Strain Fitness in Sphingobium sp. HT1-2 around GFF3461

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,500,213	-		GFF3460	0.12	-0.6
3,500,223	+		GFF3460	0.13	-2.1
3,500,223	+		GFF3460	0.13	-1.3
3,500,223	-		GFF3460	0.13	+0.1
3,500,236	+		GFF3460	0.15	-1.0
3,500,249	-		GFF3460	0.16	-0.7
3,500,258	+		GFF3460	0.17	-1.9
3,500,258	-		GFF3460	0.17	-0.8
3,500,264	+		GFF3460	0.18	-0.3
3,500,301	+		GFF3460	0.21	+0.7
3,500,335	-		GFF3460	0.25	+0.1
3,500,345	-		GFF3460	0.26	-1.3
3,500,347	+		GFF3460	0.26	-2.6
3,500,347	+		GFF3460	0.26	-1.3
3,500,347	+		GFF3460	0.26	-1.5
3,500,347	-		GFF3460	0.26	-0.4
3,500,355	-		GFF3460	0.27	-0.6
3,500,355	-		GFF3460	0.27	-0.4
3,500,355	-		GFF3460	0.27	-1.3
3,500,355	-		GFF3460	0.27	+0.9
3,500,355	-		GFF3460	0.27	+0.5
3,500,355	-		GFF3460	0.27	-0.0
3,500,355	-		GFF3460	0.27	-2.4
3,500,355	-		GFF3460	0.27	+0.1
3,500,355	-		GFF3460	0.27	+0.8
3,500,365	-		GFF3460	0.28	-0.4
3,500,371	-		GFF3460	0.29	+0.3
3,500,420	-		GFF3460	0.34	-2.4
3,500,428	+		GFF3460	0.34	-0.7
3,500,436	-		GFF3460	0.35	-0.1
3,500,438	+		GFF3460	0.35	+0.1
3,500,440	+		GFF3460	0.36	-0.9
3,500,440	+		GFF3460	0.36	-1.6
3,500,456	-		GFF3460	0.37	-0.4
3,500,458	+		GFF3460	0.37	+0.5
3,500,458	+		GFF3460	0.37	-3.0
3,500,458	+		GFF3460	0.37	-1.4
3,500,458	+		GFF3460	0.37	-2.3
3,500,463	+		GFF3460	0.38	+0.3
3,500,466	-		GFF3460	0.38	+1.0
3,500,471	-		GFF3460	0.39	+1.2
3,500,471	-		GFF3460	0.39	-0.8
3,500,478	-		GFF3460	0.39	-1.8
3,500,515	+		GFF3460	0.43	-0.1
3,500,515	+		GFF3460	0.43	-0.9
3,500,515	+		GFF3460	0.43	+0.5
3,500,515	+		GFF3460	0.43	-0.8
3,500,523	-		GFF3460	0.44	-2.4
3,500,523	-		GFF3460	0.44	-0.6
3,500,523	-		GFF3460	0.44	-0.8
3,500,523	-		GFF3460	0.44	+0.8
3,500,524	-		GFF3460	0.44	-0.6
3,500,524	-		GFF3460	0.44	-1.4
3,500,527	-		GFF3460	0.44	-1.6
3,500,527	-		GFF3460	0.44	-0.7
3,500,566	+		GFF3460	0.48	+0.4
3,500,580	+		GFF3460	0.50	+0.8
3,500,585	+		GFF3460	0.50	-1.3
3,500,588	-		GFF3460	0.51	-1.6
3,500,588	-		GFF3460	0.51	+0.0
3,500,588	-		GFF3460	0.51	+0.4
3,500,599	+		GFF3460	0.52	-0.9
3,500,625	+		GFF3460	0.54	+0.6
3,500,625	+		GFF3460	0.54	-0.4
3,500,625	+		GFF3460	0.54	+0.2
3,500,641	+		GFF3460	0.56	-0.5
