Strain Fitness in Sphingobium sp. HT1-2 around GFF3343

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,393,593	-		GFF3342	0.55	-1.3
3,393,595	+		GFF3342	0.55	-1.0
3,393,595	+		GFF3342	0.55	+0.5
3,393,603	-		GFF3342	0.56	+0.6
3,393,608	-		GFF3342	0.56	-0.7
3,393,616	+		GFF3342	0.56	+0.7
3,393,642	+		GFF3342	0.58	+0.4
3,393,642	+		GFF3342	0.58	-1.0
3,393,650	-		GFF3342	0.58	-0.6
3,393,652	+		GFF3342	0.58	+0.3
3,393,662	-		GFF3342	0.59	-1.3
3,393,681	+		GFF3342	0.60	+0.8
3,393,684	+		GFF3342	0.60	-0.1
3,393,689	-		GFF3342	0.60	+0.5
3,393,690	-		GFF3342	0.60	-1.5
3,393,692	-		GFF3342	0.61	+0.8
3,393,703	+		GFF3342	0.61	-2.2
3,393,703	+		GFF3342	0.61	+0.3
3,393,711	-		GFF3342	0.62	-1.4
3,393,743	+		GFF3342	0.63	-1.2
3,393,749	-		GFF3342	0.64	-0.4
3,393,791	-		GFF3342	0.66	-1.0
3,393,804	-		GFF3342	0.66	-0.2
3,393,805	+		GFF3342	0.67	-0.4
3,393,806	-		GFF3342	0.67	-0.7
3,393,806	-		GFF3342	0.67	+0.9
3,393,806	-		GFF3342	0.67	-2.4
3,393,819	-		GFF3342	0.67	-2.0
3,393,880	+		GFF3342	0.70	-0.9
3,393,884	+		GFF3342	0.71	-2.3
3,393,887	+		GFF3342	0.71	+0.4
3,393,894	-		GFF3342	0.71	+0.8
3,393,899	+		GFF3342	0.71	+0.2
3,393,901	+		GFF3342	0.72	-1.5
3,393,911	+		GFF3342	0.72	+0.0
3,393,929	+		GFF3342	0.73	-0.2
3,393,929	+		GFF3342	0.73	-0.4
3,393,929	+		GFF3342	0.73	-1.8
3,393,929	+		GFF3342	0.73	-1.8
3,393,929	+		GFF3342	0.73	+0.3
3,393,929	+		GFF3342	0.73	+1.2
3,393,937	-		GFF3342	0.74	-0.2
3,393,937	-		GFF3342	0.74	-0.9
3,393,950	+		GFF3342	0.74	-0.1
3,393,958	-		GFF3342	0.75	-0.6
3,393,978	-		GFF3342	0.76	-0.1
3,393,980	+		GFF3342	0.76	-0.0
3,393,988	-		GFF3342	0.76	+0.1
3,393,988	-		GFF3342	0.76	+0.9
3,394,029	-		GFF3342	0.78	-1.2
3,394,029	-		GFF3342	0.78	-0.6
3,394,031	+		GFF3342	0.78	-0.2
3,394,031	+		GFF3342	0.78	-0.5
3,394,039	-		GFF3342	0.79	+0.1
3,394,039	-		GFF3342	0.79	-0.5
3,394,039	-		GFF3342	0.79	-1.8
3,394,039	-		GFF3342	0.79	-0.0
3,394,039	-		GFF3342	0.79	-1.1
3,394,039	-		GFF3342	0.79	-1.2
3,394,039	-		GFF3342	0.79	+0.2
3,394,039	-		GFF3342	0.79	-0.2
3,394,041	+		GFF3342	0.79	+0.6
3,394,041	+		GFF3342	0.79	+0.9
3,394,043	+		GFF3342	0.79	-0.6
3,394,049	-		GFF3342	0.79	-0.2
3,394,051	+		GFF3342	0.80	+0.4
3,394,051	-		GFF3342	0.80	-2.2
3,394,067	-		GFF3342	0.80	-1.5
3,394,067	-		GFF3342	0.80	-1.5
3,394,093	+		GFF3342	0.82	-0.1
3,394,093	+		GFF3342	0.82	-1.4
