Strain Fitness in Sphingobium sp. HT1-2 around GFF2820

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,861,105	+				+0.9
2,861,113	-				+0.4
2,861,118	+				+0.4
2,861,118	+				+0.7
2,861,118	+				+0.7
2,861,118	+				+0.3
2,861,120	+				-1.5
2,861,126	+				-2.2
2,861,126	-				-1.0
2,861,164	+		GFF2819	0.14	+0.3
2,861,164	+		GFF2819	0.14	+0.2
2,861,180	+		GFF2819	0.16	+0.5
2,861,198	+		GFF2819	0.18	+0.5
2,861,210	+		GFF2819	0.19	-1.1
2,861,235	-		GFF2819	0.22	-0.3
2,861,235	-		GFF2819	0.22	-0.9
2,861,244	+		GFF2819	0.23	-2.6
2,861,244	+		GFF2819	0.23	-0.1
2,861,244	+		GFF2819	0.23	+0.4
2,861,245	-		GFF2819	0.23	-1.0
2,861,252	-		GFF2819	0.24	-0.1
2,861,252	-		GFF2819	0.24	-1.6
2,861,252	-		GFF2819	0.24	+0.2
2,861,262	-		GFF2819	0.25	-0.1
2,861,263	+		GFF2819	0.25	+0.1
2,861,263	+		GFF2819	0.25	-1.4
2,861,263	+		GFF2819	0.25	-0.9
2,861,271	-		GFF2819	0.26	-0.2
2,861,271	-		GFF2819	0.26	+0.3
2,861,273	+		GFF2819	0.26	-1.3
2,861,276	-		GFF2819	0.26	-0.0
2,861,281	-		GFF2819	0.27	+0.7
2,861,281	-		GFF2819	0.27	-0.4
2,861,281	-		GFF2819	0.27	-0.5
2,861,288	-		GFF2819	0.28	+0.1
2,861,297	+		GFF2819	0.29	+0.6
2,861,304	-		GFF2819	0.30	+0.7
2,861,304	-		GFF2819	0.30	-1.6
2,861,305	-		GFF2819	0.30	-1.2
2,861,305	-		GFF2819	0.30	-2.2
2,861,305	-		GFF2819	0.30	+0.5
2,861,305	-		GFF2819	0.30	+0.8
2,861,312	+		GFF2819	0.30	+0.3
2,861,320	+		GFF2819	0.31	-0.2
2,861,320	+		GFF2819	0.31	+0.3
2,861,328	-		GFF2819	0.32	-0.5
2,861,328	-		GFF2819	0.32	-0.1
2,861,328	-		GFF2819	0.32	-0.4
2,861,328	-		GFF2819	0.32	-0.3
2,861,328	-		GFF2819	0.32	+1.3
2,861,351	+		GFF2819	0.35	+0.2
2,861,354	-		GFF2819	0.35	-1.3
2,861,356	+		GFF2819	0.35	-0.0
2,861,376	-		GFF2819	0.38	-0.2
2,861,399	+		GFF2819	0.40	+0.1
2,861,405	-		GFF2819	0.41	-0.5
2,861,410	+		GFF2819	0.41	+0.8
2,861,410	+		GFF2819	0.41	+1.3
2,861,415	+		GFF2819	0.42	-0.2
2,861,425	+		GFF2819	0.43	-0.8
2,861,425	+		GFF2819	0.43	-1.3
2,861,425	+		GFF2819	0.43	+0.0
2,861,430	+		GFF2819	0.44	+0.9
2,861,433	-		GFF2819	0.44	+0.0
2,861,433	-		GFF2819	0.44	-0.4
2,861,440	+		GFF2819	0.45	-1.0
2,861,440	-		GFF2819	0.45	-1.7
2,861,457	+		GFF2819	0.47	-0.2
2,861,465	-		GFF2819	0.47	-1.8
2,861,484	+		GFF2819	0.50	-1.2
2,861,484	+		GFF2819	0.50	-0.7
2,861,489	+		GFF2819	0.50	-0.0
2,861,489	+		GFF2819	0.50	-0.1
