Strain Fitness in Sphingobium sp. HT1-2 around GFF3275

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,326,564	+		GFF3273	0.45	+1.4
3,326,570	+		GFF3273	0.46	+0.2
3,326,580	+		GFF3273	0.48	-0.7
3,326,580	+		GFF3273	0.48	+1.6
3,326,580	+		GFF3273	0.48	+0.3
3,326,583	-		GFF3273	0.49	-2.2
3,326,585	+		GFF3273	0.49	-1.5
3,326,590	+		GFF3273	0.50	-0.3
3,326,592	+		GFF3273	0.51	-1.2
3,326,592	+		GFF3273	0.51	-1.1
3,326,595	+		GFF3273	0.51	+1.2
3,326,598	-		GFF3273	0.52	-0.9
3,326,600	-		GFF3273	0.52	-0.7
3,326,600	-		GFF3273	0.52	+0.7
3,326,600	-		GFF3273	0.52	+0.0
3,326,600	-		GFF3273	0.52	-1.0
3,326,603	-		GFF3273	0.53	-1.0
3,326,610	+		GFF3273	0.54	-0.4
3,326,638	+		GFF3273	0.60	-0.9
3,326,652	+		GFF3273	0.63	-1.5
3,326,653	+		GFF3273	0.63	-0.1
3,326,653	+		GFF3273	0.63	-0.4
3,326,653	+		GFF3273	0.63	-1.2
3,326,653	+		GFF3273	0.63	+1.6
3,326,653	+		GFF3273	0.63	-0.4
3,326,661	-		GFF3273	0.65	-2.3
3,326,661	-		GFF3273	0.65	+1.5
3,326,661	-		GFF3273	0.65	-1.2
3,326,661	-		GFF3273	0.65	-1.1
3,326,661	-		GFF3273	0.65	-0.5
3,326,661	-		GFF3273	0.65	-1.2
3,326,701	-		GFF3273	0.73	-1.4
3,326,732	-		GFF3273	0.79	-0.1
3,326,735	-		GFF3273	0.80	-0.0
3,326,751	-		GFF3273	0.83	+0.1
3,326,751	-		GFF3273	0.83	+0.1
3,326,758	+		GFF3273	0.85	+0.4
3,326,758	+		GFF3273	0.85	+1.2
3,326,766	-		GFF3273	0.86	-1.0
3,326,766	-		GFF3273	0.86	-1.8
3,326,780	+		GFF3273	0.89	-0.1
3,326,841	+				-1.9
3,326,841	+				-0.7
3,326,859	-				-1.6
3,326,869	+				+0.3
3,326,874	+				-0.0
3,326,874	+				-2.2
3,326,884	+				+1.0
3,326,916	+				+0.9
3,327,559	-				+0.1
3,327,583	+				-0.3
3,327,583	+				+0.2
3,327,583	+				-0.4
3,327,583	+				-0.7
3,327,583	+				-0.4
3,327,588	+				-0.2
3,327,591	-				-0.1
3,327,596	-				+0.8
3,327,611	-				+0.1
3,327,617	-				-0.8
3,327,617	-				+1.0
3,327,617	-				-2.2
3,327,617	-				+2.1
3,327,630	+				+0.6
3,327,638	-				+0.9
3,327,640	+				+0.3
3,327,648	-				-0.1
3,327,648	-				-0.6
3,327,657	-				+0.1
3,327,667	+				+0.7
3,327,673	-				+0.4
3,327,675	-				-0.3
3,327,675	-				-0.1
3,327,731	+				-0.3
3,327,731	+				-2.3
3,327,731	+				-1.7
3,327,739	-				+0.1
3,327,749	-		GFF3275	0.11	+0.6
3,327,790	-		GFF3275	0.13	-0.8
3,327,792	+		GFF3275	0.13	-1.6
3,327,792	+		GFF3275	0.13	-0.7
3,327,960	-		GFF3275	0.22	-0.8
3,327,960	-		GFF3275	0.22	-0.2
3,327,976	+		GFF3275	0.23	-0.1
3,327,976	+		GFF3275	0.23	-0.1
3,327,988	+		GFF3275	0.24	+0.0
3,328,003	-		GFF3275	0.25	+1.2
3,328,041	+		GFF3275	0.27	+0.1
3,328,074	-		GFF3275	0.29	-0.6
3,328,081	+		GFF3275	0.29	+0.4
3,328,081	+		GFF3275	0.29	-0.8
3,328,081	+		GFF3275	0.29	-0.1
3,328,081	+		GFF3275	0.29	+1.2
3,328,081	+		GFF3275	0.29	+0.3
