Strain Fitness in Sphingobium sp. HT1-2 around GFF3027

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,100,040	+		GFF3025	0.89	+0.5
3,100,044	+		GFF3025	0.89	-2.2
3,100,087	-				+0.8
3,100,087	-				+0.3
3,100,087	-				+0.9
3,100,087	-				+0.7
3,100,087	-				-0.5
3,100,087	-				-0.6
3,100,087	-				+0.4
3,100,087	-				+0.5
3,100,087	-				-1.1
3,100,096	+				+0.2
3,100,104	-				+0.8
3,100,104	-				-0.5
3,100,104	-				-0.1
3,100,104	-				-0.6
3,100,137	-				-1.2
3,100,139	-				+0.3
3,100,147	-				-0.2
3,100,151	-				+1.4
3,100,171	-				-1.4
3,100,171	-				-2.2
3,100,173	+				+0.8
3,100,185	+				-2.3
3,100,185	+				+0.3
3,100,188	-				-0.8
3,100,214	-				-0.9
3,100,251	-				-0.4
3,100,260	-				-0.4
3,100,326	+		GFF3026	0.12	-1.1
3,100,381	+		GFF3026	0.19	+0.6
3,100,435	+		GFF3026	0.26	-0.1
3,100,440	+		GFF3026	0.27	+1.0
3,100,440	+		GFF3026	0.27	-0.4
3,100,443	-		GFF3026	0.27	-1.2
3,100,443	-		GFF3026	0.27	+1.8
3,100,443	-		GFF3026	0.27	-0.4
3,100,443	-		GFF3026	0.27	-0.5
3,100,449	+		GFF3026	0.28	+0.9
3,100,449	+		GFF3026	0.28	-0.0
3,100,457	-		GFF3026	0.29	+0.6
3,100,457	-		GFF3026	0.29	+0.0
3,100,457	-		GFF3026	0.29	+0.0
3,100,476	-		GFF3026	0.32	+0.1
3,100,479	+		GFF3026	0.32	-0.1
3,100,487	+		GFF3026	0.33	-2.0
3,100,487	-		GFF3026	0.33	+1.0
3,100,487	-		GFF3026	0.33	-0.8
3,100,500	+		GFF3026	0.35	-0.8
3,100,505	+		GFF3026	0.35	+1.5
3,100,505	+		GFF3026	0.35	-2.4
3,100,505	+		GFF3026	0.35	-0.4
3,100,505	+		GFF3026	0.35	+0.0
3,100,513	-		GFF3026	0.37	-0.4
3,100,513	-		GFF3026	0.37	-0.6
3,100,513	-		GFF3026	0.37	+3.5
3,100,513	-		GFF3026	0.37	-0.3
3,100,513	-		GFF3026	0.37	-0.7
3,100,513	-		GFF3026	0.37	+1.1
3,100,513	-		GFF3026	0.37	+1.0
3,100,513	-		GFF3026	0.37	-1.0
3,100,513	-		GFF3026	0.37	-0.4
3,100,513	-		GFF3026	0.37	+0.6
3,100,518	-		GFF3026	0.37	-0.2
3,100,537	-		GFF3026	0.40	+0.8
3,100,580	+		GFF3026	0.46	-1.4
3,100,594	-		GFF3026	0.47	+0.5
3,100,659	+		GFF3026	0.56	-0.2
3,100,662	-		GFF3026	0.56	-0.7
3,100,678	+		GFF3026	0.59	+0.3
3,100,686	-		GFF3026	0.60	-0.6
3,100,686	-		GFF3026	0.60	+0.3
3,100,688	+		GFF3026	0.60	+0.8
3,100,688	+		GFF3026	0.60	-0.2
3,100,696	-		GFF3026	0.61	-0.5
3,100,727	+		GFF3026	0.65	-1.5
3,100,732	+		GFF3026	0.66	+0.8
3,100,732	+		GFF3026	0.66	+0.9
3,100,732	+		GFF3026	0.66	+0.3
3,100,732	+		GFF3026	0.66	+0.8
3,100,735	-		GFF3026	0.66	+1.1
3,100,740	-		GFF3026	0.67	+0.0
3,100,740	-		GFF3026	0.67	+1.1
3,100,740	-		GFF3026	0.67	+0.6
3,100,742	+		GFF3026	0.67	-0.6
3,100,742	+		GFF3026	0.67	+0.1
3,100,742	+		GFF3026	0.67	+0.8
3,100,742	+		GFF3026	0.67	+0.1
3,100,742	+		GFF3026	0.67	+0.8