2,861,489	+		GFF2819	0.50	+0.9
2,861,492	-		GFF2819	0.51	+0.1
2,861,494	+		GFF2819	0.51	+0.3
2,861,494	+		GFF2819	0.51	+0.4
2,861,497	-		GFF2819	0.51	+0.0
2,861,502	-		GFF2819	0.52	-1.1
2,861,515	-		GFF2819	0.53	+1.5
2,861,522	+		GFF2819	0.54	-0.6
2,861,525	-		GFF2819	0.54	-0.0
2,861,556	+		GFF2819	0.58	+0.1
2,861,561	+		GFF2819	0.58	-0.1
2,861,564	-		GFF2819	0.59	-1.5
2,861,632	-		GFF2819	0.66	+0.5
2,861,640	+		GFF2819	0.67	-0.2
2,861,664	-		GFF2819	0.70	-0.6
2,861,675	+		GFF2819	0.71	+0.6
2,861,679	-		GFF2819	0.71	-0.9
2,861,721	+		GFF2819	0.76	-0.1
2,861,721	+		GFF2819	0.76	-0.6
2,861,721	-		GFF2819	0.76	-1.9
2,861,729	-		GFF2819	0.77	-1.9
2,861,731	+		GFF2819	0.77	-0.3
2,861,731	-		GFF2819	0.77	+0.3
2,861,734	-		GFF2819	0.77	+0.1
2,861,739	+		GFF2819	0.78	-0.1
2,861,739	+		GFF2819	0.78	+0.5
2,861,739	+		GFF2819	0.78	-1.6
2,861,739	+		GFF2819	0.78	-0.4
2,861,739	+		GFF2819	0.78	-0.6
2,861,744	+		GFF2819	0.79	+0.9
2,861,747	-		GFF2819	0.79	+1.0
2,861,747	-		GFF2819	0.79	-1.7
2,861,747	-		GFF2819	0.79	-0.3
2,861,747	-		GFF2819	0.79	-0.9
2,861,751	-		GFF2819	0.79	+0.4
2,861,751	-		GFF2819	0.79	+0.7
2,861,751	-		GFF2819	0.79	-0.3
2,861,753	-		GFF2819	0.80	+0.9
2,861,766	+		GFF2819	0.81	+1.0
2,861,766	+		GFF2819	0.81	-1.9
2,861,766	+		GFF2819	0.81	+0.1
2,861,766	-		GFF2819	0.81	-0.3
2,861,774	-		GFF2819	0.82	-0.2
2,861,774	-		GFF2819	0.82	-1.6
2,861,774	-		GFF2819	0.82	-0.0
2,861,774	-		GFF2819	0.82	-1.3
2,861,776	+		GFF2819	0.82	-1.0
2,861,776	-		GFF2819	0.82	-1.2
2,861,776	-		GFF2819	0.82	-2.1
2,861,779	-		GFF2819	0.82	+0.9
2,861,794	+		GFF2819	0.84	-0.4
2,861,817	-		GFF2819	0.87	-1.3
2,861,843	+		GFF2819	0.90	+0.4
2,861,861	+				+0.9
2,861,862	+				-2.9
2,861,866	+				-0.6
2,861,869	-				+0.4
2,861,873	+				+0.2
2,861,873	+				+0.2
2,861,873	+				-0.3
2,861,873	+				-0.4
2,861,881	-				-1.3
2,861,881	-				-0.4
2,861,881	-				+0.7
2,861,881	-				-1.1
2,861,881	-				-0.6
2,861,888	-				-1.2
2,861,888	-				-0.2
2,861,890	+				-1.3
2,861,926	-				+0.3
2,861,969	+				-1.8
2,861,971	+				-0.5
2,861,971	+				+0.4
2,861,976	-				-0.8
2,861,977	-				+1.3
2,861,977	-				+0.0
2,861,979	-				-0.0
2,862,042	-				+0.1
2,862,065	+				-1.1
2,862,119	+				+0.3
2,862,119	+				-1.0
2,862,127	-				+0.9
2,862,170	+				-1.0
2,862,170	+				+0.7
