Strain Fitness in Sphingobium sp. HT1-2 around GFF2868

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,924,489	-		GFF2866	0.41	+0.5
2,924,495	-		GFF2866	0.41	-1.6
2,924,530	+		GFF2866	0.45	-0.3
2,924,530	-		GFF2866	0.45	-0.0
2,924,540	-		GFF2866	0.47	-0.2
2,924,548	-		GFF2866	0.47	+0.0
2,924,551	+		GFF2866	0.48	+0.7
2,924,557	-		GFF2866	0.49	-1.2
2,924,575	+		GFF2866	0.51	-1.6
2,924,575	+		GFF2866	0.51	-0.8
2,924,583	-		GFF2866	0.52	-0.0
2,924,592	+		GFF2866	0.53	-0.9
2,924,610	+		GFF2866	0.55	-0.7
2,924,615	+		GFF2866	0.55	+0.7
2,924,618	-		GFF2866	0.56	-0.2
2,924,619	-		GFF2866	0.56	-0.9
2,924,623	-		GFF2866	0.56	-0.9
2,924,629	-		GFF2866	0.57	-0.1
2,924,635	-		GFF2866	0.58	-1.3
2,924,673	+		GFF2866	0.62	-0.4
2,924,681	-		GFF2866	0.63	+0.9
2,924,685	+		GFF2866	0.64	+0.3
2,924,686	-		GFF2866	0.64	+0.2
2,924,691	+		GFF2866	0.64	+0.1
2,924,691	+		GFF2866	0.64	-1.3
2,924,694	-		GFF2866	0.65	+0.4
2,924,696	+		GFF2866	0.65	+0.5
2,924,699	-		GFF2866	0.65	+0.0
2,924,699	-		GFF2866	0.65	-0.3
2,924,704	-		GFF2866	0.66	-1.2
2,924,724	-		GFF2866	0.68	+0.9
2,924,734	+		GFF2866	0.69	-0.9
2,924,734	+		GFF2866	0.69	+0.1
2,924,739	+		GFF2866	0.70	+0.1
2,924,740	-		GFF2866	0.70	+0.9
2,924,740	-		GFF2866	0.70	-1.2
2,924,742	-		GFF2866	0.70	-1.2
2,924,742	-		GFF2866	0.70	-0.8
2,924,752	+		GFF2866	0.71	-1.6
2,924,752	+		GFF2866	0.71	+0.0
2,924,760	+		GFF2866	0.72	+0.9
2,924,760	-		GFF2866	0.72	+0.0
2,924,760	-		GFF2866	0.72	-0.1
2,924,784	+		GFF2866	0.75	+0.1
2,924,784	+		GFF2866	0.75	+1.0
2,924,814	+		GFF2866	0.79	-1.0
2,924,814	+		GFF2866	0.79	-1.2
2,924,832	-		GFF2866	0.81	+0.3
2,924,856	-		GFF2866	0.84	+1.4
2,924,865	+		GFF2866	0.85	-1.5
2,924,871	-		GFF2866	0.86	+1.3
2,924,888	-		GFF2866	0.88	-1.0
2,924,905	+		GFF2866	0.90	+1.0
2,924,911	+				+0.0
2,924,920	+				-0.3
2,924,931	+				-2.3
2,924,931	+				-0.4
2,924,931	+				-1.5
2,924,931	+				-1.8
2,924,931	+				+0.2
2,924,931	-				+0.4
2,924,939	-				-0.4
2,924,939	-				-2.2
2,924,939	-				+1.7
2,924,939	-				-0.1
2,924,939	-				+1.5
2,924,939	-				-0.5
2,924,949	+				-1.2
2,924,985	-				-0.5
2,925,004	+				-1.1
2,925,004	-				+0.9
2,925,012	-				-0.2
2,925,012	-				-0.6
2,925,020	+				+1.2
2,925,021	+				-0.8
2,925,029	-				-1.3
2,925,052	+		GFF2867	0.15	-1.7
2,925,064	+		GFF2867	0.18	-0.4
2,925,072	-		GFF2867	0.20	+0.3
2,925,072	-		GFF2867	0.20	+0.8
2,925,072	-		GFF2867	0.20	+0.4
2,925,082	-		GFF2867	0.22	+0.5
2,925,100	+		GFF2867	0.26	+0.5
2,925,108	-		GFF2867	0.28	-0.1
2,925,115	-		GFF2867	0.30	-1.6
2,925,128	-		GFF2867	0.33	+0.0
2,925,128	-		GFF2867	0.33	-0.4
2,925,131	-		GFF2867	0.34	-0.8
2,925,160	+		GFF2867	0.41	+1.7
2,925,160	+		GFF2867	0.41	-2.3
