Strain Fitness in Sphingobium sp. HT1-2 around GFF3375

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,417,660	-		GFF3373	0.70	+0.1
3,417,697	-		GFF3373	0.73	-0.0
3,417,707	+		GFF3373	0.74	+1.0
3,417,707	-		GFF3373	0.74	-0.6
3,417,780	+		GFF3373	0.79	+0.5
3,417,788	-		GFF3373	0.79	-0.8
3,417,795	+		GFF3373	0.80	+1.5
3,417,795	+		GFF3373	0.80	+0.2
3,417,801	-		GFF3373	0.80	+0.8
3,417,803	+		GFF3373	0.80	+0.6
3,417,813	-		GFF3373	0.81	+1.1
3,417,849	+		GFF3373	0.83	+0.0
3,417,852	+		GFF3373	0.84	+0.4
3,417,852	+		GFF3373	0.84	+0.4
3,417,852	+		GFF3373	0.84	+0.2
3,417,860	-		GFF3373	0.84	+0.3
3,417,869	+		GFF3373	0.85	+0.2
3,417,869	+		GFF3373	0.85	-1.5
3,417,877	-		GFF3373	0.85	+0.2
3,417,877	-		GFF3373	0.85	+1.0
3,417,877	-		GFF3373	0.85	-1.9
3,417,877	-		GFF3373	0.85	-2.0
3,417,894	-		GFF3373	0.86	-0.0
3,417,921	+		GFF3373	0.88	+0.9
3,417,938	+		GFF3373	0.89	-0.5
3,417,938	+		GFF3373	0.89	+0.2
3,417,946	-				-0.8
3,417,953	+				-1.0
3,417,953	+				+1.3
3,417,953	+				+0.0
3,417,953	+				+1.6
3,417,953	+				-0.0
3,417,953	+				+0.4
3,417,953	+				+0.3
3,417,953	+				+0.9
3,417,953	+				-0.2
3,417,961	-				-0.3
3,417,961	-				+0.3
3,417,961	-				-0.6
3,417,961	-				+0.9
3,417,961	-				-0.1
3,417,961	-				+0.2
3,417,961	-				-0.7
3,417,961	-				-0.3
3,417,961	-				-0.2
3,417,961	-				-0.6
3,417,999	+				+0.0
3,418,007	-				+0.4
3,418,029	-				+1.0
3,418,039	+				+0.8
3,418,051	+				+1.0
3,418,059	-				-2.3
3,418,084	+				+0.7
3,418,092	-				-0.9
3,418,092	-				+0.6
3,418,094	+				+0.3
3,418,094	+				-0.1
3,418,094	+				-0.4
3,418,102	-				+0.9
3,418,117	+				+1.0
3,418,120	-				+0.4
3,418,141	-				+0.9
3,418,179	+				-0.2
3,418,187	-				-0.3
3,418,199	+				+0.9
3,418,199	+				-0.2
3,418,199	+				+0.1
3,418,199	+				+0.5
3,418,199	+				+0.3
3,418,199	+				-0.4
3,418,199	+				+1.3
3,418,199	+				+0.9
3,418,200	+				+1.6
3,418,200	+				+0.0
3,418,200	+				+1.0
3,418,201	+				+0.5
3,418,207	-				+0.4
3,418,207	-				+0.8
3,418,207	-				-1.0
3,418,208	-				-1.6
3,418,208	-				-2.0
3,418,208	-				+1.2
3,418,208	-				+1.9
3,418,208	-				-0.6
3,418,208	-				+1.3
3,418,208	-				+0.5
3,418,221	+				+0.9
3,418,229	-				+0.4
3,418,248	-				-0.0
3,418,260	+				+0.1
3,418,268	-				-1.4
3,418,272	+				+0.0