2,862,181	+		GFF2820	0.10	+1.2
2,862,186	-		GFF2820	0.11	-1.6
2,862,189	-		GFF2820	0.11	-0.6
2,862,194	-		GFF2820	0.12	-0.3
2,862,211	-		GFF2820	0.14	-0.1
2,862,216	-		GFF2820	0.15	+0.2
2,862,217	-		GFF2820	0.15	+0.4
2,862,242	+		GFF2820	0.18	-0.9
2,862,243	+		GFF2820	0.18	-0.8
2,862,244	+		GFF2820	0.18	+0.7
2,862,250	-		GFF2820	0.19	-2.0
2,862,250	-		GFF2820	0.19	-0.5
2,862,252	-		GFF2820	0.19	+0.6
2,862,252	-		GFF2820	0.19	-2.1
2,862,270	-		GFF2820	0.21	-0.3
2,862,272	-		GFF2820	0.22	-1.2
2,862,272	-		GFF2820	0.22	-1.0
2,862,272	-		GFF2820	0.22	-0.8
2,862,290	+		GFF2820	0.24	+0.8
2,862,298	-		GFF2820	0.25	-0.0
2,862,298	-		GFF2820	0.25	-2.2
2,862,298	-		GFF2820	0.25	-0.2
2,862,312	+		GFF2820	0.27	+0.2
2,862,317	+		GFF2820	0.27	-1.5
2,862,319	-		GFF2820	0.28	+0.9
2,862,321	+		GFF2820	0.28	-0.3
2,862,321	+		GFF2820	0.28	-0.1
2,862,321	+		GFF2820	0.28	-0.3
2,862,321	+		GFF2820	0.28	-1.8
2,862,325	-		GFF2820	0.28	+0.8
2,862,325	-		GFF2820	0.28	-0.5
2,862,329	-		GFF2820	0.29	+0.2
2,862,359	-		GFF2820	0.33	+0.4
2,862,366	+		GFF2820	0.34	-0.7
2,862,382	-		GFF2820	0.36	+1.0
2,862,420	+		GFF2820	0.40	-0.1
2,862,420	+		GFF2820	0.40	+0.8
2,862,439	+		GFF2820	0.43	+1.1
2,862,447	-		GFF2820	0.44	-0.8
2,862,466	+		GFF2820	0.46	+1.1
2,862,469	-		GFF2820	0.47	-1.1
2,862,471	+		GFF2820	0.47	+1.8
2,862,476	+		GFF2820	0.47	+1.0
2,862,476	+		GFF2820	0.47	-0.7
2,862,479	-		GFF2820	0.48	+0.1
2,862,479	-		GFF2820	0.48	+0.0
2,862,484	-		GFF2820	0.48	-1.0
2,862,484	-		GFF2820	0.48	+0.5
2,862,484	-		GFF2820	0.48	-0.5
2,862,484	-		GFF2820	0.48	-1.2
2,862,486	+		GFF2820	0.49	-0.5
2,862,493	+		GFF2820	0.50	+0.4
2,862,493	+		GFF2820	0.50	+1.2
2,862,501	-		GFF2820	0.51	-1.3
2,862,513	-		GFF2820	0.52	+1.9
2,862,513	-		GFF2820	0.52	-0.3
2,862,543	-		GFF2820	0.56	-0.0
2,862,550	-		GFF2820	0.57	-0.6
2,862,607	+		GFF2820	0.64	-0.2
2,862,609	-		GFF2820	0.64	+0.8
2,862,638	-		GFF2820	0.68	-0.2
2,862,641	-		GFF2820	0.68	+0.7
2,862,659	-		GFF2820	0.71	-0.8
2,862,661	+		GFF2820	0.71	-1.9
2,862,661	+		GFF2820	0.71	-0.1
2,862,661	+		GFF2820	0.71	-2.3
2,862,661	+		GFF2820	0.71	-2.1
2,862,661	+		GFF2820	0.71	+0.4
2,862,669	-		GFF2820	0.72	-0.8
2,862,669	-		GFF2820	0.72	+0.5
2,862,669	-		GFF2820	0.72	+0.4
2,862,669	-		GFF2820	0.72	+0.9
2,862,669	-		GFF2820	0.72	-1.6
