Strain Fitness in Sphingobium sp. HT1-2 around GFF3049

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3047 and GFF3048 overlap by 4 nucleotidesGFF3048 and GFF3049 are separated by 64 nucleotidesGFF3049 and GFF3050 are separated by 123 nucleotides GFF3047 - Two-component oxygen-sensor histidine kinase FixL, at 3,123,603 to 3,124,748 GFF3047 GFF3048 - Two-component nitrogen fixation transcriptional regulator FixJ, at 3,124,745 to 3,125,362 GFF3048 GFF3049 - Transcriptional regulator, Crp/Fnr family, at 3,125,427 to 3,126,185 GFF3049 GFF3050 - Prolipoprotein diacylglyceryl transferase, at 3,126,309 to 3,127,175 GFF3050 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -2 -1 0 1 2at 3124.443 kb on - strand, within GFF3047at 3124.489 kb on + strand, within GFF3047at 3124.506 kb on + strand, within GFF3047at 3124.526 kb on + strand, within GFF3047at 3124.541 kb on + strand, within GFF3047at 3124.543 kb on - strand, within GFF3047at 3124.553 kb on + strand, within GFF3047at 3124.558 kb on + strand, within GFF3047at 3124.586 kb on + strand, within GFF3047at 3124.594 kb on - strand, within GFF3047at 3124.618 kb on + strand, within GFF3047at 3124.623 kb on + strand, within GFF3047at 3124.629 kb on + strand, within GFF3047at 3124.631 kb on - strand, within GFF3047at 3124.668 kb on + strandat 3124.673 kb on + strandat 3124.673 kb on + strandat 3124.673 kb on + strandat 3124.673 kb on + strandat 3124.676 kb on - strandat 3124.681 kb on - strandat 3124.681 kb on - strandat 3124.681 kb on - strandat 3124.681 kb on - strandat 3124.681 kb on - strandat 3124.686 kb on + strandat 3124.687 kb on - strandat 3124.695 kb on - strandat 3124.707 kb on + strandat 3124.742 kb on + strandat 3124.743 kb on + strandat 3124.747 kb on - strandat 3124.751 kb on - strandat 3124.807 kb on - strand, within GFF3048at 3124.812 kb on + strand, within GFF3048at 3124.816 kb on - strand, within GFF3048at 3124.820 kb on + strand, within GFF3048at 3124.828 kb on - strand, within GFF3048at 3124.849 kb on - strand, within GFF3048at 3124.849 kb on - strand, within GFF3048at 3124.879 kb on + strand, within GFF3048at 3124.969 kb on + strand, within GFF3048at 3124.998 kb on - strand, within GFF3048at 3125.081 kb on + strand, within GFF3048at 3125.089 kb on - strand, within GFF3048at 3125.116 kb on + strand, within GFF3048at 3125.116 kb on + strand, within GFF3048at 3125.116 kb on + strand, within GFF3048at 3125.121 kb on + strand, within GFF3048at 3125.132 kb on + strand, within GFF3048at 3125.134 kb on - strand, within GFF3048at 3125.146 kb on + strand, within GFF3048at 3125.146 kb on + strand, within GFF3048at 3125.206 kb on - strand, within GFF3048at 3125.206 kb on - strand, within GFF3048at 3125.208 kb on - strand, within GFF3048at 3125.212 kb on + strand, within GFF3048at 3125.241 kb on + strand, within GFF3048at 3125.241 kb on + strand, within GFF3048at 3125.241 kb on + strand, within GFF3048at 3125.241 kb on + strand, within GFF3048at 3125.241 kb on + strand, within GFF3048at 3125.241 kb on + strand, within GFF3048at 3125.249 kb on - strand, within