Strain Fitness in Sphingobium sp. HT1-2 around GFF3281

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,334,484	+		GFF3280	0.35	+0.6
3,334,492	-		GFF3280	0.35	-0.2
3,334,492	-		GFF3280	0.35	-1.2
3,334,492	-		GFF3280	0.35	-0.1
3,334,492	-		GFF3280	0.35	+0.4
3,334,499	-		GFF3280	0.36	-0.7
3,334,504	+		GFF3280	0.36	-0.6
3,334,504	+		GFF3280	0.36	+1.1
3,334,507	-		GFF3280	0.36	-0.3
3,334,512	-		GFF3280	0.37	+0.7
3,334,521	+		GFF3280	0.37	-0.6
3,334,521	+		GFF3280	0.37	-0.3
3,334,529	-		GFF3280	0.38	-1.5
3,334,529	-		GFF3280	0.38	-0.4
3,334,539	+		GFF3280	0.39	-0.7
3,334,547	-		GFF3280	0.39	+0.0
3,334,571	+		GFF3280	0.41	-1.5
3,334,576	+		GFF3280	0.41	-0.4
3,334,579	-		GFF3280	0.41	+0.1
3,334,579	-		GFF3280	0.41	-0.2
3,334,579	-		GFF3280	0.41	-0.9
3,334,579	-		GFF3280	0.41	+0.0
3,334,591	+		GFF3280	0.42	+0.2
3,334,608	-		GFF3280	0.43	-0.5
3,334,633	-		GFF3280	0.45	-0.1
3,334,662	+		GFF3280	0.47	-0.9
3,334,684	+		GFF3280	0.48	-0.8
3,334,684	+		GFF3280	0.48	-0.7
3,334,684	+		GFF3280	0.48	+0.0
3,334,684	+		GFF3280	0.48	+0.0
3,334,684	+		GFF3280	0.48	-1.0
3,334,684	+		GFF3280	0.48	+0.7
3,334,684	+		GFF3280	0.48	-0.2
3,334,692	-		GFF3280	0.49	-2.0
3,334,692	-		GFF3280	0.49	-0.9
3,334,692	-		GFF3280	0.49	-0.2
3,334,692	-		GFF3280	0.49	+0.7
3,334,692	-		GFF3280	0.49	-1.8
3,334,692	-		GFF3280	0.49	-1.9
3,334,692	-		GFF3280	0.49	-2.0
3,334,692	-		GFF3280	0.49	+0.6
3,334,692	-		GFF3280	0.49	-2.0
3,334,703	+		GFF3280	0.49	-0.3
3,334,703	+		GFF3280	0.49	-2.0
3,334,703	+		GFF3280	0.49	+0.2
3,334,703	+		GFF3280	0.49	+0.4
3,334,703	+		GFF3280	0.49	+0.2
3,334,703	+		GFF3280	0.49	-2.3
3,334,704	+		GFF3280	0.49	-2.2
3,334,711	-		GFF3280	0.50	-1.2
3,334,718	+		GFF3280	0.50	-0.0
3,334,726	-		GFF3280	0.51	+0.3
3,334,726	-		GFF3280	0.51	-1.4
3,334,726	-		GFF3280	0.51	-2.0
3,334,778	+		GFF3280	0.54	+0.6
3,334,782	-		GFF3280	0.54	-0.4
3,334,826	+		GFF3280	0.57	-1.3
3,334,826	+		GFF3280	0.57	-0.9
3,334,826	+		GFF3280	0.57	-0.2
3,334,826	+		GFF3280	0.57	+0.2
3,334,826	+		GFF3280	0.57	-0.4
3,334,828	+		GFF3280	0.57	-0.2
3,334,834	-		GFF3280	0.58	+0.1
3,334,836	-		GFF3280	0.58	-1.8
3,334,836	-		GFF3280	0.58	+0.3
3,334,868	+		GFF3280	0.60	+0.2
3,334,868	+		GFF3280	0.60	+0.6
3,334,876	+		GFF3280	0.61	-0.7
3,334,884	-		GFF3280	0.61	-1.4
3,334,904	+		GFF3280	0.62	-0.9
3,334,927	+		GFF3280	0.64	+0.6
3,334,943	+		GFF3280	0.65	-1.3
3,334,944	+		GFF3280	0.65	-0.6
3,334,944	+		GFF3280	0.65	-0.0
3,334,950	-		GFF3280	0.65	-0.3
3,334,952	-		GFF3280	0.66	-0.1
3,334,952	-		GFF3280	0.66	+1.0
3,334,952	-		GFF3280	0.66	+1.2