2,862,679	-		GFF2820	0.73	+0.3
2,862,679	-		GFF2820	0.73	-0.3
2,862,679	-		GFF2820	0.73	+0.9
2,862,679	-		GFF2820	0.73	-0.1
2,862,679	-		GFF2820	0.73	+0.2
2,862,684	-		GFF2820	0.74	-0.1
2,862,689	+		GFF2820	0.74	-1.2
2,862,689	+		GFF2820	0.74	+0.6
2,862,736	+		GFF2820	0.80	+0.5
2,862,741	+		GFF2820	0.81	-1.2
2,862,743	+		GFF2820	0.81	-1.0
2,862,744	-		GFF2820	0.81	+0.8
2,862,744	-		GFF2820	0.81	+0.3
2,862,749	-		GFF2820	0.82	-0.2
2,862,749	-		GFF2820	0.82	-1.2
2,862,750	-		GFF2820	0.82	+0.8
2,862,774	+		GFF2820	0.85	-0.4
2,862,779	+		GFF2820	0.86	-0.2
2,862,779	+		GFF2820	0.86	-0.8
2,862,787	-		GFF2820	0.87	-0.3
2,862,789	+		GFF2820	0.87	+0.0
2,862,791	+		GFF2820	0.87	-0.6
2,862,791	+		GFF2820	0.87	-0.1
2,862,796	+		GFF2820	0.88	+0.2
2,862,796	+		GFF2820	0.88	-0.6
2,862,796	+		GFF2820	0.88	-2.2
2,862,797	-		GFF2820	0.88	+0.6
2,862,797	-		GFF2820	0.88	+0.9
2,862,801	+		GFF2820	0.89	+0.6
2,862,802	-		GFF2820	0.89	+0.1
2,862,804	-		GFF2820	0.89	-2.5
2,862,806	-		GFF2820	0.89	+0.2
2,862,809	-		GFF2820	0.90	-1.6
2,862,819	+				-0.3
2,862,827	-				-0.8
2,862,827	-				-0.2
2,862,856	-				-1.9
2,862,856	-				-0.0
2,862,861	-				+0.9
2,862,925	-				-1.1
2,862,925	-				+0.6
2,862,942	-				-1.2
2,862,947	-				-0.2
2,862,952	-				-1.5
2,862,968	-				-0.6
2,862,968	-				-0.2
2,862,973	+				+0.2
2,862,997	+		GFF2821	0.11	-0.8
2,863,005	-		GFF2821	0.12	+0.2
2,863,044	+		GFF2821	0.16	-1.3
2,863,067	+		GFF2821	0.18	+0.9
2,863,067	+		GFF2821	0.18	-0.8
2,863,067	+		GFF2821	0.18	+0.1
2,863,115	-		GFF2821	0.23	-0.1
2,863,126	-		GFF2821	0.25	+1.6
2,863,126	-		GFF2821	0.25	-1.3
2,863,133	+		GFF2821	0.25	-0.4
2,863,133	+		GFF2821	0.25	-1.0
2,863,161	-		GFF2821	0.28	-1.2
2,863,170	+		GFF2821	0.29	+0.5
2,863,232	+		GFF2821	0.36	+1.3
2,863,242	+		GFF2821	0.37	+0.3
2,863,242	+		GFF2821	0.37	-0.1
2,863,243	+		GFF2821	0.37	+0.5
2,863,243	+		GFF2821	0.37	-1.5
2,863,251	-		GFF2821	0.37	+0.6
2,863,251	-		GFF2821	0.37	+0.9
2,863,277	-		GFF2821	0.40	-0.6
2,863,300	-		GFF2821	0.43	-0.2
2,863,309	-		GFF2821	0.43	-3.6
2,863,309	-		GFF2821	0.43	+0.7
2,863,326	+		GFF2821	0.45	-1.1
2,863,326	+		GFF2821	0.45	+0.6
2,863,334	-		GFF2821	0.46	+0.4
2,863,355	-		GFF2821	0.48	-0.1
2,863,437	-		GFF2821	0.57	+0.5
2,863,442	+		GFF2821	0.57	-1.2
2,863,452	-		GFF2821	0.58	-0.8