3,328,081	+		GFF3275	0.29	+0.8
3,328,081	+		GFF3275	0.29	-1.7
3,328,081	+		GFF3275	0.29	+1.0
3,328,081	+		GFF3275	0.29	+0.4
3,328,081	+		GFF3275	0.29	+1.3
3,328,081	+		GFF3275	0.29	-0.0
3,328,089	-		GFF3275	0.30	-0.7
3,328,089	-		GFF3275	0.30	+0.3
3,328,089	-		GFF3275	0.30	+1.3
3,328,089	-		GFF3275	0.30	-0.9
3,328,089	-		GFF3275	0.30	-0.3
3,328,089	-		GFF3275	0.30	-1.0
3,328,089	-		GFF3275	0.30	+0.1
3,328,089	-		GFF3275	0.30	+0.6
3,328,089	-		GFF3275	0.30	-1.1
3,328,089	-		GFF3275	0.30	+0.5
3,328,090	+		GFF3275	0.30	-1.5
3,328,091	+		GFF3275	0.30	+0.2
3,328,092	+		GFF3275	0.30	-0.7
3,328,100	+		GFF3275	0.30	-0.7
3,328,116	+		GFF3275	0.31	+0.6
3,328,126	+		GFF3275	0.32	-0.0
3,328,134	+		GFF3275	0.32	+1.0
3,328,142	+		GFF3275	0.33	-0.1
3,328,173	+		GFF3275	0.35	-0.7
3,328,173	+		GFF3275	0.35	+1.1
3,328,173	+		GFF3275	0.35	-1.6
3,328,173	+		GFF3275	0.35	+0.1
3,328,173	+		GFF3275	0.35	-1.3
3,328,181	-		GFF3275	0.35	-0.4
3,328,181	-		GFF3275	0.35	+0.7
3,328,181	-		GFF3275	0.35	+0.1
3,328,181	-		GFF3275	0.35	+0.2
3,328,181	-		GFF3275	0.35	-0.3
3,328,181	-		GFF3275	0.35	+0.4
3,328,191	-		GFF3275	0.36	-0.1
3,328,197	-		GFF3275	0.36	+0.0
3,328,280	+		GFF3275	0.41	+0.5
3,328,290	-		GFF3275	0.41	-0.6
3,328,295	+		GFF3275	0.41	+0.9
3,328,295	+		GFF3275	0.41	+0.8
3,328,295	+		GFF3275	0.41	-0.6
3,328,295	+		GFF3275	0.41	+0.3
3,328,295	+		GFF3275	0.41	+0.1
3,328,295	+		GFF3275	0.41	+1.0
3,328,303	-		GFF3275	0.42	-0.8
3,328,303	-		GFF3275	0.42	-0.4
3,328,303	-		GFF3275	0.42	+0.6
3,328,303	-		GFF3275	0.42	-0.4
3,328,303	-		GFF3275	0.42	-1.4
3,328,303	-		GFF3275	0.42	-0.8
3,328,303	-		GFF3275	0.42	+0.2
3,328,303	-		GFF3275	0.42	-0.5
3,328,303	-		GFF3275	0.42	-0.7
3,328,303	-		GFF3275	0.42	-0.6
3,328,303	-		GFF3275	0.42	+1.1
3,328,366	+		GFF3275	0.45	-0.6
3,328,366	+		GFF3275	0.45	-0.1
3,328,366	+		GFF3275	0.45	+0.4
3,328,366	+		GFF3275	0.45	+1.1
3,328,366	+		GFF3275	0.45	+1.3
3,328,374	+		GFF3275	0.46	-1.5
3,328,374	-		GFF3275	0.46	-1.4
3,328,374	-		GFF3275	0.46	+0.3
3,328,374	-		GFF3275	0.46	-0.6
3,328,382	+		GFF3275	0.46	+0.2
3,328,382	-		GFF3275	0.46	-0.6
3,328,392	-		GFF3275	0.47	+0.6
3,328,403	+		GFF3275	0.48	+1.7
3,328,411	-		GFF3275	0.48	-0.7
3,328,427	+		GFF3275	0.49	+0.2
3,328,448	+		GFF3275	0.50	+0.6
3,328,448	+		GFF3275	0.50	-0.1
3,328,456	-		GFF3275	0.51	+0.3
3,328,456	-		GFF3275	0.51	+0.7
3,328,463	+		GFF3275	0.51	-1.8
3,328,463	+		GFF3275	0.51	+0.0
3,328,463	+		GFF3275	0.51	-1.6
3,328,463	+		GFF3275	0.51	-0.6
3,328,463	+		GFF3275	0.51	+0.1
3,328,471	-		GFF3275	0.51	-0.2
3,328,471	-		GFF3275	0.51	-0.8
3,328,471	-		GFF3275	0.51	+1.6
3,328,471	-		GFF3275	0.51	-0.9
3,328,471	-		GFF3275	0.51	-0.2
