Strain Fitness in Sphingobium sp. HT1-2 around GFF3211

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,267,240	+		GFF3210	0.63	-0.3
3,267,242	+		GFF3210	0.63	+0.4
3,267,246	-		GFF3210	0.63	+0.4
3,267,276	+		GFF3210	0.65	-0.3
3,267,279	+		GFF3210	0.65	+0.1
3,267,301	-		GFF3210	0.66	+0.8
3,267,301	-		GFF3210	0.66	+0.3
3,267,341	-		GFF3210	0.68	+0.4
3,267,341	-		GFF3210	0.68	+0.4
3,267,341	-		GFF3210	0.68	-0.4
3,267,350	+		GFF3210	0.68	-0.4
3,267,368	-		GFF3210	0.69	-0.4
3,267,368	-		GFF3210	0.69	+1.0
3,267,368	-		GFF3210	0.69	-0.8
3,267,378	+		GFF3210	0.70	-0.7
3,267,378	+		GFF3210	0.70	-1.9
3,267,405	+		GFF3210	0.71	-1.1
3,267,406	+		GFF3210	0.71	-0.6
3,267,450	-		GFF3210	0.73	-0.6
3,267,496	+		GFF3210	0.75	-1.3
3,267,503	+		GFF3210	0.76	-0.2
3,267,503	+		GFF3210	0.76	+0.4
3,267,503	+		GFF3210	0.76	+0.4
3,267,503	+		GFF3210	0.76	-0.8
3,267,511	-		GFF3210	0.76	-2.0
3,267,511	-		GFF3210	0.76	+0.5
3,267,518	-		GFF3210	0.77	-1.2
3,267,544	+		GFF3210	0.78	+0.6
3,267,560	+		GFF3210	0.79	-0.2
3,267,570	+		GFF3210	0.79	-0.1
3,267,570	+		GFF3210	0.79	-0.2
3,267,570	+		GFF3210	0.79	-0.1
3,267,570	+		GFF3210	0.79	-0.1
3,267,570	+		GFF3210	0.79	+0.1
3,267,570	+		GFF3210	0.79	+0.5
3,267,570	+		GFF3210	0.79	-1.2
3,267,578	-		GFF3210	0.79	+0.3
3,267,578	-		GFF3210	0.79	+1.5
3,267,578	-		GFF3210	0.79	-1.2
3,267,578	-		GFF3210	0.79	-0.5
3,267,578	-		GFF3210	0.79	-1.0
3,267,578	-		GFF3210	0.79	+1.0
3,267,580	+		GFF3210	0.80	-0.1
3,267,580	+		GFF3210	0.80	-0.9
3,267,588	-		GFF3210	0.80	-0.6
3,267,588	-		GFF3210	0.80	+1.0
3,267,588	-		GFF3210	0.80	+0.9
3,267,588	-		GFF3210	0.80	+1.3
3,267,588	-		GFF3210	0.80	+0.9
3,267,611	+		GFF3210	0.81	-0.8
3,267,618	+		GFF3210	0.81	+0.2
3,267,628	+		GFF3210	0.82	+0.5
3,267,636	-		GFF3210	0.82	+0.1
3,267,636	-		GFF3210	0.82	+1.3
3,267,640	+		GFF3210	0.83	+1.0
3,267,648	+		GFF3210	0.83	+0.1
3,267,658	-		GFF3210	0.83	-0.3
3,267,661	+		GFF3210	0.84	+0.7
3,267,663	+		GFF3210	0.84	-0.0
3,267,669	-		GFF3210	0.84	-1.1
3,267,669	-		GFF3210	0.84	+1.1
3,267,669	-		GFF3210	0.84	+0.5
3,267,710	+		GFF3210	0.86	+1.3
3,267,724	+		GFF3210	0.87	+0.0
3,267,728	+		GFF3210	0.87	+1.5
3,267,742	-		GFF3210	0.88	+0.9
3,267,747	+		GFF3210	0.88	-0.4