3,334,952	-		GFF3280	0.66	-0.2
3,334,957	-		GFF3280	0.66	-1.7
3,334,966	-		GFF3280	0.66	+0.6
3,334,991	-		GFF3280	0.68	-1.3
3,335,035	-		GFF3280	0.71	+0.8
3,335,068	+		GFF3280	0.73	+0.6
3,335,095	-		GFF3280	0.75	-0.1
3,335,101	-		GFF3280	0.75	+0.5
3,335,107	+		GFF3280	0.76	-2.0
3,335,107	+		GFF3280	0.76	-0.5
3,335,107	+		GFF3280	0.76	-0.4
3,335,115	-		GFF3280	0.76	-0.3
3,335,115	-		GFF3280	0.76	-0.5
3,335,115	-		GFF3280	0.76	-2.1
3,335,117	+		GFF3280	0.76	+1.0
3,335,117	+		GFF3280	0.76	+0.1
3,335,117	+		GFF3280	0.76	-1.9
3,335,120	-		GFF3280	0.77	-0.8
3,335,120	-		GFF3280	0.77	+0.1
3,335,125	-		GFF3280	0.77	-0.2
3,335,125	-		GFF3280	0.77	-2.0
3,335,125	-		GFF3280	0.77	+0.2
3,335,133	+		GFF3280	0.77	-0.8
3,335,133	+		GFF3280	0.77	-0.2
3,335,170	+		GFF3280	0.80	+0.5
3,335,222	+		GFF3280	0.83	+1.5
3,335,257	+		GFF3280	0.86	+0.1
3,335,265	+		GFF3280	0.86	+0.5
3,335,265	+		GFF3280	0.86	+0.9
3,335,265	+		GFF3280	0.86	-0.6
3,335,265	+		GFF3280	0.86	-1.1
3,335,265	+		GFF3280	0.86	-1.4
3,335,291	-		GFF3280	0.88	-1.5
3,335,309	+		GFF3280	0.89	-0.8
3,335,317	-		GFF3280	0.89	-0.9
3,335,319	+		GFF3280	0.90	+1.1
3,335,327	+				-1.5
3,335,353	-				+1.2
3,335,354	+				+0.1
3,335,354	+				+0.9
3,335,354	+				-1.3
3,335,355	+				+0.2
3,335,362	-				-1.0
3,335,362	-				-1.2
3,335,362	-				-0.5
3,335,362	-				-0.3
3,335,403	+				-0.3
3,335,406	-				-0.0
3,335,413	+				-0.6
3,335,421	-				-2.5
3,335,421	-				-0.6
3,335,425	+				-0.5
3,335,425	+				-1.7
3,335,426	-				-1.2
3,335,430	+				-1.5
3,335,430	+				-0.5
3,335,438	-				+0.4
3,335,438	-				+0.8
3,335,438	-				+0.5
3,335,454	-				-0.7
3,335,462	+				+0.1
3,335,462	+				-1.5
3,335,463	-				-1.2
3,335,470	-				-0.9
3,335,470	-				-0.6
3,335,470	-				+0.8
3,335,484	+				+0.1
3,335,486	-				-0.8
3,335,507	-				+0.0
3,335,514	+				-0.9
3,335,540	-		GFF3281	0.14	+1.4
3,335,541	-		GFF3281	0.14	-2.8
3,335,541	-		GFF3281	0.14	-1.1
3,335,543	-		GFF3281	0.15	-0.2
3,335,554	+		GFF3281	0.17	-0.3
3,335,565	+		GFF3281	0.20	-1.2
3,335,575	+		GFF3281	0.22	-0.7
3,335,593	+		GFF3281	0.26	+0.6
3,335,602	+		GFF3281	0.29	+0.1
3,335,605	-		GFF3281	0.29	+0.6
3,335,605	-		GFF3281	0.29	-1.9
3,335,613	+		GFF3281	0.31	-0.9
3,335,613	+		GFF3281	0.31	-1.2
3,335,618	+		GFF3281	0.32	-0.4
3,335,618	+		GFF3281	0.32	+0.9
3,335,618	+		GFF3281	0.32	+0.2
3,335,618	+		GFF3281	0.32	+0.2
3,335,626	-		GFF3281	0.34	+0.7
3,335,626	-		GFF3281	0.34	+0.4
3,335,626	-		GFF3281	0.34	+0.1
3,335,626	-		GFF3281	0.34	-0.9
3,335,646	-		GFF3281	0.39	-0.6
3,335,660	+		GFF3281	0.42	+1.0