3,394,093	+		GFF3342	0.82	-0.3
3,394,093	+		GFF3342	0.82	-2.0
3,394,098	+		GFF3342	0.82	+0.5
3,394,101	-		GFF3342	0.82	+0.1
3,394,101	-		GFF3342	0.82	-0.3
3,394,101	-		GFF3342	0.82	+0.7
3,394,103	+		GFF3342	0.82	-2.0
3,394,106	-		GFF3342	0.82	+0.5
3,394,106	-		GFF3342	0.82	+0.0
3,394,114	+		GFF3342	0.83	-0.4
3,394,114	+		GFF3342	0.83	-2.0
3,394,122	-		GFF3342	0.83	-2.2
3,394,140	-		GFF3342	0.84	-0.6
3,394,178	-		GFF3342	0.86	-0.5
3,394,199	+		GFF3342	0.87	-0.7
3,394,207	-		GFF3342	0.88	-2.5
3,394,211	+		GFF3342	0.88	-1.2
3,394,211	-		GFF3342	0.88	-0.1
3,394,217	+		GFF3342	0.88	+0.4
3,394,218	-		GFF3342	0.88	-1.0
3,394,219	-		GFF3342	0.88	+0.1
3,394,219	-		GFF3342	0.88	-0.7
3,394,242	+		GFF3342	0.90	+0.7
3,394,286	+				-1.8
3,394,294	+				+0.2
3,394,314	+				+1.0
3,394,322	-				-2.2
3,394,322	-				-0.7
3,394,354	+				-0.2
3,394,355	+				-0.9
3,394,365	+				-1.0
3,394,365	+				-1.1
3,394,373	-				-0.2
3,394,381	+				-2.5
3,394,389	-				+0.2
3,394,398	+				+0.1
3,394,398	+				-1.7
3,394,435	-				+1.0
3,394,441	+				+0.1
3,394,454	-				-1.7
3,394,457	-				-1.4
3,394,481	+				-1.9
3,394,489	-				-1.7
3,394,499	+				-1.3
3,394,499	+				+0.6
3,394,499	+				+0.2
3,394,504	+				-0.1
3,394,515	+				-0.1
3,394,534	+				+1.1
3,394,559	+				+0.3
3,394,574	+				+0.2
3,394,582	-				-1.8
3,394,584	+				-0.7
3,394,584	+				+0.1
3,394,584	+				-2.0
3,394,584	+				-2.3
3,394,592	-				-1.0
3,394,592	-				-0.8
3,394,592	-				+1.4
3,394,592	-				-0.2
3,394,592	-				-0.1
3,394,592	-				+0.8
3,394,592	-				-0.1
3,394,596	+				+0.5
3,394,596	+				-0.1
3,394,596	+				-1.6
3,394,596	+				-0.2
3,394,596	+				-0.0
3,394,596	+				-0.0
3,394,596	+				-2.6
3,394,601	+				-1.5
3,394,604	-				+0.6
3,394,604	-				+0.1
3,394,604	-				-0.7
3,394,632	+		GFF3343	0.13	+0.6
3,394,640	-		GFF3343	0.15	-0.1
3,394,648	+		GFF3343	0.17	-0.4
3,394,649	-		GFF3343	0.17	-2.6
3,394,677	+		GFF3343	0.25	+0.7
3,394,677	+		GFF3343	0.25	+0.1
3,394,687	+		GFF3343	0.28	+0.0
3,394,705	-		GFF3343	0.33	+0.8
3,394,720	-		GFF3343	0.37	+0.3
3,394,740	+		GFF3343	0.42	+0.8
3,394,740	+		GFF3343	0.42	-0.4
3,394,741	-		GFF3343	0.43	-0.9
3,394,741	-		GFF3343	0.43	-0.4
3,394,742	-		GFF3343	0.43	+0.6
3,394,748	-		GFF3343	0.45	+0.9
3,394,759	+		GFF3343	0.48	-2.0
3,394,759	+		GFF3343	0.48	-1.7
3,394,759	+		GFF3343	0.48	-0.4
