19	-2.4
3,509,187	-		GFF3467	0.20	-0.7
3,509,194	-		GFF3467	0.20	+0.5
3,509,198	+		GFF3467	0.21	-0.6
3,509,198	+		GFF3467	0.21	-0.3
3,509,206	-		GFF3467	0.22	-2.4
3,509,206	-		GFF3467	0.22	-2.3
3,509,206	-		GFF3467	0.22	-0.7
3,509,206	-		GFF3467	0.22	+0.6
3,509,206	-		GFF3467	0.22	+0.4
3,509,206	-		GFF3467	0.22	+0.4
3,509,250	+		GFF3467	0.26	+1.3
3,509,253	-		GFF3467	0.27	+0.3
3,509,255	+		GFF3467	0.27	-0.5
3,509,255	+		GFF3467	0.27	-0.1
3,509,273	-		GFF3467	0.29	-2.0
3,509,289	+		GFF3467	0.31	+1.0
3,509,289	+		GFF3467	0.31	+0.0
3,509,302	-		GFF3467	0.32	-0.2
3,509,302	-		GFF3467	0.32	-1.4
3,509,381	+		GFF3467	0.41	-1.0
3,509,394	-		GFF3467	0.42	+0.0
3,509,395	-		GFF3467	0.42	-0.5
3,509,407	+		GFF3467	0.44	-0.1
3,509,407	+		GFF3467	0.44	-0.2
3,509,422	-		GFF3467	0.45	-0.2
3,509,484	-		GFF3467	0.52	-0.4
3,509,485	-		GFF3467	0.52	-2.2
3,509,506	-		GFF3467	0.54	-0.4
3,509,506	-		GFF3467	0.54	+0.5
3,509,506	-		GFF3467	0.54	-0.7
3,509,511	-		GFF3467	0.55	-0.2
3,509,516	-		GFF3467	0.56	-2.5
3,509,537	-		GFF3467	0.58	+0.6
3,509,537	-		GFF3467	0.58	+0.1
3,509,559	-		GFF3467	0.60	+0.4
3,509,561	+		GFF3467	0.60	-0.0
3,509,561	+		GFF3467	0.60	-0.0
3,509,561	+		GFF3467	0.60	+0.1
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