3,500,643	+		GFF3460	0.56	-0.0
3,500,649	-		GFF3460	0.57	-0.3
3,500,663	+		GFF3460	0.58	-1.1
3,500,664	+		GFF3460	0.58	-2.4
3,500,665	+		GFF3460	0.59	-1.3
3,500,665	+		GFF3460	0.59	+0.2
3,500,673	-		GFF3460	0.59	+0.0
3,500,678	-		GFF3460	0.60	+0.8
3,500,683	-		GFF3460	0.60	+0.0
3,500,728	+		GFF3460	0.65	-1.5
3,500,728	+		GFF3460	0.65	+0.2
3,500,728	+		GFF3460	0.65	+0.2
3,500,733	+		GFF3460	0.65	+0.8
3,500,736	-		GFF3460	0.66	+0.0
3,500,736	-		GFF3460	0.66	-1.3
3,500,736	-		GFF3460	0.66	+0.2
3,500,736	-		GFF3460	0.66	+1.2
3,500,741	-		GFF3460	0.66	-0.9
3,500,741	-		GFF3460	0.66	+0.7
3,500,749	-		GFF3460	0.67	-1.2
3,500,757	+		GFF3460	0.68	+0.6
3,500,776	+		GFF3460	0.70	+0.1
3,500,801	-		GFF3460	0.72	+0.2
3,500,863	+		GFF3460	0.79	-2.9
3,500,864	+		GFF3460	0.79	+0.3
3,500,887	-		GFF3460	0.81	-0.2
3,500,889	+		GFF3460	0.81	-0.0
3,500,890	+		GFF3460	0.81	-0.6
3,500,894	+		GFF3460	0.82	-1.5
3,500,894	+		GFF3460	0.82	-0.6
3,500,894	+		GFF3460	0.82	-0.9
3,500,898	-		GFF3460	0.82	-0.4
3,500,902	-		GFF3460	0.83	-2.3
3,500,902	-		GFF3460	0.83	-0.3
3,500,903	-		GFF3460	0.83	+0.3
3,500,904	-		GFF3460	0.83	-0.0
3,500,913	+		GFF3460	0.84	+0.4
3,500,921	-		GFF3460	0.85	-0.6
3,500,921	-		GFF3460	0.85	+0.3
3,500,937	+		GFF3460	0.86	-2.4
3,500,968	-		GFF3460	0.89	-1.6
3,500,977	+				-0.8
3,500,977	+				-0.8
3,501,010	+				-0.8
3,501,027	+				-0.6
3,501,035	-				+1.0
3,501,035	-				+0.4
3,501,045	-				-0.9
3,501,075	-				-1.4
3,501,076	+				-0.3
3,501,097	+				+0.5
3,501,105	-				-0.5
3,501,105	-				-0.1
3,501,116	+				+0.0
3,501,121	+				+0.3
3,501,126	-				+0.1
3,501,163	+				+0.5
3,501,163	+				+0.5
3,501,163	+				+0.2
3,501,166	+				-1.6
3,501,168	+				-1.1
3,501,171	-				+0.9
3,501,181	+				+0.0
3,501,181	+				-1.3
3,501,186	+				+1.3
3,501,186	+				-1.3
3,501,186	+				-0.5
3,501,186	+				-0.5
3,501,186	+				-1.1
3,501,186	+				+0.7
3,501,186	+				-0.6
3,501,189	-				+1.5
3,501,189	-				-0.5
3,501,193	-				-0.6
3,501,194	-				+1.6
3,501,227	-				+0.5
3,501,246	+				-0.4
3,501,288	+				+0.2
3,501,288	+				-0.6
3,501,293	+				+0.1
3,501,293	+				-1.7
3,501,293	+				-2.0
3,501,293	+				-0.3
3,501,293	+				-0.1
3,501,296	-				-0.3
3,501,296	-				+1.1