3,418,272	+				+0.3
3,418,275	-				+1.5
3,418,277	+				+0.2
3,418,282	+				-0.3
3,418,282	+				+1.1
3,418,282	+				+1.2
3,418,287	+				+1.5
3,418,294	-				+1.3
3,418,296	-				-0.6
3,418,297	-				+0.6
3,418,301	+				+1.5
3,418,309	-				-1.7
3,418,314	-				+1.1
3,418,333	+				+0.5
3,418,333	+				+0.1
3,418,336	-				+0.8
3,418,341	-				+0.4
3,418,341	-				+2.0
3,418,368	-				+1.2
3,418,434	+		GFF3374	0.11	-2.1
3,418,448	-		GFF3374	0.16	-0.7
3,418,449	-		GFF3374	0.17	-0.4
3,418,459	-		GFF3374	0.21	-0.3
3,418,487	+		GFF3374	0.32	-1.6
3,418,505	-		GFF3374	0.39	-0.8
3,418,507	+		GFF3374	0.40	+1.1
3,418,508	+		GFF3374	0.41	-1.5
3,418,517	-		GFF3374	0.44	+0.1
3,418,517	-		GFF3374	0.44	-0.9
3,418,529	-		GFF3374	0.49	+0.9
3,418,529	-		GFF3374	0.49	+0.7
3,418,534	+		GFF3374	0.51	-0.1
3,418,534	+		GFF3374	0.51	-0.2
3,418,553	+		GFF3374	0.59	-0.5
3,418,559	-		GFF3374	0.61	+0.5
3,418,559	-		GFF3374	0.61	-1.2
3,418,571	+		GFF3374	0.66	-0.3
3,418,588	+		GFF3374	0.73	+0.3
3,418,615	+		GFF3374	0.84	-0.0
3,418,659	-				-0.6
3,418,669	+				+0.0
3,418,674	+				-0.1
3,418,700	+				+0.3
3,418,713	-				-0.1
3,418,742	-		GFF3375	0.11	+0.1
3,418,742	-		GFF3375	0.11	+1.7
3,418,742	-		GFF3375	0.11	-0.1
3,418,742	-		GFF3375	0.11	+0.5
3,418,747	+		GFF3375	0.12	+1.5
3,418,747	-		GFF3375	0.12	-1.3
3,418,755	-		GFF3375	0.13	+2.0
3,418,758	+		GFF3375	0.13	-0.2
3,418,766	-		GFF3375	0.14	-1.0
3,418,817	+		GFF3375	0.20	+0.7
3,418,837	+		GFF3375	0.23	-0.3
3,418,842	+		GFF3375	0.23	+0.2
3,418,842	+		GFF3375	0.23	-0.5
3,418,842	+		GFF3375	0.23	+0.6
3,418,842	+		GFF3375	0.23	+0.3
3,418,842	+		GFF3375	0.23	+0.4
3,418,847	+		GFF3375	0.24	+1.0
3,418,855	-		GFF3375	0.25	+1.6
3,418,855	-		GFF3375	0.25	+1.1
3,418,855	-		GFF3375	0.25	+1.1
3,418,855	-		GFF3375	0.25	-0.3
3,418,855	-		GFF3375	0.25	+0.2
3,418,866	+		GFF3375	0.26	+0.2
3,418,872	+		GFF3375	0.27	+0.2
3,418,874	-		GFF3375	0.27	+1.1
3,418,876	+		GFF3375	0.28	+0.1
3,418,876	+		GFF3375	0.28	+0.9
3,418,880	-		GFF3375	0.28	+1.2
3,418,880	-		GFF3375	0.28	+0.6
3,418,884	-		GFF3375	0.29	+1.5
3,418,884	-		GFF3375	0.29	+0.0
3,418,884	-		GFF3375	0.29	-0.5
3,418,901	+		GFF3375	0.31	-1.6
3,418,920	+		GFF3375	0.33	-0.1
3,418,933	+		GFF3375	0.35	+0.6
3,418,939	-		GFF3375	0.35	-0.2