3,328,473	+		GFF3275	0.51	-0.0
3,328,477	-		GFF3275	0.52	+0.1
3,328,478	+		GFF3275	0.52	-1.5
3,328,479	+		GFF3275	0.52	+0.6
3,328,479	+		GFF3275	0.52	-0.3
3,328,481	-		GFF3275	0.52	+0.1
3,328,481	-		GFF3275	0.52	-0.5
3,328,483	+		GFF3275	0.52	-0.6
3,328,502	-		GFF3275	0.53	+0.7
3,328,514	-		GFF3275	0.54	-1.5
3,328,518	+		GFF3275	0.54	-1.4
3,328,536	-		GFF3275	0.55	-0.2
3,328,541	-		GFF3275	0.55	-0.0
3,328,543	+		GFF3275	0.55	-0.1
3,328,555	+		GFF3275	0.56	+0.4
3,328,556	+		GFF3275	0.56	-0.2
3,328,563	-		GFF3275	0.57	+0.4
3,328,564	-		GFF3275	0.57	+0.2
3,328,569	-		GFF3275	0.57	-0.6
3,328,569	-		GFF3275	0.57	-0.2
3,328,571	+		GFF3275	0.57	-0.7
3,328,571	+		GFF3275	0.57	+0.2
3,328,571	+		GFF3275	0.57	+0.4
3,328,574	-		GFF3275	0.57	-1.9
3,328,621	-		GFF3275	0.60	+0.2
3,328,627	+		GFF3275	0.60	-0.6
3,328,627	+		GFF3275	0.60	+0.4
3,328,628	+		GFF3275	0.60	-0.7
3,328,630	+		GFF3275	0.60	-0.8
3,328,632	+		GFF3275	0.60	+0.8
3,328,640	+		GFF3275	0.61	+0.1
3,328,640	-		GFF3275	0.61	-0.5
3,328,645	+		GFF3275	0.61	-1.4
3,328,648	-		GFF3275	0.61	+0.4
3,328,653	-		GFF3275	0.62	+0.4
3,328,706	-		GFF3275	0.65	+1.2
3,328,709	+		GFF3275	0.65	-0.6
3,328,717	-		GFF3275	0.65	-1.1
3,328,741	+		GFF3275	0.67	+0.3
3,328,762	+		GFF3275	0.68	+0.2
3,328,773	+		GFF3275	0.68	-0.7
3,328,773	+		GFF3275	0.68	-0.6
3,328,773	+		GFF3275	0.68	+2.0
3,328,773	+		GFF3275	0.68	+1.2
3,328,773	+		GFF3275	0.68	-1.0
3,328,773	+		GFF3275	0.68	+1.3
3,328,773	+		GFF3275	0.68	+0.4
3,328,781	-		GFF3275	0.69	-0.9
3,328,781	-		GFF3275	0.69	+0.4
3,328,781	-		GFF3275	0.69	+0.2
3,328,781	-		GFF3275	0.69	-1.2
3,328,792	+		GFF3275	0.70	+0.5
3,328,799	+		GFF3275	0.70	+0.4
3,328,800	-		GFF3275	0.70	-0.6
3,328,804	+		GFF3275	0.70	+1.6
3,328,804	+		GFF3275	0.70	+0.4
3,328,822	+		GFF3275	0.71	-1.1
3,328,824	+		GFF3275	0.71	-1.8
3,328,827	+		GFF3275	0.72	-1.8
3,328,830	-		GFF3275	0.72	-0.3
3,328,832	-		GFF3275	0.72	+0.0
3,328,835	-		GFF3275	0.72	-1.6
3,328,879	+		GFF3275	0.74	+1.4
3,328,879	+		GFF3275	0.74	+0.2
3,328,879	+		GFF3275	0.74	-0.8
3,328,887	-		GFF3275	0.75	-0.0
3,328,887	-		GFF3275	0.75	-0.6
3,328,887	-		GFF3275	0.75	+1.1
3,328,887	-		GFF3275	0.75	-0.2
3,328,887	-		GFF3275	0.75	-1.7
3,328,914	-		GFF3275	0.76	+0.1
3,328,919	-		GFF3275	0.77	+0.7
3,328,924	-		GFF3275	0.77	-0.2
3,328,929	-		GFF3275	0.77	+0.7
3,328,935	+		GFF3275	0.78	+1.2
3,328,935	+		GFF3275	0.78	+1.1
3,328,935	+		GFF3275	0.78	+1.4
3,328,940	+		GFF3275	0.78	+0.9
3,328,943	-		GFF3275	0.78	-0.3
3,328,945	+		GFF3275	0.78	+0.6
3,328,948	-		GFF3275	0.78	+0.1
3,328,953	-		GFF3275	0.79	+0.7
3,328,972	+		GFF3275	0.80	-0.3
3,328,987	-		GFF3275	0.81	-2.0
3,329,007	-		GFF3275	0.82	-0.4
3,329,032	+		GFF3275	0.83	-0.5