3,100,750	-		GFF3026	0.68	-1.1
3,100,750	-		GFF3026	0.68	+0.1
3,100,750	-		GFF3026	0.68	+0.3
3,100,750	-		GFF3026	0.68	+1.1
3,100,773	+		GFF3026	0.71	-0.1
3,100,781	-		GFF3026	0.72	-1.2
3,100,787	-		GFF3026	0.73	+1.2
3,100,798	-		GFF3026	0.75	+0.9
3,100,798	-		GFF3026	0.75	-1.7
3,100,800	+		GFF3026	0.75	+1.4
3,100,803	+		GFF3026	0.75	+0.7
3,100,808	-		GFF3026	0.76	+0.1
3,100,808	-		GFF3026	0.76	+0.2
3,100,808	-		GFF3026	0.76	+0.3
3,100,808	-		GFF3026	0.76	+0.7
3,100,808	-		GFF3026	0.76	-0.1
3,100,816	+		GFF3026	0.77	-0.6
3,100,834	+		GFF3026	0.80	+0.8
3,100,834	+		GFF3026	0.80	-0.1
3,100,834	+		GFF3026	0.80	+0.1
3,100,840	-		GFF3026	0.80	+1.5
3,100,842	-		GFF3026	0.81	+0.8
3,100,842	-		GFF3026	0.81	+0.1
3,100,859	+		GFF3026	0.83	+0.3
3,100,859	+		GFF3026	0.83	+0.5
3,100,859	+		GFF3026	0.83	-0.1
3,100,859	+		GFF3026	0.83	+0.4
3,100,867	-		GFF3026	0.84	-0.5
3,100,867	-		GFF3026	0.84	-1.0
3,100,867	-		GFF3026	0.84	-0.6
3,100,874	+		GFF3026	0.85	+0.5
3,100,879	+		GFF3026	0.86	+1.1
3,100,879	+		GFF3026	0.86	+1.3
3,100,879	+		GFF3026	0.86	+0.9
3,100,884	+		GFF3026	0.86	-2.2
3,100,884	+		GFF3026	0.86	-0.5
3,100,887	-		GFF3026	0.87	-2.7
3,100,892	-		GFF3026	0.87	+1.4
3,100,892	-		GFF3026	0.87	+1.1
3,100,892	-		GFF3026	0.87	-0.8
3,100,892	-		GFF3026	0.87	-0.7
3,100,892	-		GFF3026	0.87	+1.6
3,100,892	-		GFF3026	0.87	+0.5
3,100,892	-		GFF3026	0.87	+0.5
3,100,925	+				+0.8
3,100,933	-				-1.4
3,100,933	-				-0.6
3,100,933	-				-0.3
3,100,952	-				+0.2
3,100,969	-				+0.6
3,101,012	-				+1.3
3,101,017	+				-1.6
3,101,017	-				+0.2
3,101,031	+				+0.9
3,101,031	+				+0.7
3,101,031	+				-0.2
3,101,031	+				-0.0
3,101,031	+				-1.5
3,101,031	+				-0.2
3,101,031	+				-0.3
3,101,031	+				-1.1
3,101,031	+				+0.5
3,101,031	+				-0.0
3,101,031	+				+0.5
3,101,036	+				+1.6
3,101,041	+				-0.8
3,101,062	+				-0.5
3,101,069	-				+1.7
3,101,085	-				+0.1
3,101,123	+				-0.5
3,101,157	-		GFF3027	0.11	+1.3
3,101,198	+		GFF3027	0.15	-2.1
3,101,198	-		GFF3027	0.15	-1.6
3,101,247	+		GFF3027	0.20	-2.5
3,101,255	-		GFF3027	0.21	-0.1
3,101,315	+		GFF3027	0.26	-1.9
3,101,328	+		GFF3027	0.28	-2.7
3,101,345	+		GFF3027	0.29	+0.3
3,101,374	-		GFF3027	0.32	-0.3
3,101,401	+		GFF3027	0.34	-0.9
3,101,407	+		GFF3027	0.35	-0.9
3,101,407	+		GFF3027	0.35	-1.0
3,101,409	-		GFF3027	0.35	-1.8
3,101,409	-		GFF3027	0.35	+0.4
3,101,409	-		GFF3027	0.35	-1.2
3,101,412	+		GFF3027	0.36	-0.4
3,101,412	+		GFF3027	0.36	-0.1
3,101,412	+		GFF3027	0.36	-0.1
3,101,412	+		GFF3027	0.36	-1.4
3,101,412	+		GFF3027	0.36	-1.7
3,101,415	-		GFF3027	0.36	+1.4
3,101,420	-		GFF3027	0.36	+0.7
3,101,420	-		GFF3027	0.36	-2.7