3,335,661	-		GFF3281	0.43	-0.5
3,335,665	+		GFF3281	0.44	-2.1
3,335,673	-		GFF3281	0.45	-2.1
3,335,695	+		GFF3281	0.51	+1.3
3,335,715	-		GFF3281	0.55	-1.5
3,335,720	+		GFF3281	0.57	+1.3
3,335,726	-		GFF3281	0.58	-2.1
3,335,728	-		GFF3281	0.59	+1.3
3,335,738	+		GFF3281	0.61	-0.2
3,335,747	+		GFF3281	0.63	-0.2
3,335,758	-		GFF3281	0.66	-1.9
3,335,765	-		GFF3281	0.67	+0.7
3,335,774	-		GFF3281	0.70	+0.2
3,335,786	-		GFF3281	0.72	-0.5
3,335,786	-		GFF3281	0.72	+1.3
3,335,807	+		GFF3281	0.77	+0.3
3,335,895	+				-1.0
3,335,895	+				+0.1
3,335,895	+				-0.1
3,335,895	+				+0.4
3,335,895	+				+0.2
3,335,897	+				-1.7
3,335,897	+				-0.1
3,335,897	+				-0.2
3,335,897	+				+1.4
3,335,903	-				+0.4
3,335,903	-				-0.8
3,335,903	-				-1.2
3,335,905	-				-0.2
3,335,905	-				-0.4
3,335,905	-				-1.2
3,335,905	-				+0.5
3,335,916	+				+0.2
3,335,916	+				-0.4
3,335,916	+				-0.1
3,335,924	-				+0.6
3,335,924	-				-0.0
3,335,939	-				-1.4
3,335,951	+				+0.5
3,335,959	-				-1.4
3,335,959	-				+1.0
3,336,023	+				-0.5
3,336,023	+				-0.7
3,336,031	-				-0.4
3,336,042	-				+0.3
3,336,055	+				-0.4
3,336,065	-		GFF3282	0.11	+0.2
3,336,084	+		GFF3282	0.12	-0.4
3,336,084	+		GFF3282	0.12	-0.2
3,336,087	-		GFF3282	0.12	-0.8
3,336,101	+		GFF3282	0.13	+1.0
3,336,101	+		GFF3282	0.13	-2.4
3,336,101	+		GFF3282	0.13	+1.8
3,336,101	+		GFF3282	0.13	-1.7
3,336,102	-		GFF3282	0.13	+0.4
3,336,109	-		GFF3282	0.13	-0.1
3,336,109	-		GFF3282	0.13	-0.4
3,336,109	-		GFF3282	0.13	+0.4
3,336,119	-		GFF3282	0.14	+1.2
3,336,140	+		GFF3282	0.15	+0.3
3,336,153	-		GFF3282	0.15	-0.4
3,336,164	+		GFF3282	0.16	+0.9
3,336,166	+		GFF3282	0.16	-0.5
3,336,166	+		GFF3282	0.16	+0.8
3,336,166	+		GFF3282	0.16	+0.6
3,336,172	-		GFF3282	0.17	-1.5
3,336,179	-		GFF3282	0.17	+1.0
3,336,193	-		GFF3282	0.18	+0.1
3,336,232	+		GFF3282	0.20	+0.1
3,336,232	+		GFF3282	0.20	+0.6
3,336,232	+		GFF3282	0.20	+0.6
3,336,232	+		GFF3282	0.20	+0.7
3,336,232	+		GFF3282	0.20	+0.3
3,336,240	-		GFF3282	0.20	+0.1
3,336,240	-		GFF3282	0.20	+0.2
3,336,240	-		GFF3282	0.20	-0.7
3,336,240	-		GFF3282	0.20	+1.5
3,336,275	+		GFF3282	0.22	-0.9
3,336,275	+		GFF3282	0.22	-0.5
3,336,298	-		GFF3282	0.24	-0.4
3,336,304	+		GFF3282	0.24	-1.0
3,336,328	-		GFF3282	0.25	-0.2
3,336,331	+		GFF3282	0.26	-0.5
3,336,331	+		GFF3282	0.26	-0.6
3,336,331	+		GFF3282	0.26	-0.8
3,336,331	+		GFF3282	0.26	+0.4
3,336,331	+		GFF3282	0.26	+0.9
3,336,367	+		GFF3282	0.28	+0.4
3,336,391	+		GFF3282	0.29	-0.8
3,336,391	+		GFF3282	0.29	-0.8
3,336,391	+		GFF3282	0.29	-1.5
3,336,396	+		GFF3282	0.29	-1.7