3,394,759	+		GFF3343	0.48	-0.4
3,394,762	-		GFF3343	0.48	+1.2
3,394,767	-		GFF3343	0.50	+1.2
3,394,767	-		GFF3343	0.50	-2.0
3,394,767	-		GFF3343	0.50	+0.1
3,394,767	-		GFF3343	0.50	-0.6
3,394,767	-		GFF3343	0.50	+0.9
3,394,767	-		GFF3343	0.50	-0.7
3,394,767	-		GFF3343	0.50	-0.4
3,394,767	-		GFF3343	0.50	-0.5
3,394,767	-		GFF3343	0.50	-0.3
3,394,786	-		GFF3343	0.55	+0.5
3,394,786	-		GFF3343	0.55	-1.3
3,394,786	-		GFF3343	0.55	-0.5
3,394,794	+		GFF3343	0.57	-1.4
3,394,802	-		GFF3343	0.60	-0.4
3,394,804	+		GFF3343	0.60	+0.6
3,394,837	-		GFF3343	0.69	+0.6
3,394,864	+		GFF3343	0.77	+0.2
3,394,864	+		GFF3343	0.77	+0.2
3,394,864	+		GFF3343	0.77	-0.8
3,394,864	+		GFF3343	0.77	+0.2
3,394,864	+		GFF3343	0.77	-0.2
3,394,864	+		GFF3343	0.77	-0.7
3,394,872	-		GFF3343	0.79	-1.3
3,394,872	-		GFF3343	0.79	+1.0
3,394,872	-		GFF3343	0.79	-1.3
3,394,971	+				+0.1
3,394,973	+				+0.7
3,394,974	+				-0.8
3,394,979	-				+1.0
3,394,981	-				-1.1
3,394,986	+				+0.7
3,394,993	-				-1.1
3,395,098	-		GFF3344	0.28	-1.3
3,395,100	+		GFF3344	0.29	-2.6
3,395,108	-		GFF3344	0.32	-0.2
3,395,114	+		GFF3344	0.34	-0.7
3,395,136	+		GFF3344	0.41	-2.2
3,395,147	+		GFF3344	0.45	-1.5
3,395,158	-		GFF3344	0.49	+1.6
3,395,175	-		GFF3344	0.55	-1.8
3,395,175	-		GFF3344	0.55	+0.4
3,395,197	+		GFF3344	0.62	-2.4
3,395,197	+		GFF3344	0.62	+0.8
3,395,197	+		GFF3344	0.62	-1.2
3,395,197	+		GFF3344	0.62	-1.9
3,395,197	+		GFF3344	0.62	-0.4
3,395,197	+		GFF3344	0.62	+0.7
3,395,197	+		GFF3344	0.62	-1.6
3,395,197	+		GFF3344	0.62	-0.4
3,395,197	+		GFF3344	0.62	-2.6
3,395,205	-		GFF3344	0.65	-1.3
3,395,205	-		GFF3344	0.65	+1.0
3,395,205	-		GFF3344	0.65	-0.4
3,395,205	-		GFF3344	0.65	+0.1
3,395,205	-		GFF3344	0.65	-0.3
3,395,205	-		GFF3344	0.65	-0.0
3,395,205	-		GFF3344	0.65	-1.0
3,395,205	-		GFF3344	0.65	-0.2
3,395,205	-		GFF3344	0.65	-2.2
3,395,215	+		GFF3344	0.69	-0.9
3,395,240	+		GFF3344	0.77	-1.0
3,395,240	+		GFF3344	0.77	+0.8
3,395,248	-		GFF3344	0.80	-0.8
3,395,251	+		GFF3344	0.81	+0.5
3,395,251	+		GFF3344	0.81	-1.4
3,395,251	+		GFF3344	0.81	+1.3
3,395,277	-				+1.1
3,395,300	+				+0.4
3,395,305	+				+0.0
3,395,305	+				+0.3
3,395,315	+				-1.5
3,395,317	+				-0.3
3,395,323	-				-1.3
3,395,323	-				-0.4
3,395,327	-				-0.0
3,395,337	+				-0.9
3,395,337	+				+1.8
3,395,345	+				+0.2
3,395,353	-				-0.6