2,863,497	+		GFF2821	0.63	+0.2
2,863,502	+		GFF2821	0.63	-0.3
2,863,505	-		GFF2821	0.64	-1.9
2,863,510	-		GFF2821	0.64	-1.2
2,863,510	-		GFF2821	0.64	-1.7
2,863,510	-		GFF2821	0.64	+0.4
2,863,515	-		GFF2821	0.65	-1.6
2,863,517	-		GFF2821	0.65	-1.3
2,863,519	+		GFF2821	0.65	-0.0
2,863,538	-		GFF2821	0.67	+0.5
2,863,538	-		GFF2821	0.67	-0.6
2,863,555	+		GFF2821	0.69	+0.3
2,863,579	+		GFF2821	0.71	-0.4
2,863,584	+		GFF2821	0.72	-0.8
2,863,589	+		GFF2821	0.72	-1.6
2,863,605	+		GFF2821	0.74	-1.1
2,863,613	-		GFF2821	0.75	-0.5
2,863,613	-		GFF2821	0.75	+0.5
2,863,624	+		GFF2821	0.76	+1.7
2,863,640	+		GFF2821	0.78	+0.2
2,863,655	-		GFF2821	0.79	+0.6
2,863,655	-		GFF2821	0.79	-0.3
2,863,655	-		GFF2821	0.79	+0.2
2,863,655	-		GFF2821	0.79	-1.7
2,863,674	-		GFF2821	0.81	-0.6
2,863,685	+		GFF2821	0.82	-0.9
2,863,687	+		GFF2821	0.82	-1.2
2,863,687	+		GFF2821	0.82	-0.1
2,863,692	+		GFF2821	0.83	+0.1
2,863,692	+		GFF2821	0.83	+1.3
2,863,692	+		GFF2821	0.83	+1.0
2,863,692	+		GFF2821	0.83	-1.4
2,863,695	-		GFF2821	0.83	-0.5
2,863,697	+		GFF2821	0.83	-0.4
2,863,697	+		GFF2821	0.83	+1.7
2,863,697	+		GFF2821	0.83	+0.5
2,863,697	+		GFF2821	0.83	-1.0
2,863,697	+		GFF2821	0.83	-1.0
2,863,697	+		GFF2821	0.83	-1.8
2,863,700	-		GFF2821	0.84	-0.8
2,863,705	-		GFF2821	0.84	-1.6
2,863,705	-		GFF2821	0.84	-0.2
2,863,705	-		GFF2821	0.84	-0.6
2,863,705	-		GFF2821	0.84	+0.0
2,863,705	-		GFF2821	0.84	+0.7
2,863,734	+		GFF2821	0.87	+0.6
2,863,756	+		GFF2821	0.90	+0.0
2,863,773	+				-0.7
2,863,778	+				-1.1
2,863,778	+				-1.7
2,863,778	+				-3.2
2,863,778	+				-0.1
2,863,778	+				-1.8
2,863,778	+				-1.3
2,863,781	-				+0.6
2,863,783	+				-0.3
2,863,786	-				-0.5
2,863,786	-				-2.0
2,863,786	-				+0.8
2,863,786	-				+0.2
2,863,788	+				-1.3
2,863,799	+				+0.3
2,863,804	+				+0.5
2,863,804	+				+0.6
2,863,812	-				-0.2
2,863,812	-				-0.3
2,863,812	-				-0.3
2,863,814	+				+0.3
2,863,814	+				-0.3
2,863,822	-				-1.6
2,863,822	-				-0.2
2,863,822	-				+0.7
2,863,835	+				+0.0
2,863,846	-				-1.7
2,863,852	+				-0.8
2,863,860	-				-0.3
2,863,869	+				-1.7
2,863,870	-				+0.1
2,863,875	-				-0.5
2,863,875	-				-1.1
2,863,875	-				+0.6
2,863,877	-				+0.1
2,863,877	-				-1.8
2,863,877	-				-0.1
2,863,877	-				-0.7
2,863,886	+				-1.4
2,863,887	-				+0.2
2,863,891	+				-1.7