3,267,750	+		GFF3210	0.88	-0.1
3,267,752	+		GFF3210	0.88	-0.9
3,267,758	-		GFF3210	0.88	+0.9
3,267,768	+		GFF3210	0.89	+0.9
3,267,799	+				+0.9
3,267,804	+				+0.5
3,267,804	+				+0.6
3,267,809	+				-0.3
3,267,809	+				-0.4
3,267,809	+				-0.4
3,267,817	+				+0.1
3,267,817	-				+0.0
3,267,817	-				-0.5
3,267,817	-				-0.5
3,267,817	-				-0.0
3,267,817	-				-0.1
3,267,825	-				+0.2
3,267,847	-				+1.4
3,267,847	-				-0.0
3,267,847	-				+0.1
3,267,923	+				+0.7
3,267,926	-				+0.5
3,267,933	+				+0.5
3,267,933	+				+0.4
3,267,933	+				-0.5
3,267,933	+				+0.9
3,267,933	+				-0.4
3,267,941	-				+0.9
3,267,941	-				+0.1
3,267,941	-				+0.8
3,267,941	-				-2.0
3,267,957	+				-0.9
3,267,957	+				+1.8
3,267,981	+				+0.6
3,267,989	-				-0.4
3,267,989	-				+1.0
3,268,008	-				+0.6
3,268,019	-				+0.3
3,268,100	-				+0.1
3,268,125	+				-0.6
3,268,126	+				+0.5
3,268,126	+				-1.2
3,268,126	+				+1.3
3,268,126	+				+0.5
3,268,126	+				+0.1
3,268,129	-				+0.2
3,268,134	-				-0.5
3,268,134	-				-1.8
3,268,157	+				-0.0
3,268,157	+				-0.4
3,268,157	+				-0.6
3,268,157	+				+0.4
3,268,162	+				+1.5
3,268,165	-				-0.5
3,268,169	+				+0.2
3,268,169	+				-0.5
3,268,170	-				-2.8
3,268,177	-				-0.7
3,268,177	-				+0.4
3,268,198	+				-0.3
3,268,198	+				+0.1
3,268,201	+				-0.5
3,268,201	+				+0.0
3,268,206	-				+0.6
3,268,208	+				-0.6
3,268,208	+				-0.5
3,268,208	+				-0.4
3,268,209	+				-1.1
3,268,209	+				-0.4
3,268,209	+				+0.1
3,268,216	-				-2.5
3,268,216	-				+0.7
3,268,216	-				-1.5
3,268,216	-				-1.7
3,268,217	-				+0.8
3,268,228	+				-1.3
3,268,228	+				-1.2
3,268,228	+				+0.3
3,268,236	+				-0.5
3,268,237	-				-0.4
3,268,237	-				-0.3
3,268,272	-		GFF3211	0.17	-2.3
3,268,274	+		GFF3211	0.18	+0.5
3,268,288	-		GFF3211	0.21	-1.4
3,268,305	+		GFF3211	0.25	-0.1
3,268,305	+		GFF3211	0.25	-1.3
3,268,336	-		GFF3211	0.33	+1.1
3,268,347	+		GFF3211	0.35	+0.5
3,268,348	+		GFF3211	0.36	-0.2
3,268,381	+		GFF3211	0.44	+0.3
3,268,458	-		GFF3211	0.62	+0.0
3,268,474	+		GFF3211	0.66	-1.8
3,268,492	+		GFF3211	0.71	+0.2
3,268,525	+		GFF3211	0.79	+0.1
3,268,525	+		GFF3211	0.79	-0.1
3,268,540	+		GFF3211	0.82	-0.5
3,268,545	+		GFF3211	0.83	-1.2
3,268,553	-		GFF3211	0.85	+0.3