GFF3048at 3125.249 kb on - strand, within GFF3048at 3125.249 kb on - strand, within GFF3048at 3125.249 kb on - strand, within GFF3048at 3125.253 kb on + strand, within GFF3048at 3125.253 kb on + strand, within GFF3048at 3125.261 kb on - strand, within GFF3048at 3125.261 kb on - strand, within GFF3048at 3125.276 kb on - strand, within GFF3048at 3125.309 kb on + strandat 3125.309 kb on + strandat 3125.316 kb on - strandat 3125.316 kb on - strandat 3125.317 kb on - strandat 3125.317 kb on - strandat 3125.320 kb on + strandat 3125.341 kb on + strandat 3125.349 kb on - strandat 3125.352 kb on + strandat 3125.352 kb on + strandat 3125.352 kb on + strandat 3125.352 kb on + strandat 3125.352 kb on + strandat 3125.365 kb on - strandat 3125.371 kb on + strandat 3125.376 kb on + strandat 3125.457 kb on - strandat 3125.459 kb on + strandat 3125.476 kb on + strandat 3125.491 kb on - strandat 3125.512 kb on + strand, within GFF3049at 3125.520 kb on + strand, within GFF3049at 3125.528 kb on - strand, within GFF3049at 3125.533 kb on - strand, within GFF3049at 3125.553 kb on + strand, within GFF3049at 3125.556 kb on + strand, within GFF3049at 3125.557 kb on - strand, within GFF3049at 3125.591 kb on + strand, within GFF3049at 3125.610 kb on - strand, within GFF3049at 3125.655 kb on - strand, within GFF3049at 3125.728 kb on - strand, within GFF3049at 3125.736 kb on - strand, within GFF3049at 3125.781 kb on + strand, within GFF3049at 3125.784 kb on - strand, within GFF3049at 3125.791 kb on - strand, within GFF3049at 3125.805 kb on + strand, within GFF3049at 3125.805 kb on + strand, within GFF3049at 3125.911 kb on - strand, within GFF3049at 3125.945 kb on + strand, within GFF3049at 3125.945 kb on + strand, within GFF3049at 3125.994 kb on - strand, within GFF3049at 3125.999 kb on - strand, within GFF3049at 3125.999 kb on - strand, within GFF3049at 3126.036 kb on - strand, within GFF3049at 3126.043 kb on + strand, within GFF3049at 3126.053 kb on - strand, within GFF3049at 3126.098 kb on - strand, within GFF3049at 3126.109 kb on + strand, within GFF3049at 3126.159 kb on + strandat 3126.159 kb on + strandat 3126.164 kb on + strandat 3126.167 kb on - strandat 3126.169 kb on + strandat 3126.179 kb on + strandat 3126.188 kb on - strandat 3126.188 kb on - strandat 3126.206 kb on - strandat 3126.252 kb on - strandat 3126.278 kb on + strandat 3127.124 kb on + strandat 3127.132 kb on - strandat 3127.132 kb on - strandat 3127.133 kb on + strandat 3127.138 kb on + strandat 3127.159 kb on + strandat 3127.159 kb on + strandat 3127.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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3,124,443 - GFF3047 0.73 -0.0
3,124,489 + GFF3047 0.77 +0.7
3,124,506 + GFF3047 0.79 -2.0
3,124,526 + GFF3047 0.81 +1.4
3,124,541 + GFF3047 0.82 +0.3
3,124,543 - GFF3047 0.82 -0.6
3,124,553 + GFF3047 0.83 +1.1
3,124,558 + GFF3047 0.83 -0.1
3,124,586 + GFF3047 0.86 +0.2
3,124,594 - GFF3047 0.86 -1.6
3,124,618 + GFF3047 0.89 -0.3
3,124,623 + GFF3047 0.89 -0.3
3,124,629 + GFF3047 0.90 -1.7
3,124,631 - GFF3047 0.90 +1.2