3,101,424	+		GFF3027	0.37	+0.9
3,101,432	-		GFF3027	0.37	-3.3
3,101,439	-		GFF3027	0.38	-2.6
3,101,458	+		GFF3027	0.40	-1.7
3,101,485	+		GFF3027	0.42	+0.2
3,101,491	-		GFF3027	0.43	+0.0
3,101,496	+		GFF3027	0.43	-1.2
3,101,506	-		GFF3027	0.44	+0.0
3,101,523	+		GFF3027	0.46	-0.4
3,101,555	+		GFF3027	0.49	+0.3
3,101,560	+		GFF3027	0.50	-0.1
3,101,568	-		GFF3027	0.50	-2.2
3,101,621	-		GFF3027	0.55	-1.2
3,101,649	-		GFF3027	0.58	-0.8
3,101,649	-		GFF3027	0.58	-1.5
3,101,650	+		GFF3027	0.58	-1.5
3,101,651	+		GFF3027	0.58	+0.1
3,101,651	+		GFF3027	0.58	-0.8
3,101,651	+		GFF3027	0.58	-0.7
3,101,659	-		GFF3027	0.59	-1.4
3,101,671	+		GFF3027	0.60	-0.8
3,101,715	-		GFF3027	0.64	-2.8
3,101,741	+		GFF3027	0.67	-0.6
3,101,741	+		GFF3027	0.67	+0.3
3,101,741	+		GFF3027	0.67	-1.9
3,101,741	+		GFF3027	0.67	-0.1
3,101,746	+		GFF3027	0.67	-1.2
3,101,746	+		GFF3027	0.67	-0.3
3,101,749	-		GFF3027	0.68	+1.0
3,101,749	-		GFF3027	0.68	-0.3
3,101,751	+		GFF3027	0.68	-1.0
3,101,751	+		GFF3027	0.68	-1.3
3,101,751	+		GFF3027	0.68	-2.2
3,101,751	+		GFF3027	0.68	-0.7
3,101,751	+		GFF3027	0.68	-1.0
3,101,759	-		GFF3027	0.68	-3.3
3,101,784	-		GFF3027	0.71	+0.7
3,101,800	+		GFF3027	0.72	-1.7
3,101,803	+		GFF3027	0.73	-1.0
3,101,808	-		GFF3027	0.73	+0.0
3,101,833	+		GFF3027	0.75	+1.6
3,101,833	+		GFF3027	0.75	-0.6
3,101,833	+		GFF3027	0.75	-0.8
3,101,833	+		GFF3027	0.75	+0.5
3,101,833	+		GFF3027	0.75	-0.7
3,101,833	+		GFF3027	0.75	-0.2
3,101,833	+		GFF3027	0.75	-2.2
3,101,838	+		GFF3027	0.76	-1.8
3,101,838	+		GFF3027	0.76	-1.3
3,101,840	+		GFF3027	0.76	-0.5
3,101,859	+		GFF3027	0.78	+0.4
3,101,868	+		GFF3027	0.79	-0.7
3,101,872	-		GFF3027	0.79	+0.0
3,101,921	+		GFF3027	0.84	-2.0
3,101,926	+		GFF3027	0.84	-0.6
3,101,926	+		GFF3027	0.84	+0.5
3,101,931	+		GFF3027	0.85	-0.7
3,101,934	-		GFF3027	0.85	-0.9
3,101,934	-		GFF3027	0.85	-0.4
3,101,934	-		GFF3027	0.85	+0.9
3,101,934	-		GFF3027	0.85	-1.4
3,101,939	-		GFF3027	0.86	+1.0
3,101,939	-		GFF3027	0.86	-1.6
3,101,939	-		GFF3027	0.86	+0.2
3,101,939	-		GFF3027	0.86	-1.7
3,101,939	-		GFF3027	0.86	-0.5
3,101,939	-		GFF3027	0.86	+0.1
3,101,945	-		GFF3027	0.86	-0.8
3,101,947	+		GFF3027	0.86	-3.1
3,101,952	+		GFF3027	0.87	-2.3
3,101,952	-		GFF3027	0.87	-1.7
3,101,962	-		GFF3027	0.88	-0.2
3,101,970	-		GFF3027	0.89	-0.2
3,101,988	+				-0.6
3,101,996	-				-1.5
3,101,996	-				-1.8
3,101,996	-				-0.7
3,102,003	-				+0.0
3,102,003	-				-0.0
3,102,003	-				-0.8
3,102,009	-				-0.3
3,102,009	-				-1.6
3,102,028	-				-0.7
3,102,069	+				-1.5
3,102,150	+				-0.0
3,102,158	-				-1.9
3,102,158	-				+0.4
3,102,167	+				+0.5
3,102,167	+				-0.7