3,395,360	-				-1.6
3,395,391	-		GFF3345	0.14	-2.2
3,395,391	-		GFF3345	0.14	+0.4
3,395,441	+		GFF3345	0.21	-2.7
3,395,441	+		GFF3345	0.21	-0.2
3,395,449	-		GFF3345	0.23	-0.2
3,395,471	+		GFF3345	0.26	+0.6
3,395,471	+		GFF3345	0.26	-2.4
3,395,472	+		GFF3345	0.26	-0.5
3,395,480	-		GFF3345	0.27	+1.0
3,395,480	-		GFF3345	0.27	-0.0
3,395,480	-		GFF3345	0.27	+1.0
3,395,484	-		GFF3345	0.28	+0.5
3,395,503	+		GFF3345	0.31	+0.6
3,395,520	+		GFF3345	0.33	-0.4
3,395,538	+		GFF3345	0.36	-0.5
3,395,544	+		GFF3345	0.37	+0.3
3,395,549	+		GFF3345	0.38	-1.7
3,395,552	-		GFF3345	0.38	-1.7
3,395,552	-		GFF3345	0.38	-0.9
3,395,552	-		GFF3345	0.38	-2.1
3,395,552	-		GFF3345	0.38	-2.1
3,395,557	-		GFF3345	0.39	-0.4
3,395,562	-		GFF3345	0.40	+0.2
3,395,562	-		GFF3345	0.40	-0.9
3,395,566	-		GFF3345	0.40	+0.5
3,395,573	+		GFF3345	0.41	+0.1
3,395,580	+		GFF3345	0.42	+0.6
3,395,583	-		GFF3345	0.43	-0.7
3,395,583	-		GFF3345	0.43	+0.0
3,395,588	-		GFF3345	0.44	+0.4
3,395,588	-		GFF3345	0.44	+0.3
3,395,588	-		GFF3345	0.44	+0.6
3,395,588	-		GFF3345	0.44	-0.3
3,395,588	-		GFF3345	0.44	-0.7
3,395,607	+		GFF3345	0.47	-0.5
3,395,617	+		GFF3345	0.48	-2.0
3,395,617	+		GFF3345	0.48	-0.1
3,395,617	+		GFF3345	0.48	+1.2
3,395,640	+		GFF3345	0.52	+0.7
3,395,640	+		GFF3345	0.52	-0.3
3,395,640	+		GFF3345	0.52	-0.1
3,395,641	+		GFF3345	0.52	-0.5
3,395,645	+		GFF3345	0.52	-0.9
3,395,648	-		GFF3345	0.53	-1.3
3,395,648	-		GFF3345	0.53	-1.1
3,395,648	-		GFF3345	0.53	+1.6
3,395,649	-		GFF3345	0.53	-1.4
3,395,667	-		GFF3345	0.56	-0.2
3,395,698	-		GFF3345	0.60	-0.6
3,395,698	-		GFF3345	0.60	-0.6
3,395,698	-		GFF3345	0.60	-0.2
3,395,700	-		GFF3345	0.61	-0.7
3,395,703	+		GFF3345	0.61	-1.7
3,395,719	+		GFF3345	0.64	-2.3
3,395,725	-		GFF3345	0.65	-1.5
3,395,727	+		GFF3345	0.65	-0.2
3,395,727	-		GFF3345	0.65	+0.1
3,395,727	-		GFF3345	0.65	-0.7
3,395,729	+		GFF3345	0.65	-0.2
3,395,729	+		GFF3345	0.65	-0.3
3,395,737	-		GFF3345	0.66	-0.1
3,395,737	-		GFF3345	0.66	-0.4
3,395,752	-		GFF3345	0.69	-0.6
3,395,782	+		GFF3345	0.73	+0.1
3,395,803	-		GFF3345	0.76	+0.4
3,395,836	-		GFF3345	0.81	-1.9
3,395,841	+		GFF3345	0.82	-0.3
3,395,873	-		GFF3345	0.87	-0.7
3,395,893	+				+0.0
3,395,911	+				-0.5
3,395,912	+				-2.4
3,395,934	+				-0.5
3,395,934	+				-1.6
3,395,942	-				+0.5
3,395,942	-				-0.7
3,395,947	-				-1.1