Strain Fitness in Sphingobium sp. HT1-2 around GFF3413

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,454,160	-		GFF3410	0.81	-0.7
3,454,162	+		GFF3410	0.82	+0.3
3,454,162	+		GFF3410	0.82	-0.8
3,454,162	+		GFF3410	0.82	-0.2
3,454,162	+		GFF3410	0.82	+0.7
3,454,162	+		GFF3410	0.82	+0.8
3,454,162	+		GFF3410	0.82	-0.6
3,454,162	+		GFF3410	0.82	+0.6
3,454,170	-		GFF3410	0.86	+0.9
3,454,170	-		GFF3410	0.86	+0.1
3,454,170	-		GFF3410	0.86	-1.2
3,454,170	-		GFF3410	0.86	-0.5
3,454,170	-		GFF3410	0.86	-0.1
3,454,177	-				+0.6
3,454,177	-				+0.7
3,454,177	-				+1.1
3,454,185	+				+0.9
3,454,193	-				-0.4
3,454,207	+				-0.2
3,454,217	+				-1.3
3,454,217	+				-1.0
3,454,217	+				-1.3
3,454,225	+				-1.4
3,454,225	-				-1.1
3,454,225	-				-0.6
3,454,237	+		GFF3411	0.12	+1.0
3,454,238	-		GFF3411	0.12	+0.2
3,454,245	-		GFF3411	0.14	+0.6
3,454,284	+		GFF3411	0.25	-0.1
3,454,309	+		GFF3411	0.31	-1.4
3,454,317	-		GFF3411	0.34	-0.5
3,454,319	-		GFF3411	0.34	-0.4
3,454,322	-		GFF3411	0.35	-3.2
3,454,330	-		GFF3411	0.37	+1.6
3,454,348	+		GFF3411	0.42	+0.2
3,454,368	+		GFF3411	0.48	-0.8
3,454,407	+		GFF3411	0.58	+0.3
3,454,416	-		GFF3411	0.61	-1.2
3,454,435	+		GFF3411	0.66	-0.7
3,454,437	+		GFF3411	0.66	+0.7
3,454,440	+		GFF3411	0.67	+0.7
3,454,448	-		GFF3411	0.69	-0.4
3,454,448	-		GFF3411	0.69	+0.6
3,454,479	+		GFF3411	0.78	+0.6
3,454,479	+		GFF3411	0.78	-0.3
3,454,479	+		GFF3411	0.78	-1.2
3,454,479	+		GFF3411	0.78	+0.9
3,454,479	+		GFF3411	0.78	+0.8
3,454,495	-		GFF3411	0.82	+0.3
3,454,497	+		GFF3411	0.83	+0.6
3,454,497	+		GFF3411	0.83	-0.4
3,454,497	+		GFF3411	0.83	-3.1
3,454,497	+		GFF3411	0.83	+0.0
3,454,497	+		GFF3411	0.83	+0.6
3,454,505	-		GFF3411	0.85	-1.3
3,454,505	-		GFF3411	0.85	-1.4
3,454,505	-		GFF3411	0.85	+0.0
3,454,505	-		GFF3411	0.85	+0.1
3,454,505	-		GFF3411	0.85	+0.0
3,454,505	-		GFF3411	0.85	+0.9
3,454,505	-		GFF3411	0.85	-0.9
3,454,505	-		GFF3411	0.85	-0.5
3,454,505	-		GFF3411	0.85	-1.7
3,454,505	-		GFF3411	0.85	+0.0
3,454,505	-		GFF3411	0.85	-0.2
3,454,515	-		GFF3411	0.88	-0.4
3,454,515	-		GFF3411	0.88	+0.2
3,454,515	-		GFF3411	0.88	-1.7
3,454,517	+		GFF3411	0.88	-1.5
3,454,532	+				+1.0
3,454,532	+				-0.1
3,454,532	+				-2.2
3,454,532	+				+0.5
3,454,532	+				-0.3
3,454,532	+				-0.8
3,454,532	+				+0.7
3,454,532	+				-0.6
3,454,532	+				-2.0
3,454,532	+				-1.0
3,454,532	+				-2.2
3,454,532	+				-1.5
3,454,532	+				-1.7
3,454,532	+				+0.9
3,454,532	+				+0.8
3,454,532	+				-0.3
3,454,532	+				-1.5
3,454,532	+				-0.1
3,454,532	+				-0.3
3,454,532	+				-1.8
3,454,532	+				-0.8
3,454,532	+				-0.7
3,454,532	+				+0.9
3,454,537	+				+1.1
3,454,540	+				-1.4
3,454,540	-				-0.1