3,501,296	-				-1.7
3,501,301	-				+1.2
3,501,301	-				-0.7
3,501,301	-				+0.2
3,501,301	-				-0.3
3,501,301	-				+0.5
3,501,303	+				+0.1
3,501,306	-				+0.0
3,501,306	-				+0.3
3,501,306	-				+0.5
3,501,306	-				+0.6
3,501,347	+				-0.4
3,501,377	+		GFF3461	0.11	-1.6
3,501,385	-		GFF3461	0.11	-0.3
3,501,395	+		GFF3461	0.12	-1.7
3,501,395	+		GFF3461	0.12	+0.2
3,501,395	+		GFF3461	0.12	-2.3
3,501,403	-		GFF3461	0.13	+1.4
3,501,403	-		GFF3461	0.13	-0.9
3,501,403	-		GFF3461	0.13	-2.5
3,501,425	+		GFF3461	0.14	+0.8
3,501,425	+		GFF3461	0.14	+0.1
3,501,460	-		GFF3461	0.16	+0.8
3,501,469	-		GFF3461	0.17	+0.3
3,501,469	-		GFF3461	0.17	+0.2
3,501,496	+		GFF3461	0.19	+0.0
3,501,504	-		GFF3461	0.19	+0.8
3,501,506	+		GFF3461	0.19	-0.3
3,501,521	-		GFF3461	0.20	-0.1
3,501,539	-		GFF3461	0.21	-0.5
3,501,547	-		GFF3461	0.22	-1.3
3,501,587	-		GFF3461	0.25	+0.5
3,501,595	+		GFF3461	0.25	-2.1
3,501,595	+		GFF3461	0.25	-0.1
3,501,603	-		GFF3461	0.26	-2.7
3,501,603	-		GFF3461	0.26	+0.2
3,501,603	-		GFF3461	0.26	-0.4
3,501,603	-		GFF3461	0.26	-2.4
3,501,603	-		GFF3461	0.26	-0.1
3,501,613	-		GFF3461	0.26	-2.0
3,501,688	-		GFF3461	0.31	-1.5
3,501,745	+		GFF3461	0.35	+0.2
3,501,750	+		GFF3461	0.35	-1.1
3,501,753	-		GFF3461	0.36	+0.2
3,501,764	+		GFF3461	0.36	+0.1
3,501,764	+		GFF3461	0.36	+0.1
3,501,764	+		GFF3461	0.36	-1.1
3,501,765	-		GFF3461	0.36	-0.8
3,501,772	-		GFF3461	0.37	+0.3
3,501,772	-		GFF3461	0.37	+0.2
3,501,772	-		GFF3461	0.37	-2.5
3,501,772	-		GFF3461	0.37	-0.2
3,501,772	-		GFF3461	0.37	+0.8
3,501,772	-		GFF3461	0.37	+0.2
3,501,824	+		GFF3461	0.40	+0.4
3,501,843	+		GFF3461	0.42	-0.6
3,501,845	-		GFF3461	0.42	+0.2
3,501,845	-		GFF3461	0.42	-0.0
3,501,848	+		GFF3461	0.42	-2.9
3,501,848	+		GFF3461	0.42	-0.7
3,501,848	+		GFF3461	0.42	-0.1
3,501,848	+		GFF3461	0.42	+1.2
3,501,851	+		GFF3461	0.42	-0.2
3,501,851	+		GFF3461	0.42	-0.6
3,501,856	-		GFF3461	0.42	-0.7
3,501,859	-		GFF3461	0.43	+0.7
3,501,859	-		GFF3461	0.43	-0.6
3,501,861	-		GFF3461	0.43	-1.0
3,501,899	+		GFF3461	0.45	-0.3
3,501,971	+		GFF3461	0.50	-0.4
3,501,993	-		GFF3461	0.51	+0.2
3,502,018	+		GFF3461	0.53	-0.6
3,502,020	+		GFF3461	0.53	-1.3
3,502,063	+		GFF3461	0.56	-0.7