2,925,160	+		GFF2867	0.41	-0.8
2,925,160	+		GFF2867	0.41	+0.4
2,925,160	+		GFF2867	0.41	-0.3
2,925,160	+		GFF2867	0.41	-0.2
2,925,168	-		GFF2867	0.43	+1.0
2,925,168	-		GFF2867	0.43	-0.3
2,925,168	-		GFF2867	0.43	+1.2
2,925,168	-		GFF2867	0.43	-0.6
2,925,168	-		GFF2867	0.43	+0.1
2,925,168	-		GFF2867	0.43	-0.2
2,925,171	+		GFF2867	0.44	+0.2
2,925,185	+		GFF2867	0.47	+0.1
2,925,193	-		GFF2867	0.49	-0.2
2,925,193	-		GFF2867	0.49	+0.2
2,925,266	+		GFF2867	0.67	-0.3
2,925,266	+		GFF2867	0.67	-0.1
2,925,286	-		GFF2867	0.72	-0.2
2,925,286	-		GFF2867	0.72	-0.3
2,925,286	-		GFF2867	0.72	-1.3
2,925,298	+		GFF2867	0.75	-0.8
2,925,298	+		GFF2867	0.75	-0.5
2,925,311	+		GFF2867	0.79	+0.6
2,925,311	+		GFF2867	0.79	-0.1
2,925,311	+		GFF2867	0.79	+0.2
2,925,311	+		GFF2867	0.79	-0.3
2,925,314	-		GFF2867	0.79	+1.0
2,925,319	-		GFF2867	0.80	-1.8
2,925,319	-		GFF2867	0.80	+0.1
2,925,319	-		GFF2867	0.80	+0.8
2,925,341	-		GFF2867	0.86	-0.0
2,925,341	-		GFF2867	0.86	-1.1
2,925,395	+				-1.2
2,925,395	+				+0.2
2,925,403	-				-1.3
2,925,403	-				+0.8
2,925,403	-				-0.9
2,925,408	-				-0.0
2,925,429	-				-1.0
2,925,439	+				+0.6
2,925,444	+				+0.2
2,925,473	-				-1.2
2,925,479	+				-0.3
2,925,479	+				-1.5
2,925,479	+				-0.1
2,925,479	+				-1.5
2,925,479	+				+0.7
2,925,479	+				-0.7
2,925,479	+				-0.8
2,925,479	+				-0.6
2,925,487	-				+0.4
2,925,487	-				-0.1
2,925,487	-				-0.7
2,925,487	-				-1.1
2,925,487	-				+0.2
2,925,487	-				+1.9
2,925,487	-				-0.1
2,925,526	-				+0.3
2,925,540	-				-0.6
2,925,542	+				-0.1
2,925,574	+				+0.2
2,925,578	-				+1.4
2,925,583	+				+1.3
2,925,588	+		GFF2868	0.10	-0.4
2,925,588	+		GFF2868	0.10	-0.5
2,925,628	+		GFF2868	0.14	-0.1
2,925,631	-		GFF2868	0.15	+1.2
2,925,645	+		GFF2868	0.16	-0.9
2,925,658	-		GFF2868	0.17	-1.1
2,925,660	-		GFF2868	0.17	-0.8
2,925,663	-		GFF2868	0.18	+0.7
2,925,665	+		GFF2868	0.18	+0.9
2,925,673	-		GFF2868	0.19	-0.6
2,925,678	-		GFF2868	0.19	-0.1
2,925,711	-		GFF2868	0.22	-0.1
2,925,713	+		GFF2868	0.23	+0.5
2,925,713	+		GFF2868	0.23	-0.6
2,925,732	+		GFF2868	0.24	+0.2
2,925,760	-		GFF2868	0.27	-0.4
2,925,769	+		GFF2868	0.28	-0.5
2,925,769	+		GFF2868	0.28	-1.1
2,925,770	+		GFF2868	0.28	-0.3
2,925,774	+		GFF2868	0.29	+0.4
2,925,777	-		GFF2868	0.29	+1.0
2,925,777	-		GFF2868	0.29	+0.2
2,925,796	+		GFF2868	0.31	+0.6
2,925,796	+		GFF2868	0.31	+0.3
2,925,806	-		GFF2868	0.32	-1.1
2,925,859	-		GFF2868	0.37	-0.2
2,925,862	-		GFF2868	0.37	-0.0
2,925,870	+		GFF2868	0.38	-0.4
2,925,870	+		GFF2868	0.38	+1.9
2,925,870	+		GFF2868	0.38	-0.3
2,925,870	+		GFF2868	0.38	-0.8
2,925,870	+		GFF2868	0.38	-1.9
2,925,870	+		GFF2868	0.38	-1.0
2,925,870	+		GFF2868	0.38	-1.2