3,102,174	-				+0.4
3,102,176	+				-1.3
3,102,176	+				+1.0
3,102,184	-				+0.8
3,102,184	-				+1.3
3,102,196	+				-0.8
3,102,204	-				-1.5
3,102,205	+				+0.0
3,102,205	+				+0.8
3,102,205	+				-1.5
3,102,213	-				-2.0
3,102,239	+		GFF3028	0.10	+0.2
3,102,248	+		GFF3028	0.11	-1.1
3,102,274	-		GFF3028	0.12	+2.3
3,102,282	+		GFF3028	0.13	-1.1
3,102,291	+		GFF3028	0.14	-0.2
3,102,299	-		GFF3028	0.14	-0.0
3,102,321	-		GFF3028	0.16	+0.3
3,102,331	+		GFF3028	0.16	+0.9
3,102,340	+		GFF3028	0.17	-0.1
3,102,361	+		GFF3028	0.18	+0.9
3,102,361	+		GFF3028	0.18	-0.1
3,102,369	-		GFF3028	0.19	+1.2
3,102,369	-		GFF3028	0.19	-1.0
3,102,369	-		GFF3028	0.19	-1.6
3,102,369	-		GFF3028	0.19	-0.2
3,102,369	-		GFF3028	0.19	+0.4
3,102,369	-		GFF3028	0.19	-0.6
3,102,369	-		GFF3028	0.19	-0.4
3,102,421	-		GFF3028	0.22	-0.7
3,102,421	-		GFF3028	0.22	-0.7
3,102,421	-		GFF3028	0.22	-0.3
3,102,426	-		GFF3028	0.23	+1.0
3,102,426	-		GFF3028	0.23	-0.3
3,102,426	-		GFF3028	0.23	-0.5
3,102,431	+		GFF3028	0.23	+0.1
3,102,489	+		GFF3028	0.27	+0.1
3,102,489	+		GFF3028	0.27	-1.1
3,102,497	-		GFF3028	0.27	-0.8
3,102,497	-		GFF3028	0.27	+1.5
3,102,536	+		GFF3028	0.30	-0.5
3,102,544	-		GFF3028	0.30	-2.2
3,102,544	-		GFF3028	0.30	+0.2
3,102,544	-		GFF3028	0.30	-0.8
3,102,544	-		GFF3028	0.30	-1.0
3,102,544	-		GFF3028	0.30	-0.3
3,102,553	+		GFF3028	0.31	-1.4
3,102,559	+		GFF3028	0.31	-0.7
3,102,577	+		GFF3028	0.33	-0.9
3,102,614	-		GFF3028	0.35	-1.7
3,102,693	+		GFF3028	0.40	+0.0
3,102,699	-		GFF3028	0.41	-0.1
3,102,729	+		GFF3028	0.43	-2.4
3,102,735	-		GFF3028	0.43	+0.4
3,102,737	-		GFF3028	0.43	-0.5
3,102,737	-		GFF3028	0.43	-0.5
3,102,737	-		GFF3028	0.43	-2.1
3,102,745	-		GFF3028	0.44	-0.9
3,102,747	-		GFF3028	0.44	-0.0
3,102,755	+		GFF3028	0.45	-1.6
3,102,772	+		GFF3028	0.46	-0.0
3,102,772	+		GFF3028	0.46	-1.4
3,102,777	+		GFF3028	0.46	-1.3
3,102,777	+		GFF3028	0.46	-0.4
3,102,777	+		GFF3028	0.46	+0.1
3,102,777	+		GFF3028	0.46	+0.0
3,102,777	+		GFF3028	0.46	-0.1
3,102,793	+		GFF3028	0.47	-0.4
3,102,926	+		GFF3028	0.56	+0.4
3,102,931	+		GFF3028	0.56	+0.2
3,102,931	+		GFF3028	0.56	+1.3
3,102,931	+		GFF3028	0.56	-0.1
3,102,939	-		GFF3028	0.57	+0.1
3,102,958	+		GFF3028	0.58	-1.0
3,102,983	+		GFF3028	0.60	-1.0
3,102,993	+		GFF3028	0.60	-0.8
3,102,993	+		GFF3028	0.60	+0.0
3,102,993	+		GFF3028	0.60	-0.3
3,102,993	+		GFF3028	0.60	-0.8
3,102,993	+		GFF3028	0.60	-1.5
3,103,001	-		GFF3028	0.61	-0.8
3,103,001	-		GFF3028	0.61	+0.9
3,103,001	-		GFF3028	0.61	+0.5
3,103,023	-		GFF3028	0.62	-0.4
3,103,060	-		GFF3028	0.65	-0.1
3,103,072	+		GFF3028	0.66	+1.3
3,103,080	-		GFF3028	0.66	+1.8