3,502,063	+		GFF3461	0.56	-1.8
3,502,071	-		GFF3461	0.57	-2.0
3,502,071	-		GFF3461	0.57	-0.9
3,502,071	-		GFF3461	0.57	-1.4
3,502,129	+		GFF3461	0.60	-1.6
3,502,132	-		GFF3461	0.61	-0.3
3,502,134	+		GFF3461	0.61	+1.0
3,502,142	-		GFF3461	0.61	+0.7
3,502,142	-		GFF3461	0.61	-1.3
3,502,142	-		GFF3461	0.61	+0.6
3,502,148	+		GFF3461	0.62	-0.1
3,502,156	-		GFF3461	0.62	-1.1
3,502,167	+		GFF3461	0.63	+0.3
3,502,175	-		GFF3461	0.63	-1.9
3,502,203	-		GFF3461	0.65	+0.3
3,502,226	+		GFF3461	0.67	+0.0
3,502,226	+		GFF3461	0.67	-1.0
3,502,227	-		GFF3461	0.67	-0.3
3,502,232	+		GFF3461	0.67	-1.0
3,502,234	-		GFF3461	0.67	+0.1
3,502,234	-		GFF3461	0.67	+0.4
3,502,234	-		GFF3461	0.67	-1.3
3,502,242	-		GFF3461	0.68	-0.4
3,502,255	+		GFF3461	0.69	+1.5
3,502,261	+		GFF3461	0.69	-0.9
3,502,269	-		GFF3461	0.70	-0.8
3,502,283	-		GFF3461	0.70	+0.0
3,502,288	-		GFF3461	0.71	-0.4
3,502,293	-		GFF3461	0.71	-1.2
3,502,307	+		GFF3461	0.72	-1.2
3,502,341	-		GFF3461	0.74	-1.5
3,502,367	+		GFF3461	0.76	-1.4
3,502,378	+		GFF3461	0.77	+1.0
3,502,449	+		GFF3461	0.81	-0.3
3,502,457	-		GFF3461	0.82	-1.8
3,502,480	+		GFF3461	0.83	-1.5
3,502,488	-		GFF3461	0.84	-0.2
3,502,488	-		GFF3461	0.84	-0.4
3,502,488	-		GFF3461	0.84	-0.5
3,502,495	+		GFF3461	0.84	-0.9
3,502,497	+		GFF3461	0.85	-0.7
3,502,497	+		GFF3461	0.85	+0.1
3,502,502	+		GFF3461	0.85	-0.4
3,502,502	+		GFF3461	0.85	-1.4
3,502,502	+		GFF3461	0.85	-0.0
3,502,505	-		GFF3461	0.85	+0.0
3,502,505	-		GFF3461	0.85	-0.2
3,502,505	-		GFF3461	0.85	-0.4
3,502,505	-		GFF3461	0.85	-0.8
3,502,510	-		GFF3461	0.85	+1.6
3,502,510	-		GFF3461	0.85	+1.0
3,502,510	-		GFF3461	0.85	+0.5
3,502,510	-		GFF3461	0.85	-0.4
3,502,510	-		GFF3461	0.85	-0.9
3,502,524	+		GFF3461	0.86	-1.5
3,502,524	+		GFF3461	0.86	+0.4
3,502,525	+		GFF3461	0.86	-1.6
3,502,532	+		GFF3461	0.87	-1.8
3,502,532	+		GFF3461	0.87	-0.9
3,502,532	+		GFF3461	0.87	-0.4
3,502,532	+		GFF3461	0.87	-0.5
3,502,533	-		GFF3461	0.87	+0.9
3,502,533	-		GFF3461	0.87	-0.4
3,502,533	-		GFF3461	0.87	-1.7
3,502,533	-		GFF3461	0.87	+0.2
3,502,533	-		GFF3461	0.87	-0.5
3,502,540	-		GFF3461	0.87	+0.3
3,502,550	-		GFF3461	0.88	+0.3
3,502,601	-				-0.3
3,502,609	-				+0.5
3,502,614	-				-0.8
3,502,648	-				-0.2