3,336,396	+		GFF3282	0.29	-0.1
3,336,398	+		GFF3282	0.29	-0.9
3,336,399	-		GFF3282	0.29	+0.8
3,336,399	-		GFF3282	0.29	-1.2
3,336,401	+		GFF3282	0.29	+2.0
3,336,409	-		GFF3282	0.30	-0.4
3,336,410	+		GFF3282	0.30	+0.2
3,336,450	-		GFF3282	0.32	+1.0
3,336,471	+		GFF3282	0.33	+0.3
3,336,476	+		GFF3282	0.34	-0.1
3,336,476	+		GFF3282	0.34	-0.8
3,336,476	+		GFF3282	0.34	-1.7
3,336,476	+		GFF3282	0.34	-0.6
3,336,476	+		GFF3282	0.34	-0.9
3,336,476	+		GFF3282	0.34	-0.5
3,336,476	+		GFF3282	0.34	-1.4
3,336,481	+		GFF3282	0.34	-0.4
3,336,481	+		GFF3282	0.34	+0.0
3,336,481	+		GFF3282	0.34	-0.8
3,336,481	+		GFF3282	0.34	+0.7
3,336,481	+		GFF3282	0.34	+0.5
3,336,481	+		GFF3282	0.34	-0.0
3,336,481	+		GFF3282	0.34	+1.2
3,336,484	-		GFF3282	0.34	-0.2
3,336,484	-		GFF3282	0.34	+0.4
3,336,484	-		GFF3282	0.34	+0.5
3,336,484	-		GFF3282	0.34	+1.2
3,336,484	-		GFF3282	0.34	-0.9
3,336,486	+		GFF3282	0.34	-1.7
3,336,486	+		GFF3282	0.34	+0.2
3,336,486	+		GFF3282	0.34	-0.1
3,336,489	-		GFF3282	0.34	+0.4
3,336,489	-		GFF3282	0.34	+0.1
3,336,489	-		GFF3282	0.34	-0.8
3,336,489	-		GFF3282	0.34	+0.4
3,336,489	-		GFF3282	0.34	-1.7
3,336,489	-		GFF3282	0.34	+0.2
3,336,489	-		GFF3282	0.34	-1.3
3,336,489	-		GFF3282	0.34	-0.4
3,336,494	-		GFF3282	0.35	-0.0
3,336,494	-		GFF3282	0.35	+0.6
3,336,494	-		GFF3282	0.35	-0.5
3,336,504	-		GFF3282	0.35	-0.6
3,336,517	+		GFF3282	0.36	-1.9
3,336,525	-		GFF3282	0.36	-1.4
3,336,525	-		GFF3282	0.36	-0.5
3,336,558	-		GFF3282	0.38	-0.1
3,336,574	+		GFF3282	0.39	+0.4
3,336,579	+		GFF3282	0.40	+1.5
3,336,579	-		GFF3282	0.40	+0.4
3,336,582	-		GFF3282	0.40	+0.4
3,336,582	-		GFF3282	0.40	+1.3
3,336,593	+		GFF3282	0.40	-0.3
3,336,593	+		GFF3282	0.40	-0.4
3,336,601	-		GFF3282	0.41	-0.8
3,336,620	+		GFF3282	0.42	-1.4
3,336,628	-		GFF3282	0.42	+0.3
3,336,639	+		GFF3282	0.43	-0.3
3,336,647	-		GFF3282	0.43	+0.0
3,336,681	-		GFF3282	0.45	+0.6
3,336,691	+		GFF3282	0.46	-0.8
3,336,707	+		GFF3282	0.47	-3.4
3,336,712	+		GFF3282	0.47	-0.4
3,336,726	+		GFF3282	0.48	-0.1
3,336,730	-		GFF3282	0.48	-0.4
3,336,731	+		GFF3282	0.48	-1.7
3,336,731	+		GFF3282	0.48	+0.3
3,336,798	+		GFF3282	0.52	-1.2
3,336,799	+		GFF3282	0.52	-0.4
3,336,806	-		GFF3282	0.52	-0.9
3,336,806	-		GFF3282	0.52	-1.0
3,336,806	-		GFF3282	0.52	+1.0
3,336,841	+		GFF3282	0.54	-1.1
3,336,868	-		GFF3282	0.56	-0.5
3,336,890	+		GFF3282	0.57	-0.4
3,336,890	+		GFF3282	0.57	+1.4
3,336,897	+		GFF3282	0.58	-0.1
3,336,897	+		GFF3282	0.58	+0.2
3,336,897	+		GFF3282	0.58	-0.5
3,336,898	-		GFF3282	0.58	-0.8
3,336,898	-		GFF3282	0.58	-1.3