3,329,033	+		GFF3275	0.83	+1.4
3,329,041	-		GFF3275	0.84	-0.3
3,329,044	-		GFF3275	0.84	-0.4
3,329,044	-		GFF3275	0.84	+0.7
3,329,051	-		GFF3275	0.84	-0.2
3,329,051	-		GFF3275	0.84	-0.3
3,329,081	+		GFF3275	0.86	+0.6
3,329,081	+		GFF3275	0.86	-0.9
3,329,101	+		GFF3275	0.87	-1.4
3,329,109	+		GFF3275	0.87	+0.3
3,329,109	+		GFF3275	0.87	+1.5
3,329,109	+		GFF3275	0.87	+1.1
3,329,109	+		GFF3275	0.87	-0.6
3,329,111	+		GFF3275	0.88	-0.3
3,329,117	-		GFF3275	0.88	-0.2
3,329,117	-		GFF3275	0.88	-0.8
3,329,117	-		GFF3275	0.88	+0.3
3,329,117	-		GFF3275	0.88	+0.2
3,329,117	-		GFF3275	0.88	-1.5
3,329,117	-		GFF3275	0.88	+0.4
3,329,122	-		GFF3275	0.88	-0.4
3,329,123	-		GFF3275	0.88	-0.6
3,329,136	+		GFF3275	0.89	+0.4
3,329,179	+				-0.2
3,329,179	+				+1.0
3,329,187	-				+0.6
3,329,187	-				-0.2
3,329,200	+				+1.2
3,329,215	-				+1.2
3,329,215	-				-1.0
3,329,215	-				+1.4
3,329,248	+				+0.9
3,329,248	+				-2.1
3,329,255	+				+0.1
3,329,258	-				-0.0
3,329,319	-				+0.8
3,329,328	-				-0.5
3,329,328	-				+0.1
3,329,341	-				-1.4
3,329,346	-				+0.4
3,329,346	-				+0.2
3,329,351	-				-0.7
3,329,359	+				-0.1
3,329,367	-				-0.3
3,329,407	+				-1.9
3,329,415	-				+0.3
3,329,415	-				+1.0
3,329,428	+				+0.3
3,329,434	+				-2.6
3,329,462	+				-1.0
3,329,474	+				+0.7
3,329,482	-				-0.4
3,329,482	-				-0.6
3,329,508	-				-0.5
3,329,521	+				+0.1
3,329,521	+				-2.0
3,329,529	-				-1.0
3,329,529	-				-0.9
3,329,529	-				-0.0
3,329,529	-				-0.2
3,329,539	+				+0.7
3,329,539	+				+0.6
3,329,542	-				+0.4
3,329,547	-				-0.6
3,329,548	-				-2.4
3,329,598	+				+1.1
3,329,598	+				+0.4
3,329,599	+				+0.2
3,329,604	+				+1.1
3,329,604	+				-0.5
3,329,606	-				-0.2
3,329,614	+				-0.1
3,329,614	+				-0.7
3,329,641	+				+0.5
3,329,643	-				+0.5
3,329,647	+				+0.1
3,329,647	+				+0.1
3,329,649	-				-0.3
3,329,655	-				-1.0
3,329,658	+				-1.0
3,329,658	+				-0.2
3,329,666	-				+0.2
3,329,666	-				+0.2
3,329,666	-				+0.2
3,329,666	-				+0.8
3,329,666	-				-0.9
3,329,675	-				-0.9
3,329,708	+		GFF3276	0.10	-0.7
3,329,715	+		GFF3276	0.10	+0.1
3,329,719	-		GFF3276	0.11	+0.7
3,329,723	-		GFF3276	0.11	-0.2
3,329,724	-		GFF3276	0.11	-0.7
3,329,742	+		GFF3276	0.12	-0.4
3,329,742	+		GFF3276	0.12	-2.7
3,329,742	+		GFF3276	0.12	-0.6
3,329,742	+		GFF3276	0.12	+0.4
3,329,742	+		GFF3276	0.12	-0.9
3,329,742	+		GFF3276	0.12	+1.0
3,329,742	+		GFF3276	0.12	+0.2
3,329,742	+		GFF3276	0.12	-2.9
3,329,742	+		GFF3276	0.12	-0.5
3,329,749	-		GFF3276	0.12	-0.6
3,329,749	-		GFF3276	0.12	-1.0
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3,329,826	-		GFF3276	0.16	-1.9
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