3,502,650	-				-2.9
3,502,650	-				+1.3
3,502,656	+				-0.5
3,502,661	+				+0.2
3,502,664	-				-0.3
3,502,664	-				+0.0
3,502,664	-				+0.4
3,502,666	+				-0.0
3,502,666	+				-0.9
3,502,669	-				+0.1
3,502,669	-				+0.6
3,502,674	-				-2.2
3,502,708	-				-0.9
3,502,717	-				-0.6
3,502,731	+				+0.3
3,502,731	+				-0.4
3,502,739	-				+0.4
3,502,761	-				-0.6
3,502,781	-				+0.3
3,502,788	-				-0.5
3,502,788	-				-0.4
3,502,830	+				+1.0
3,502,830	-				-0.2
3,502,835	+				+1.2
3,502,838	-				-2.5
3,502,838	-				-0.9
3,502,838	-				+1.2
3,502,838	-				+0.2
3,502,841	+				-2.3
3,502,875	+				+0.2
3,502,875	+				+1.5
3,502,883	-				-0.3
3,502,883	-				-0.5
3,502,883	-				-0.4
3,502,883	-				+0.4
3,502,883	-				-0.9
3,502,886	-				+0.3
3,502,886	-				+0.0
3,502,886	-				-0.5
3,502,897	+				-0.9
3,502,919	+				-0.5
3,502,934	+				+0.4
3,502,937	-		GFF3462	0.10	-0.3
3,502,941	+		GFF3462	0.11	+0.5
3,502,942	-		GFF3462	0.11	-0.6
3,502,944	+		GFF3462	0.11	+0.6
3,502,947	-		GFF3462	0.11	+0.4
3,502,952	-		GFF3462	0.12	-0.7
3,502,988	+		GFF3462	0.16	+0.4
3,503,013	+		GFF3462	0.19	+0.9
3,503,017	+		GFF3462	0.19	+0.1
3,503,025	-		GFF3462	0.20	+0.1
3,503,031	+		GFF3462	0.21	-0.6
3,503,048	+		GFF3462	0.23	+0.1
3,503,056	-		GFF3462	0.24	-1.7
3,503,056	-		GFF3462	0.24	-0.1
3,503,073	+		GFF3462	0.25	-0.4
3,503,073	-		GFF3462	0.25	-2.0
3,503,077	+		GFF3462	0.26	+2.0
3,503,081	-		GFF3462	0.26	-1.1
3,503,081	-		GFF3462	0.26	+0.8
3,503,100	+		GFF3462	0.28	+1.2
3,503,105	+		GFF3462	0.29	+0.4
3,503,105	+		GFF3462	0.29	+1.0
3,503,105	+		GFF3462	0.29	+0.4
3,503,105	+		GFF3462	0.29	-0.6
3,503,105	+		GFF3462	0.29	-0.8
3,503,105	+		GFF3462	0.29	-0.7
3,503,105	+		GFF3462	0.29	+0.9
3,503,105	+		GFF3462	0.29	-0.6
3,503,105	+		GFF3462	0.29	-0.2
3,503,105	+		GFF3462	0.29	-0.5
3,503,105	+		GFF3462	0.29	+1.4
3,503,105	+		GFF3462	0.29	+0.8
3,503,105	+		GFF3462	0.29	+1.0
3,503,105	+		GFF3462	0.29	-0.4
3,503,105	+		GFF3462	0.29	-0.2
3,503,105	+		GFF3462	0.29	+0.4
3,503,113	-		GFF3462	0.30	+1.1
3,503,113	-		GFF3462	0.30	+0.5
3,503,113	-		GFF3462	0.30	-0.5
3,503,113	-		GFF3462	0.30	-0.2
3,503,113	-		GFF3462	0.30	+0.8
3,503,113	-		GFF3462	0.30	+0.8
3,503,113	-		GFF3462	0.30	+0.7