3,454,540	-				-1.7
3,454,540	-				+1.0
3,454,540	-				+0.2
3,454,540	-				-1.0
3,454,540	-				+0.4
3,454,540	-				+0.6
3,454,540	-				+0.1
3,454,540	-				-0.6
3,454,540	-				+0.5
3,454,540	-				+1.0
3,454,540	-				-0.8
3,454,540	-				+0.8
3,454,540	-				-1.2
3,454,540	-				+0.3
3,454,540	-				-1.2
3,454,540	-				-0.4
3,454,540	-				-0.8
3,454,540	-				-0.6
3,454,540	-				-3.1
3,454,540	-				+0.9
3,454,540	-				-1.6
3,454,540	-				-0.4
3,454,540	-				+0.0
3,454,540	-				+0.6
3,454,540	-				-2.2
3,454,540	-				+0.6
3,454,540	-				-1.4
3,454,540	-				+0.5
3,454,547	-				-1.4
3,454,547	-				-0.6
3,454,565	+				+0.3
3,454,573	-				+0.2
3,454,583	-				-0.4
3,454,584	+				-1.4
3,454,610	-		GFF3412	0.18	-1.7
3,454,610	-		GFF3412	0.18	+0.4
3,454,612	+		GFF3412	0.18	+0.2
3,454,612	+		GFF3412	0.18	-0.9
3,454,612	+		GFF3412	0.18	+1.0
3,454,612	+		GFF3412	0.18	-1.3
3,454,633	+		GFF3412	0.25	-1.3
3,454,634	+		GFF3412	0.26	-0.5
3,454,636	-		GFF3412	0.26	-0.9
3,454,636	-		GFF3412	0.26	+0.3
3,454,646	-		GFF3412	0.30	-1.0
3,454,646	-		GFF3412	0.30	-1.6
3,454,648	-		GFF3412	0.30	-0.5
3,454,651	+		GFF3412	0.31	-1.3
3,454,659	-		GFF3412	0.34	-1.9
3,454,661	+		GFF3412	0.35	+0.8
3,454,661	+		GFF3412	0.35	-1.9
3,454,661	+		GFF3412	0.35	-0.3
3,454,669	-		GFF3412	0.37	+1.0
3,454,671	+		GFF3412	0.38	+1.0
3,454,679	+		GFF3412	0.41	-0.2
3,454,679	+		GFF3412	0.41	+0.0
3,454,679	-		GFF3412	0.41	+0.0
3,454,686	+		GFF3412	0.43	-2.2
3,454,688	-		GFF3412	0.44	+0.4
3,454,689	+		GFF3412	0.44	-0.3
3,454,717	-		GFF3412	0.53	+0.3
3,454,718	+		GFF3412	0.53	-0.2
3,454,721	-		GFF3412	0.54	+1.0
3,454,731	-		GFF3412	0.58	+0.9
3,454,776	+		GFF3412	0.73	-1.7
3,454,827	-		GFF3412	0.89	-2.4
3,454,828	+				-0.2
3,454,828	+				+1.0
3,454,828	+				+1.7
3,454,828	+				+0.2
3,454,836	-				-1.3
3,454,836	-				-1.1
3,454,836	-				-0.2
3,454,836	-				+1.6
3,454,838	+				-0.4
3,454,838	+				-1.5
3,454,838	+				+0.7
3,454,846	-				-0.5
3,454,861	-				-0.0
3,454,880	-				-0.2
3,454,939	+				+0.7
3,454,939	+				-1.6
3,454,942	-				-1.6
3,454,944	+				-0.3
3,454,944	+				-0.1
3,454,944	+				-0.5
3,454,944	+				-0.6
3,454,944	+				-0.4
3,454,944	+				-0.9
3,454,952	-				+0.3
3,454,952	-				+0.0
3,454,954	+				+1.4
3,454,954	-				-0.1
3,454,962	-				+1.2
3,454,962	-				-0.1
3,454,964	+				-0.5
3,454,964	+				-1.1
3,454,964	+				-2.9
3,454,964	+				-0.7
3,454,972	-				+1.7
3,454,975	+				+0.2
3,454,983	-				-0.4
3,454,987	+				-1.8
3,454,991	+				+1.1
3,454,999	-				-1.6
3,454,999	-				-1.3
3,454,999	-				+0.4
3,455,005	-				+0.1
3,455,005	-				+0.5
3,455,010	+				-0.3
3,455,040	-				-1.5
3,455,053	+				-1.0
3,455,061	-				+0.4
3,455,079	-				-0.3
3,455,103	+				-0.8