2,925,878	-		GFF2868	0.39	+1.5
2,925,878	-		GFF2868	0.39	-0.0
2,925,878	-		GFF2868	0.39	-0.3
2,925,893	-		GFF2868	0.40	+1.1
2,925,930	-		GFF2868	0.44	-0.3
2,925,932	-		GFF2868	0.44	-0.3
2,925,963	-		GFF2868	0.47	-1.7
2,925,973	-		GFF2868	0.48	+1.0
2,925,973	-		GFF2868	0.48	+0.0
2,925,977	+		GFF2868	0.48	+1.0
2,925,991	+		GFF2868	0.50	+1.0
2,926,028	-		GFF2868	0.53	+0.8
2,926,041	-		GFF2868	0.55	-0.9
2,926,077	+		GFF2868	0.58	-2.5
2,926,080	-		GFF2868	0.58	+0.6
2,926,085	-		GFF2868	0.59	+0.5
2,926,085	-		GFF2868	0.59	-0.4
2,926,085	-		GFF2868	0.59	-0.2
2,926,134	-		GFF2868	0.64	-0.5
2,926,134	-		GFF2868	0.64	+0.5
2,926,144	+		GFF2868	0.65	-0.4
2,926,175	-		GFF2868	0.68	-0.1
2,926,189	-		GFF2868	0.69	+0.4
2,926,201	+		GFF2868	0.70	+0.4
2,926,204	-		GFF2868	0.71	+1.2
2,926,209	-		GFF2868	0.71	+0.7
2,926,209	-		GFF2868	0.71	-0.3
2,926,216	+		GFF2868	0.72	-2.6
2,926,222	+		GFF2868	0.72	+0.5
2,926,230	-		GFF2868	0.73	+0.2
2,926,247	-		GFF2868	0.75	+0.2
2,926,247	-		GFF2868	0.75	+0.4
2,926,265	+		GFF2868	0.77	-3.0
2,926,292	-		GFF2868	0.79	-1.0
2,926,317	+		GFF2868	0.82	-2.6
2,926,320	-		GFF2868	0.82	-0.5
2,926,344	-		GFF2868	0.84	+0.1
2,926,394	+		GFF2868	0.89	-0.7
2,926,402	-				-0.2
2,926,413	+				-0.1
2,926,413	+				-0.2
2,926,413	+				+0.6
2,926,416	-				+0.7
2,926,421	-				+1.2
2,926,421	-				-0.9
2,926,435	+				-0.6
2,926,448	-				+0.5
2,926,455	+				-0.3
2,926,455	+				-0.2
2,926,455	+				-0.9
2,926,455	+				-0.8
2,926,455	+				-0.9
2,926,455	+				-1.1
2,926,455	+				+0.4
2,926,455	+				-1.0
2,926,455	+				+0.0
2,926,455	+				+0.9
2,926,455	+				+0.6
2,926,463	-				+0.8
2,926,463	-				+0.5
2,926,463	-				-0.0
2,926,463	-				-0.2
2,926,463	-				+0.2
2,926,468	-				+0.3
2,926,468	-				-1.1
2,926,470	+				-0.3
2,926,478	-				-0.0
2,926,508	+				-1.6
2,926,513	+				-1.3
2,926,513	+				-0.6
2,926,516	-				+0.8
2,926,521	-				+1.0
2,926,535	-				+0.5
2,926,550	-				-1.2
2,926,555	-				-0.5
2,926,564	+				-0.1
2,926,577	-				-0.0
2,926,591	-		GFF2869	0.10	-0.2
2,926,615	+		GFF2869	0.13	+0.7
2,926,620	+		GFF2869	0.13	-0.0
2,926,620	+		GFF2869	0.13	-0.4
2,926,623	-		GFF2869	0.14	-0.1
2,926,625	+		GFF2869	0.14	-0.5
2,926,628	-		GFF2869	0.14	-0.6
2,926,630	-		GFF2869	0.14	+0.4
2,926,667	+		GFF2869	0.19	+1.2
2,926,667	+		GFF2869	0.19	+0.3
2,926,667	+		GFF2869	0.19	-0.5
2,926,688	-		GFF2869	0.21	-0.4
2,926,688	-		GFF2869	0.21	-0.8
2,926,697	-		GFF2869	0.22	-0.1
2,926,706	+		GFF2869	0.23	-0.4
2,926,707	-		GFF2869	0.23	+1.2
2,926,713	+		GFF2869	0.24	-0.5
2,926,727	+		GFF2869	0.25	+0.7
2,926,735	-		GFF2869	0.26	-1.5
2,926,735	-		GFF2869	0.26	+0.4
2,926,735	-		GFF2869	0.26	+0.1
2,926,739	+		GFF2869	0.27	+0.2