3,503,113	-		GFF3462	0.30	-1.1
3,503,113	-		GFF3462	0.30	-1.0
3,503,113	-		GFF3462	0.30	+0.7
3,503,113	-		GFF3462	0.30	-1.2
3,503,113	-		GFF3462	0.30	-2.2
3,503,113	-		GFF3462	0.30	+0.4
3,503,113	-		GFF3462	0.30	+0.7
3,503,113	-		GFF3462	0.30	-0.5
3,503,113	-		GFF3462	0.30	-0.7
3,503,119	+		GFF3462	0.31	+1.4
3,503,137	-		GFF3462	0.33	-0.3
3,503,137	-		GFF3462	0.33	-0.7
3,503,137	-		GFF3462	0.33	+0.6
3,503,137	-		GFF3462	0.33	+0.6
3,503,137	-		GFF3462	0.33	+0.6
3,503,137	-		GFF3462	0.33	+0.3
3,503,137	-		GFF3462	0.33	+1.1
3,503,137	-		GFF3462	0.33	+1.0
3,503,153	-		GFF3462	0.34	+0.4
3,503,153	-		GFF3462	0.34	+0.4
3,503,159	-		GFF3462	0.35	+0.6
3,503,161	+		GFF3462	0.35	+0.2
3,503,169	-		GFF3462	0.36	-1.0
3,503,221	+		GFF3462	0.42	+1.5
3,503,249	+		GFF3462	0.45	+1.1
3,503,262	-		GFF3462	0.47	+1.0
3,503,265	+		GFF3462	0.47	+0.7
3,503,265	+		GFF3462	0.47	+1.1
3,503,273	-		GFF3462	0.48	-0.2
3,503,273	-		GFF3462	0.48	+0.9
3,503,273	-		GFF3462	0.48	-0.1
3,503,273	-		GFF3462	0.48	-0.0
3,503,273	-		GFF3462	0.48	+0.0
3,503,273	-		GFF3462	0.48	-0.2
3,503,273	-		GFF3462	0.48	+0.9
3,503,281	-		GFF3462	0.49	-0.4
3,503,283	+		GFF3462	0.49	-0.1
3,503,287	+		GFF3462	0.50	-0.2
3,503,291	-		GFF3462	0.50	-1.9
3,503,296	-		GFF3462	0.51	+0.8
3,503,324	+		GFF3462	0.54	-0.6
3,503,329	+		GFF3462	0.54	-1.0
3,503,417	+		GFF3462	0.64	-0.1
3,503,417	+		GFF3462	0.64	+1.2
3,503,425	-		GFF3462	0.65	-0.3
3,503,427	+		GFF3462	0.65	-0.3
3,503,448	+		GFF3462	0.68	+1.7
3,503,459	-		GFF3462	0.69	+1.1
3,503,468	-		GFF3462	0.70	+0.6
3,503,476	-		GFF3462	0.71	+0.2
3,503,478	-		GFF3462	0.71	-0.0
3,503,500	+		GFF3462	0.74	+0.7
3,503,510	+		GFF3462	0.75	+0.2
3,503,515	-		GFF3462	0.75	+0.6
3,503,515	-		GFF3462	0.75	-1.9
3,503,515	-		GFF3462	0.75	-0.5
3,503,518	-		GFF3462	0.76	-0.6
3,503,518	-		GFF3462	0.76	-1.2
3,503,531	+		GFF3462	0.77	+0.3
3,503,531	+		GFF3462	0.77	+0.5
3,503,539	-		GFF3462	0.78	+0.0
3,503,539	-		GFF3462	0.78	-0.3
3,503,546	+		GFF3462	0.79	+0.5
3,503,548	+		GFF3462	0.79	-0.5
3,503,607	+		GFF3462	0.86	-0.0
3,503,615	-		GFF3462	0.86	+0.5
3,503,625	-		GFF3462	0.88	-1.0
3,503,659	+				-1.4
3,503,667	-				+1.0
3,503,728	+				-0.8
3,503,728	+				-1.3