3,455,132	-				+0.1
3,455,134	+				+0.4
3,455,134	+				-0.7
3,455,134	+				-0.1
3,455,134	+				-2.0
3,455,134	+				+0.4
3,455,134	+				-1.1
3,455,134	+				-0.9
3,455,134	+				-2.0
3,455,134	+				+0.2
3,455,134	+				+0.5
3,455,134	+				-0.8
3,455,134	+				-0.6
3,455,134	+				+1.1
3,455,134	+				+0.2
3,455,134	+				-0.1
3,455,134	+				-0.3
3,455,134	+				-1.9
3,455,134	+				-2.0
3,455,134	+				-0.0
3,455,134	+				+0.5
3,455,134	+				-1.0
3,455,134	+				+0.2
3,455,134	+				-1.2
3,455,134	+				+1.4
3,455,134	+				-2.6
3,455,134	+				-0.4
3,455,134	+				-1.4
3,455,134	+				-1.2
3,455,134	+				-0.6
3,455,134	+				+0.6
3,455,134	+				+0.3
3,455,134	+				-0.3
3,455,134	+				+1.0
3,455,134	+				-1.3
3,455,134	+				-0.5
3,455,134	+				+0.6
3,455,134	+				-1.3
3,455,134	+				-0.1
3,455,134	+				+0.9
3,455,134	+				+1.6
3,455,134	+				+0.4
3,455,134	+				-0.1
3,455,134	+				+0.2
3,455,134	+				-0.9
3,455,135	-				+0.5
3,455,142	-				+0.7
3,455,142	-				+1.2
3,455,142	-				+0.7
3,455,142	-				-2.7
3,455,142	-				-1.2
3,455,142	-				+0.3
3,455,142	-				+0.7
3,455,142	-				+0.1
3,455,142	-				-0.1
3,455,142	-				+0.6
3,455,142	-				+0.3
3,455,142	-				+1.1
3,455,142	-				+0.8
3,455,142	-				-1.6
3,455,142	-				+0.3
3,455,142	-				-0.8
3,455,142	-				+0.1
3,455,142	-				+0.4
3,455,142	-				-2.1
3,455,142	-				+0.7
3,455,142	-				-1.3
3,455,142	-				+0.7
3,455,142	-				-0.1
3,455,142	-				-0.4
3,455,142	-				-2.2
3,455,142	-				+0.7
3,455,142	-				+0.2
3,455,142	-				-0.4
3,455,142	-				-0.6
3,455,142	-				-0.8
3,455,142	-				-0.3
3,455,142	-				-2.1
3,455,142	-				-0.8
3,455,142	-				-0.4
3,455,142	-				+0.4
3,455,142	-				-2.3
3,455,142	-				-0.0
3,455,146	+				-0.5
3,455,204	+				-1.2
3,455,204	+				-0.7
3,455,209	+				-0.2
3,455,209	+				-1.4
3,455,212	-				-0.7
3,455,212	-				+0.2
3,455,212	-				+0.6
3,455,217	-				-0.5
3,455,217	-				-1.8
3,455,217	-				-0.7
3,455,217	-				-1.0
3,455,234	+				+1.0
3,455,234	+				-0.3
3,455,236	+				+0.6
3,455,236	+				-1.4
3,455,237	+				-0.3
3,455,237	+				+0.1
3,455,240	-				+0.5
3,455,242	-				-0.1
3,455,244	-				+0.0
3,455,251	+				+0.3
3,455,259	-				-1.8
3,455,276	-		GFF3413	0.10	+0.1
3,455,276	-		GFF3413	0.10	-1.8
3,455,290	-		GFF3413	0.12	+0.7
3,455,290	-		GFF3413	0.12	-1.1
3,455,290	-		GFF3413	0.12	-0.2
3,455,295	-		GFF3413	0.12	-0.1
3,455,318	+		GFF3413	0.14	-0.7
3,455,326	-		GFF3413	0.14	+0.3
3,455,346	-		GFF3413	0.16	-0.6
3,455,366	+		GFF3413	0.17	-1.0
3,455,375	-		GFF3413	0.18	-0.1
3,455,386	+		GFF3413	0.19	-2.1
3,455,394	-		GFF3413	0.19	-0.5
3,455,396	+		GFF3413	0.19	-0.4
3,455,409	+		GFF3413	0.20	+0.6
3,455,409	+		GFF3413	0.20	-0.6
3,455,459	+		GFF3413	0.24	-0.6