2,926,746	+		GFF2869	0.27	+0.3
2,926,771	+		GFF2869	0.30	-2.5
2,926,771	+		GFF2869	0.30	-1.1
2,926,784	+		GFF2869	0.32	-1.3
2,926,845	+		GFF2869	0.38	+0.1
2,926,845	+		GFF2869	0.38	-0.6
2,926,846	+		GFF2869	0.38	-1.2
2,926,853	+		GFF2869	0.39	-0.5
2,926,853	+		GFF2869	0.39	-1.6
2,926,877	+		GFF2869	0.42	-0.6
2,926,916	-		GFF2869	0.46	-1.2
2,926,916	-		GFF2869	0.46	+0.3
2,926,942	+		GFF2869	0.49	-1.3
2,926,942	+		GFF2869	0.49	-0.0
2,926,942	+		GFF2869	0.49	+1.1
2,926,942	+		GFF2869	0.49	-0.2
2,926,942	+		GFF2869	0.49	-1.3
2,926,942	+		GFF2869	0.49	-2.1
2,926,942	+		GFF2869	0.49	+0.3
2,926,942	+		GFF2869	0.49	-0.7
2,926,950	-		GFF2869	0.50	+0.9
2,926,950	-		GFF2869	0.50	-1.2
2,926,950	-		GFF2869	0.50	+0.1
2,926,950	-		GFF2869	0.50	-0.5
2,926,950	-		GFF2869	0.50	+0.2
2,926,950	-		GFF2869	0.50	-1.3
2,926,961	+		GFF2869	0.51	+0.4
2,926,966	+		GFF2869	0.52	-1.0
2,926,976	+		GFF2869	0.53	+0.3
2,926,976	+		GFF2869	0.53	-0.6
2,926,976	+		GFF2869	0.53	-0.3
2,926,976	+		GFF2869	0.53	-1.9
2,926,984	-		GFF2869	0.54	-0.8
2,926,984	-		GFF2869	0.54	+0.3
2,926,984	-		GFF2869	0.54	+0.4
2,926,984	-		GFF2869	0.54	+0.4
2,926,984	-		GFF2869	0.54	+0.2
2,926,996	+		GFF2869	0.55	+0.4
2,927,026	-		GFF2869	0.59	-1.4
2,927,104	+		GFF2869	0.67	-1.2
2,927,107	-		GFF2869	0.68	+0.4
2,927,107	-		GFF2869	0.68	+0.3
2,927,111	+		GFF2869	0.68	-1.7
2,927,174	-		GFF2869	0.75	-0.2
2,927,177	+		GFF2869	0.75	-1.2
2,927,177	+		GFF2869	0.75	-0.6
2,927,177	+		GFF2869	0.75	-0.5
2,927,177	+		GFF2869	0.75	-0.3
2,927,185	-		GFF2869	0.76	-0.3
2,927,185	-		GFF2869	0.76	-0.5
2,927,185	-		GFF2869	0.76	+0.7
2,927,193	+		GFF2869	0.77	+0.6
2,927,194	+		GFF2869	0.77	-1.7
2,927,201	-		GFF2869	0.78	-1.3
2,927,201	-		GFF2869	0.78	+0.4
2,927,201	-		GFF2869	0.78	+0.4
2,927,202	-		GFF2869	0.78	-0.5
2,927,211	+		GFF2869	0.79	-0.0
2,927,224	-		GFF2869	0.81	+0.4
2,927,224	-		GFF2869	0.81	-0.2
2,927,244	-		GFF2869	0.83	-0.5
2,927,250	+		GFF2869	0.84	+0.4
2,927,250	+		GFF2869	0.84	+0.4
2,927,250	+		GFF2869	0.84	+0.2
2,927,250	+		GFF2869	0.84	-1.3
2,927,250	+		GFF2869	0.84	-0.3
2,927,258	-		GFF2869	0.84	+0.2
2,927,258	-		GFF2869	0.84	-0.5
2,927,258	-		GFF2869	0.84	-0.5
2,927,258	-		GFF2869	0.84	+1.2
2,927,276	-		GFF2869	0.86	+0.9
2,927,301	+		GFF2869	0.89	+1.2
2,927,309	-				-0.2
2,927,327	+				-1.3
2,927,327	+				-0.4
2,927,327	+				-1.3
2,927,332	+				-0.3
2,927,335	-				-0.5
2,927,340	-				+0.4
2,927,350	+				-0.4
2,927,351	-				+0.5
2,927,358	-				+1.1
2,927,358	-				+0.3
2,927,358	-				+0.4
2,927,369	+				+0.3
2,927,372	-				-1.2
2,927,372	-				-0.2
2,927,372	-				-1.5
2,927,377	-				-0.3
2,927,410	+				+0.3
2,927,420	+				-0.7
2,927,452	+				-0.7
2,927,499	+				-1.8