3,268,553	-		GFF3211	0.85	+0.1
3,268,557	-		GFF3211	0.86	+0.6
3,268,557	-		GFF3211	0.86	-1.0
3,268,559	+		GFF3211	0.87	+0.7
3,268,637	-				+0.8
3,268,643	-				+0.5
3,268,663	+				-0.3
3,268,706	-				+0.0
3,268,706	-				-0.6
3,268,712	+				-0.7
3,268,720	-				+0.5
3,268,722	+				-0.4
3,268,729	+				+0.8
3,268,729	-				+0.7
3,268,730	-				-0.5
3,268,730	-				-1.1
3,268,739	+				-0.7
3,268,747	-				+1.5
3,268,752	-				-0.3
3,268,752	-				-0.0
3,268,762	-				+1.0
3,268,775	-				-0.3
3,268,776	+				+0.1
3,268,780	-				+0.1
3,268,796	+				+0.1
3,268,821	-				-0.5
3,268,828	+				-1.2
3,268,831	-				+0.1
3,268,841	+				-0.8
3,268,854	-				+0.8
3,268,854	-				-0.5
3,268,860	+				-3.0
3,268,871	+				+0.5
3,268,905	+				+0.8
3,268,910	+		GFF3212	0.10	-1.9
3,268,912	+		GFF3212	0.10	+0.3
3,268,913	-		GFF3212	0.10	-0.2
3,268,918	-		GFF3212	0.10	+0.7
3,268,918	-		GFF3212	0.10	-1.9
3,268,934	+		GFF3212	0.11	-0.6
3,268,934	+		GFF3212	0.11	+0.8
3,268,934	+		GFF3212	0.11	-0.5
3,268,942	-		GFF3212	0.12	-2.0
3,268,942	-		GFF3212	0.12	+1.3
3,268,944	+		GFF3212	0.12	-1.0
3,268,946	-		GFF3212	0.12	-2.0
3,268,952	-		GFF3212	0.12	-2.3
3,268,959	-		GFF3212	0.13	-0.2
3,268,961	+		GFF3212	0.13	+0.4
3,268,969	-		GFF3212	0.13	+0.8
3,268,980	+		GFF3212	0.14	+0.3
3,269,009	+		GFF3212	0.15	+0.3
3,269,011	-		GFF3212	0.16	-1.0
3,269,014	-		GFF3212	0.16	+0.6
3,269,019	-		GFF3212	0.16	-0.3
3,269,022	-		GFF3212	0.16	-2.0
3,269,054	+		GFF3212	0.18	-1.3
3,269,056	-		GFF3212	0.18	-0.7
3,269,058	+		GFF3212	0.18	-0.5
3,269,071	+		GFF3212	0.19	+0.2
3,269,071	+		GFF3212	0.19	-0.8
3,269,076	+		GFF3212	0.19	+0.3
3,269,076	+		GFF3212	0.19	+1.2
3,269,076	+		GFF3212	0.19	+1.5
3,269,084	-		GFF3212	0.20	-0.1
3,269,084	-		GFF3212	0.20	-0.5
3,269,089	-		GFF3212	0.20	+0.5
3,269,108	+		GFF3212	0.21	-1.3
3,269,113	+		GFF3212	0.21	+0.4
3,269,116	-		GFF3212	0.21	-0.5
3,269,116	-		GFF3212	0.21	-0.6
3,269,118	-		GFF3212	0.21	-1.9
3,269,121	-		GFF3212	0.22	-0.7
3,269,122	+		GFF3212	0.22	+1.3
3,269,123	+		GFF3212	0.22	+0.1
3,269,129	+		GFF3212	0.22	-0.3
3,269,129	+		GFF3212	0.22	+0.2
3,269,131	-		GFF3212	0.22	-0.1
3,269,131	-		GFF3212	0.22	+0.6
3,269,131	-		GFF3212	0.22	+1.2
3,269,143	+		GFF3212	0.23	+0.5