3,455,478	-		GFF3413	0.26	+0.2
3,455,482	+		GFF3413	0.26	-1.0
3,455,482	+		GFF3413	0.26	-0.4
3,455,490	-		GFF3413	0.27	-0.7
3,455,490	-		GFF3413	0.27	+0.6
3,455,495	+		GFF3413	0.27	-0.0
3,455,495	-		GFF3413	0.27	-0.4
3,455,517	+		GFF3413	0.29	-2.5
3,455,529	+		GFF3413	0.29	+0.7
3,455,529	+		GFF3413	0.29	-0.8
3,455,530	+		GFF3413	0.30	-0.6
3,455,530	+		GFF3413	0.30	+0.6
3,455,537	-		GFF3413	0.30	+0.9
3,455,546	-		GFF3413	0.31	+0.4
3,455,546	-		GFF3413	0.31	-0.7
3,455,546	-		GFF3413	0.31	-2.1
3,455,556	+		GFF3413	0.32	+0.8
3,455,579	-		GFF3413	0.33	-0.1
3,455,613	+		GFF3413	0.36	-0.7
3,455,618	+		GFF3413	0.36	+1.0
3,455,621	-		GFF3413	0.36	+1.0
3,455,627	-		GFF3413	0.37	+1.0
3,455,638	-		GFF3413	0.38	-0.7
3,455,651	-		GFF3413	0.39	-1.9
3,455,691	-		GFF3413	0.42	-2.0
3,455,729	+		GFF3413	0.45	-0.1
3,455,731	+		GFF3413	0.45	+0.0
3,455,737	+		GFF3413	0.45	+1.1
3,455,744	-		GFF3413	0.46	-0.8
3,455,865	+		GFF3413	0.55	-2.9
3,455,865	+		GFF3413	0.55	-0.9
3,455,867	-		GFF3413	0.55	+0.4
3,455,873	-		GFF3413	0.55	+0.4
3,455,875	-		GFF3413	0.56	+1.2
3,455,902	-		GFF3413	0.58	-0.8
3,455,902	-		GFF3413	0.58	-2.2
3,455,933	+		GFF3413	0.60	-1.5
3,455,933	+		GFF3413	0.60	+0.7
3,455,933	+		GFF3413	0.60	-1.4
3,455,933	+		GFF3413	0.60	-1.3
3,455,933	+		GFF3413	0.60	-1.0
3,455,933	+		GFF3413	0.60	-0.2
3,455,933	+		GFF3413	0.60	-1.2
3,455,936	-		GFF3413	0.60	+0.7
3,455,941	-		GFF3413	0.60	-1.6
3,455,941	-		GFF3413	0.60	-0.6
3,455,941	-		GFF3413	0.60	+0.5
3,455,941	-		GFF3413	0.60	-1.0
3,455,941	-		GFF3413	0.60	-1.2
3,455,941	-		GFF3413	0.60	-0.6
3,455,941	-		GFF3413	0.60	+1.4
3,455,941	-		GFF3413	0.60	+1.0
3,455,941	-		GFF3413	0.60	-0.1
3,455,960	-		GFF3413	0.62	-0.6
3,455,967	-		GFF3413	0.62	+0.8
3,455,974	+		GFF3413	0.63	-2.0
3,455,994	+		GFF3413	0.64	+0.1
3,455,999	+		GFF3413	0.65	-1.1
3,456,003	+		GFF3413	0.65	+0.2
3,456,021	-		GFF3413	0.67	+0.5
3,456,024	+		GFF3413	0.67	+0.2
3,456,030	-		GFF3413	0.67	+1.7
3,456,032	-		GFF3413	0.67	-0.1
3,456,032	-		GFF3413	0.67	+0.7
3,456,033	-		GFF3413	0.67	-1.1
3,456,035	-		GFF3413	0.68	-1.5
3,456,067	+		GFF3413	0.70	-0.4
3,456,067	+		GFF3413	0.70	-2.3
3,456,067	+		GFF3413	0.70	-1.4
3,456,067	+		GFF3413	0.70	-0.0
3,456,075	-		GFF3413	0.71	-1.0
3,456,109	-		GFF3413	0.73	-0.1
3,456,170	-		GFF3413	0.78	+0.5
3,456,199	+		GFF3413	0.80	-1.4
3,456,207	-		GFF3413	0.81	-0.4
3,456,207	-		GFF3413	0.81	-0.3
3,456,218	+		GFF3413	0.81	-0.7
3,456,218	+		GFF3413	0.81	-1.3
3,456,218	+		GFF3413	0.81	-1.1
3,456,226	-		GFF3413	0.82	-0.6
3,456,249	+		GFF3413	0.84	-1.6
3,456,251	+		GFF3413	0.84	-2.2
3,456,257	-		GFF3413	0.84	-0.0
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