3,418,953	+		GFF3375	0.37	-1.5
3,418,970	+		GFF3375	0.39	+0.6
3,418,975	+		GFF3375	0.40	-0.3
3,418,994	+		GFF3375	0.42	-0.0
3,418,996	-		GFF3375	0.42	+0.3
3,419,014	+		GFF3375	0.45	+1.5
3,419,049	+		GFF3375	0.49	-1.5
3,419,049	+		GFF3375	0.49	+0.5
3,419,051	+		GFF3375	0.49	-0.2
3,419,069	-		GFF3375	0.51	+0.3
3,419,069	-		GFF3375	0.51	-1.7
3,419,069	-		GFF3375	0.51	+0.2
3,419,069	-		GFF3375	0.51	-0.9
3,419,079	-		GFF3375	0.53	-0.7
3,419,080	+		GFF3375	0.53	-1.1
3,419,080	+		GFF3375	0.53	+0.2
3,419,088	-		GFF3375	0.54	+0.4
3,419,093	+		GFF3375	0.54	+0.8
3,419,093	+		GFF3375	0.54	+0.1
3,419,093	+		GFF3375	0.54	-1.2
3,419,101	-		GFF3375	0.55	-1.2
3,419,101	-		GFF3375	0.55	+0.1
3,419,101	-		GFF3375	0.55	+0.1
3,419,101	-		GFF3375	0.55	-0.6
3,419,101	-		GFF3375	0.55	+1.0
3,419,109	+		GFF3375	0.56	-2.1
3,419,109	+		GFF3375	0.56	-2.1
3,419,109	+		GFF3375	0.56	+1.0
3,419,117	-		GFF3375	0.57	-0.3
3,419,117	-		GFF3375	0.57	+1.2
3,419,143	+		GFF3375	0.61	+0.6
3,419,143	+		GFF3375	0.61	+1.5
3,419,151	-		GFF3375	0.62	-0.7
3,419,151	-		GFF3375	0.62	-0.3
3,419,151	-		GFF3375	0.62	+0.3
3,419,151	-		GFF3375	0.62	+0.4
3,419,153	+		GFF3375	0.62	+0.6
3,419,161	-		GFF3375	0.63	+0.7
3,419,184	+		GFF3375	0.66	+0.7
3,419,195	-		GFF3375	0.67	+0.2
3,419,195	-		GFF3375	0.67	-0.5
3,419,195	-		GFF3375	0.67	+0.2
3,419,218	-		GFF3375	0.70	+0.1
3,419,266	+		GFF3375	0.76	+0.8
3,419,302	+		GFF3375	0.80	-1.3
3,419,308	+		GFF3375	0.81	+0.9
3,419,308	+		GFF3375	0.81	-0.7
3,419,310	-		GFF3375	0.81	-0.2
3,419,310	-		GFF3375	0.81	-1.1
3,419,310	-		GFF3375	0.81	+1.3
3,419,310	-		GFF3375	0.81	+0.2
3,419,316	-		GFF3375	0.82	-0.2
3,419,323	+		GFF3375	0.83	+1.6
3,419,348	+		GFF3375	0.86	-0.8
3,419,358	+		GFF3375	0.87	-0.2
3,419,369	+		GFF3375	0.89	-1.5
3,419,377	-		GFF3375	0.90	-0.3
3,419,379	+		GFF3375	0.90	+0.4
3,419,389	-				+0.2
3,419,421	+				-0.8
3,419,421	+				+1.1
3,419,421	+				+0.5
3,419,429	-				+0.3
3,419,465	+				+0.0
3,419,470	+				+1.3
3,419,497	+				+0.7
3,419,515	+				-0.5
3,419,520	+				-0.5
3,419,544	+		GFF3376	0.11	+0.8
3,419,557	+		GFF3376	0.14	-2.7
3,419,557	+		GFF3376	0.14	+0.2
3,419,557	+		GFF3376	0.14	+0.7
3,419,557	+		GFF3376	0.14	-0.7
3,419,558	+		GFF3376	0.14	-0.4
3,419,559	-		GFF3376	0.14	+1.4
3,419,565	-		GFF3376	0.15	+0.8