3,269,149	+		GFF3212	0.23	-1.5
3,269,153	+		GFF3212	0.23	-0.0
3,269,161	-		GFF3212	0.24	-0.5
3,269,162	-		GFF3212	0.24	-1.3
3,269,162	-		GFF3212	0.24	-0.5
3,269,184	+		GFF3212	0.25	-1.3
3,269,217	-		GFF3212	0.27	+0.2
3,269,217	-		GFF3212	0.27	-0.5
3,269,222	-		GFF3212	0.27	-0.9
3,269,222	-		GFF3212	0.27	-1.2
3,269,224	+		GFF3212	0.27	+0.5
3,269,231	+		GFF3212	0.28	-1.2
3,269,243	+		GFF3212	0.28	+0.2
3,269,248	-		GFF3212	0.28	+0.2
3,269,258	+		GFF3212	0.29	-1.7
3,269,263	+		GFF3212	0.29	+0.1
3,269,263	+		GFF3212	0.29	-1.7
3,269,266	-		GFF3212	0.29	+0.5
3,269,268	+		GFF3212	0.30	-0.4
3,269,271	-		GFF3212	0.30	-0.0
3,269,271	-		GFF3212	0.30	-0.1
3,269,276	-		GFF3212	0.30	-0.0
3,269,280	+		GFF3212	0.30	-0.9
3,269,285	+		GFF3212	0.30	+0.9
3,269,292	-		GFF3212	0.31	+0.6
3,269,293	-		GFF3212	0.31	+0.1
3,269,318	+		GFF3212	0.32	+0.9
3,269,326	-		GFF3212	0.33	-0.3
3,269,328	+		GFF3212	0.33	-0.2
3,269,336	+		GFF3212	0.33	-1.7
3,269,344	-		GFF3212	0.34	-0.9
3,269,380	+		GFF3212	0.36	+0.2
3,269,398	+		GFF3212	0.37	+1.6
3,269,409	+		GFF3212	0.37	+0.2
3,269,429	+		GFF3212	0.38	+0.3
3,269,438	+		GFF3212	0.39	-0.5
3,269,439	+		GFF3212	0.39	-1.1
3,269,439	+		GFF3212	0.39	-0.9
3,269,447	-		GFF3212	0.39	-0.5
3,269,462	-		GFF3212	0.40	-0.5
3,269,482	+		GFF3212	0.41	+0.1
3,269,482	+		GFF3212	0.41	-0.5
3,269,489	+		GFF3212	0.42	-2.5
3,269,492	-		GFF3212	0.42	-0.1
3,269,511	+		GFF3212	0.43	-0.5
3,269,519	-		GFF3212	0.43	+0.0
3,269,519	-		GFF3212	0.43	+0.1
3,269,528	+		GFF3212	0.44	-1.7
3,269,557	+		GFF3212	0.45	-0.7
3,269,567	+		GFF3212	0.46	-0.6
3,269,585	-		GFF3212	0.47	+0.6
3,269,585	-		GFF3212	0.47	-0.6
3,269,586	+		GFF3212	0.47	-1.3
3,269,594	-		GFF3212	0.47	-0.1
3,269,603	+		GFF3212	0.48	-0.1
3,269,603	+		GFF3212	0.48	+0.3
3,269,603	+		GFF3212	0.48	-0.7
3,269,611	+		GFF3212	0.48	-0.3
3,269,611	+		GFF3212	0.48	-0.4
3,269,611	-		GFF3212	0.48	-0.9
3,269,611	-		GFF3212	0.48	-1.3
3,269,611	-		GFF3212	0.48	-2.8
3,269,611	-		GFF3212	0.48	-0.1
3,269,611	-		GFF3212	0.48	+1.3
3,269,611	-		GFF3212	0.48	-0.5
3,269,611	-		GFF3212	0.48	-2.7
3,269,611	-		GFF3212	0.48	+0.1
3,269,611	-		GFF3212	0.48	-0.4
3,269,611	-		GFF3212	0.48	-1.0
3,269,611	-		GFF3212	0.48	-1.3
3,269,611	-		GFF3212	0.48	+0.8