3,124,668 + +0.3
3,124,673 + -0.8
3,124,673 + +0.6
3,124,673 + +0.5
3,124,673 + -0.5
3,124,676 - -0.7
3,124,681 - +0.7
3,124,681 - +0.6
3,124,681 - +0.2
3,124,681 - +0.8
3,124,681 - +0.2
3,124,686 + -0.4
3,124,687 - +0.1
3,124,695 - +0.9
3,124,707 + -0.7
3,124,742 + -2.5
3,124,743 + -0.6
3,124,747 - +1.4
3,124,751 - +0.9
3,124,807 - GFF3048 0.10 -0.9
3,124,812 + GFF3048 0.11 +0.8
3,124,816 - GFF3048 0.11 -0.3
3,124,820 + GFF3048 0.12 +1.2
3,124,828 - GFF3048 0.13 +1.9
3,124,849 - GFF3048 0.17 +0.7
3,124,849 - GFF3048 0.17 +1.3
3,124,879 + GFF3048 0.22 +1.6
3,124,969 + GFF3048 0.36 +0.9
3,124,998 - GFF3048 0.41 -0.1
3,125,081 + GFF3048 0.54 -1.4
3,125,089 - GFF3048 0.56 +0.2
3,125,116 + GFF3048 0.60 +2.0
3,125,116 + GFF3048 0.60 -0.2
3,125,116 + GFF3048 0.60 -2.3
3,125,121 + GFF3048 0.61 +0.4
3,125,132 + GFF3048 0.63 -1.5
3,125,134 - GFF3048 0.63 +0.3
3,125,146 + GFF3048 0.65 +1.3
3,125,146 + GFF3048 0.65 +0.4
3,125,206 - GFF3048 0.75 -2.5
3,125,206 - GFF3048 0.75 -0.0
3,125,208 - GFF3048 0.75 -2.3
3,125,212 + GFF3048 0.76 +0.2
3,125,241 + GFF3048 0.80 +0.1
3,125,241 + GFF3048 0.80 +1.2
3,125,241 + GFF3048 0.80 +0.9
3,125,241 + GFF3048 0.80 -1.7
3,125,241 + GFF3048 0.80 +1.8
3,125,241 + GFF3048 0.80 +0.0
3,125,249 - GFF3048 0.82 -0.1
3,125,249 - GFF3048 0.82 +0.5
3,125,249 - GFF3048 0.82 +0.1
3,125,249 - GFF3048 0.82 +0.1
3,125,253 + GFF3048 0.82 -1.9
3,125,253 + GFF3048 0.82 -1.5
3,125,261 - GFF3048 0.83 +0.7
3,125,261 - GFF3048 0.83 +0.5
3,125,276 - GFF3048 0.86 +0.4
3,125,309 + -1.6
3,125,309 + +0.1
3,125,316 - +0.3
3,125,316 - -0.4
3,125,317 - -0.0
3,125,317 - -0.8
3,125,320 + -1.5
3,125,341 + -0.6
3,125,349 - +0.9
3,125,352 + +0.3
3,125,352 + -0.9
3,125,352 + -0.2
3,125,352 + -0.0
3,125,352 + -0.9
3,125,365 - -0.8
3,125,371 + +1.1
3,125,376 + +0.6
3,125,457 - -0.3
3,125,459 + -0.1
3,125,476 + +1.4
3,125,491 - +0.5
3,125,512 + GFF3049 0.11 +1.1
3,125,520 + GFF3049 0.12 +0.2
3,125,528 - GFF3049 0.13 +0.4
3,125,533 - GFF3049 0.14 +0.8
3,125,553 + GFF3049 0.17 -2.0
3,125,556 + GFF3049 0.17 +0.4
3,125,557 - GFF3049 0.17 +0.3
3,125,591 + GFF3049 0.22 +0.4
3,125,610 - GFF3049 0.24 -0.9
3,125,655 - GFF3049 0.30 -0.1
3,125,728 - GFF3049 0.40 +0.9
3,125,736 - GFF3049 0.41 -0.5
3,125,781 + GFF3049 0.47 +0.4
3,125,784 - GFF3049 0.47 +1.2
3,125,791 - GFF3049 0.48 +1.5
3,125,805 + GFF3049 0.50 -1.6
3,125,805 + GFF3049 0.50 -1.8
3,125,911 - GFF3049 0.64 +0.7
3,125,945 + GFF3049 0.68 +0.5
3,125,945 + GFF3049 0.68 -0.6
3,125,994 - GFF3049 0.75 -0.3
3,125,999 - GFF3049 0.75 +1.2
3,125,999 - GFF3049 0.75 -0.2
3,126,036 - GFF3049 0.80 -0.6
3,126,043 + GFF3049 0.81 -0.8
3,126,053 - GFF3049 0.82 +0.4
3,126,098 - GFF3049 0.88 +0.3
3,126,109 + GFF3049 0.90 +1.3
3,126,159 + +1.5
3,126,159 + -0.1
3,126,164 + -0.8
3,126,167 - -1.3
3,126,169 + +0.4
3,126,179 + -0.1
3,126,188 - -1.4
3,126,188 - -1.3
3,126,206 - +1.1
3,126,252 - -0.4
3,126,278 + +0.5
3,127,124 + +1.0
3,127,132 - -0.2
3,127,132 - -0.2
3,127,133 + -0.1
3,127,138 + +0.6
3,127,159 + -0.9
3,127,159 + +0.3
3,127,182 + -1.7

Or see this region's nucleotide sequence