3,419,577	+		GFF3376	0.17	-0.3
3,419,587	-		GFF3376	0.18	-0.4
3,419,589	+		GFF3376	0.19	+0.9
3,419,597	-		GFF3376	0.20	+0.9
3,419,646	+		GFF3376	0.28	+0.0
3,419,646	+		GFF3376	0.28	+0.8
3,419,675	+		GFF3376	0.33	-0.8
3,419,675	+		GFF3376	0.33	+1.3
3,419,676	-		GFF3376	0.33	-0.4
3,419,683	-		GFF3376	0.34	+1.4
3,419,733	-		GFF3376	0.42	+0.6
3,419,771	+		GFF3376	0.48	+0.3
3,419,779	-		GFF3376	0.49	+0.3
3,419,782	+		GFF3376	0.50	-1.3
3,419,783	+		GFF3376	0.50	-1.6
3,419,790	-		GFF3376	0.51	-0.3
3,419,790	-		GFF3376	0.51	-0.2
3,419,800	+		GFF3376	0.53	+0.4
3,419,805	+		GFF3376	0.53	+1.0
3,419,810	+		GFF3376	0.54	-0.1
3,419,824	-		GFF3376	0.57	-0.3
3,419,828	+		GFF3376	0.57	+0.7
3,419,913	+		GFF3376	0.71	+1.1
3,419,913	+		GFF3376	0.71	+0.1
3,419,921	-		GFF3376	0.72	-0.7
3,419,921	-		GFF3376	0.72	+1.2
3,419,921	-		GFF3376	0.72	+0.6
3,419,947	+		GFF3376	0.76	+0.7
3,419,955	-		GFF3376	0.78	+0.8
3,419,986	+		GFF3376	0.83	-0.8
3,419,994	-		GFF3376	0.84	-0.5
3,419,994	-		GFF3376	0.84	+1.7
3,420,018	+		GFF3376	0.88	+0.2
3,420,022	+		GFF3376	0.88	+1.2
3,420,025	-		GFF3376	0.89	+0.3
3,420,051	+				-0.3
3,420,051	+				+0.2
3,420,056	+				+0.9
3,420,122	+				-0.9
3,420,122	+				+0.3
3,420,130	-				-0.4
3,420,181	-				-1.3
3,420,186	-				-0.6
3,420,186	-				-0.1
3,420,186	-				+1.6
3,420,216	-				-0.9
3,420,218	+				+2.1
3,420,218	+				+0.2
3,420,235	-				+0.6
3,420,236	-				+0.3
3,420,240	+				-0.7
3,420,253	-				+0.2
3,420,255	+				-0.8
3,420,263	-				-0.1
3,420,263	-				+0.0
3,420,263	-				-0.6
3,420,263	-				-0.6
3,420,278	+				+1.4
3,420,311	+				-0.1
3,420,311	+				-1.2
3,420,317	-				-0.3
3,420,319	-				-1.3
3,420,319	-				+0.3
3,420,332	+				+0.5
3,420,334	+		GFF3377	0.10	+0.2
3,420,334	+		GFF3377	0.10	-0.5
3,420,334	+		GFF3377	0.10	+0.7
3,420,334	+		GFF3377	0.10	+0.6
3,420,342	-		GFF3377	0.13	+0.5
3,420,342	-		GFF3377	0.13	+0.4
3,420,342	-		GFF3377	0.13	-1.0
3,420,342	-		GFF3377	0.13	+0.8
3,420,342	-		GFF3377	0.13	-0.6
3,420,351	+		GFF3377	0.16	+0.3
3,420,362	+		GFF3377	0.20	+0.2
3,420,365	-		GFF3377	0.21	-0.1
3,420,368	+		GFF3377	0.22	+0.5
3,420,370	-		GFF3377	0.22	-1.3
3,420,402	-		GFF3377	0.33	-0.5
3,420,415	+		GFF3377	0.37	-0.3
3,420,420	+		GFF3377	0.39	+1.0
3,420,425	+		GFF3377	0.40	-0.2