Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF278 and GFF279 overlap by 11 nucleotides GFF279 and GFF280 overlap by 4 nucleotides GFF280 and GFF281 are separated by 61 nucleotides GFF281 and GFF282 are separated by 56 nucleotides GFF282 and GFF283 are separated by 263 nucleotides
GFF278 - hypothetical protein, at 273,352 to 273,663
GFF278
GFF279 - hypothetical protein, at 273,653 to 273,994
GFF279
GFF280 - hypothetical protein, at 273,991 to 274,344
GFF280
GFF281 - hypothetical protein, at 274,406 to 274,858
GFF281
GFF282 - hypothetical protein, at 274,915 to 275,271
GFF282
GFF283 - hypothetical protein, at 275,535 to 278,786
GFF283
Position (kb) 274
275 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.407 kb on + strand, within GFF278 at 273.445 kb on - strand, within GFF278 at 273.459 kb on - strand, within GFF278 at 273.460 kb on + strand, within GFF278 at 273.460 kb on + strand, within GFF278 at 273.460 kb on + strand, within GFF278 at 273.466 kb on - strand, within GFF278 at 273.468 kb on - strand, within GFF278 at 273.468 kb on - strand, within GFF278 at 273.468 kb on - strand, within GFF278 at 273.488 kb on + strand, within GFF278 at 273.496 kb on - strand, within GFF278 at 273.497 kb on + strand, within GFF278 at 273.497 kb on + strand, within GFF278 at 273.497 kb on + strand, within GFF278 at 273.505 kb on - strand, within GFF278 at 273.536 kb on - strand, within GFF278 at 273.568 kb on + strand, within GFF278 at 273.575 kb on - strand, within GFF278 at 273.576 kb on - strand, within GFF278 at 273.591 kb on - strand, within GFF278 at 273.608 kb on + strand, within GFF278 at 273.608 kb on - strand, within GFF278 at 273.616 kb on - strand, within GFF278 at 273.634 kb on - strand at 273.641 kb on + strand at 273.642 kb on - strand at 273.649 kb on - strand at 273.651 kb on - strand at 273.659 kb on + strand at 273.659 kb on + strand at 273.659 kb on - strand at 273.708 kb on + strand, within GFF279 at 273.722 kb on + strand, within GFF279 at 273.722 kb on + strand, within GFF279 at 273.728 kb on - strand, within GFF279 at 273.730 kb on - strand, within GFF279 at 273.739 kb on + strand, within GFF279 at 273.739 kb on + strand, within GFF279 at 273.739 kb on + strand, within GFF279 at 273.739 kb on + strand, within GFF279 at 273.744 kb on + strand, within GFF279 at 273.747 kb on - strand, within GFF279 at 273.747 kb on - strand, within GFF279 at 273.747 kb on - strand, within GFF279 at 273.747 kb on - strand, within GFF279 at 273.747 kb on - strand, within GFF279 at 273.747 kb on - strand, within GFF279 at 273.765 kb on - strand, within GFF279 at 273.770 kb on + strand, within GFF279 at 273.771 kb on - strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.813 kb on + strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.821 kb on - strand, within GFF279 at 273.823 kb on - strand, within GFF279 at 273.838 kb on - strand, within GFF279 at 273.846 kb on - strand, within GFF279 at 273.858 kb on - strand, within GFF279 at 273.871 kb on - strand, within GFF279 at 273.871 kb on - strand, within GFF279 at 273.871 kb on - strand, within GFF279 at 273.927 kb on + strand, within GFF279 at 273.927 kb on + strand, within GFF279 at 273.927 kb on + strand, within GFF279 at 273.935 kb on - strand, within GFF279 at 273.937 kb on + strand, within GFF279 at 273.943 kb on + strand, within GFF279 at 273.966 kb on - strand at 273.983 kb on - strand at 273.985 kb on + strand at 273.990 kb on + strand at 273.995 kb on + strand at 274.003 kb on - strand at 274.003 kb on - strand at 274.003 kb on - strand at 274.003 kb on - strand at 274.004 kb on + strand at 274.009 kb on + strand at 274.017 kb on + strand at 274.019 kb on + strand at 274.025 kb on - strand at 274.025 kb on - strand at 274.027 kb on - strand, within GFF280 at 274.029 kb on + strand, within GFF280 at 274.029 kb on + strand, within GFF280 at 274.037 kb on - strand, within GFF280 at 274.037 kb on - strand, within GFF280 at 274.037 kb on - strand, within GFF280 at 274.061 kb on + strand, within GFF280 at 274.061 kb on + strand, within GFF280 at 274.069 kb on - strand, within GFF280 at 274.105 kb on + strand, within GFF280 at 274.105 kb on + strand, within GFF280 at 274.126 kb on - strand, within GFF280 at 274.128 kb on + strand, within GFF280 at 274.291 kb on + strand, within GFF280 at 274.317 kb on - strand at 274.347 kb on - strand at 274.531 kb on + strand, within GFF281 at 274.531 kb on + strand, within GFF281 at 274.531 kb on + strand, within GFF281 at 274.531 kb on + strand, within GFF281 at 274.537 kb on - strand, within GFF281 at 274.539 kb on - strand, within GFF281 at 274.539 kb on - strand, within GFF281 at 274.579 kb on + strand, within GFF281 at 274.596 kb on - strand, within GFF281 at 274.626 kb on + strand, within GFF281 at 274.636 kb on + strand, within GFF281 at 274.639 kb on - strand, within GFF281 at 274.639 kb on - strand, within GFF281 at 274.647 kb on + strand, within GFF281 at 274.647 kb on + strand, within GFF281 at 274.655 kb on - strand, within GFF281 at 274.691 kb on - strand, within GFF281 at 274.717 kb on + strand, within GFF281 at 274.720 kb on - strand, within GFF281 at 274.720 kb on - strand, within GFF281 at 274.746 kb on + strand, within GFF281 at 274.746 kb on + strand, within GFF281 at 274.746 kb on + strand, within GFF281 at 274.746 kb on + strand, within GFF281 at 274.746 kb on + strand, within GFF281 at 274.754 kb on - strand, within GFF281 at 274.754 kb on - strand, within GFF281 at 274.754 kb on - strand, within GFF281 at 274.754 kb on - strand, within GFF281 at 274.754 kb on - strand, within GFF281 at 274.754 kb on - strand, within GFF281 at 274.756 kb on - strand, within GFF281 at 274.769 kb on + strand, within GFF281 at 274.769 kb on - strand, within GFF281 at 274.775 kb on - strand, within GFF281 at 274.777 kb on - strand, within GFF281 at 274.778 kb on + strand, within GFF281 at 274.778 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.788 kb on + strand, within GFF281 at 274.792 kb on - strand, within GFF281 at 274.794 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.796 kb on - strand, within GFF281 at 274.798 kb on + strand, within GFF281 at 274.801 kb on - strand, within GFF281 at 274.802 kb on - strand, within GFF281 at 274.806 kb on - strand, within GFF281 at 274.806 kb on - strand, within GFF281 at 274.830 kb on - strand at 274.867 kb on - strand at 274.882 kb on - strand at 274.993 kb on + strand, within GFF282 at 274.993 kb on + strand, within GFF282 at 275.050 kb on + strand, within GFF282 at 275.050 kb on + strand, within GFF282 at 275.058 kb on - strand, within GFF282 at 275.058 kb on - strand, within GFF282 at 275.058 kb on - strand, within GFF282 at 275.104 kb on + strand, within GFF282 at 275.104 kb on + strand, within GFF282 at 275.112 kb on - strand, within GFF282 at 275.170 kb on - strand, within GFF282 at 275.244 kb on - strand at 275.343 kb on - strand at 275.362 kb on + strand at 275.370 kb on - strand at 275.417 kb on + strand at 275.419 kb on + strand at 275.422 kb on + strand at 275.461 kb on - strand at 275.461 kb on - strand at 275.469 kb on - strand at 275.610 kb on + strand at 275.610 kb on + strand at 275.610 kb on + strand at 275.665 kb on + strand at 275.665 kb on + strand at 275.665 kb on + strand at 275.670 kb on + strand at 275.673 kb on - strand at 275.687 kb on - strand at 275.690 kb on + strand at 275.694 kb on + strand at 275.698 kb on - strand at 275.710 kb on + strand at 275.724 kb on + strand at 275.724 kb on + strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.748 kb on + strand at 275.781 kb on - strand at 275.781 kb on - strand at 275.781 kb on - strand at 275.788 kb on + strand at 275.802 kb on + strand at 275.804 kb on + strand at 275.810 kb on - strand at 275.810 kb on - strand at 275.812 kb on - strand at 275.812 kb on - strand at 275.824 kb on + strand at 275.824 kb on + strand at 275.824 kb on + strand at 275.824 kb on + strand at 275.824 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.829 kb on + strand at 275.832 kb on - strand at 275.832 kb on - strand at 275.837 kb on - strand at 275.837 kb on - strand at 275.837 kb on - strand at 275.837 kb on - strand at 275.837 kb on - strand at 275.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 273,407 + GFF278 0.18 +0.2 273,445 - GFF278 0.30 +1.7 273,459 - GFF278 0.34 -0.9 273,460 + GFF278 0.35 +2.0 273,460 + GFF278 0.35 +0.4 273,460 + GFF278 0.35 -0.1 273,466 - GFF278 0.37 -0.5 273,468 - GFF278 0.37 +0.2 273,468 - GFF278 0.37 +1.3 273,468 - GFF278 0.37 -0.6 273,488 + GFF278 0.44 -0.7 273,496 - GFF278 0.46 +0.2 273,497 + GFF278 0.46 +0.2 273,497 + GFF278 0.46 -2.0 273,497 + GFF278 0.46 +1.2 273,505 - GFF278 0.49 -1.5 273,536 - GFF278 0.59 +0.4 273,568 + GFF278 0.69 -0.2 273,575 - GFF278 0.71 +0.0 273,576 - GFF278 0.72 +0.5 273,591 - GFF278 0.77 -0.8 273,608 + GFF278 0.82 +0.6 273,608 - GFF278 0.82 -1.7 273,616 - GFF278 0.85 +0.1 273,634 - -0.4 273,641 + -1.8 273,642 - -0.2 273,649 - +0.4 273,651 - -0.7 273,659 + -0.2 273,659 + -2.0 273,659 - +0.4 273,708 + GFF279 0.16 +0.6 273,722 + GFF279 0.20 +0.5 273,722 + GFF279 0.20 -1.4 273,728 - GFF279 0.22 +0.8 273,730 - GFF279 0.23 -0.1 273,739 + GFF279 0.25 +0.7 273,739 + GFF279 0.25 +0.9 273,739 + GFF279 0.25 -0.2 273,739 + GFF279 0.25 -0.4 273,744 + GFF279 0.27 +0.2 273,747 - GFF279 0.27 +1.0 273,747 - GFF279 0.27 -0.7 273,747 - GFF279 0.27 -0.8 273,747 - GFF279 0.27 -1.0 273,747 - GFF279 0.27 +0.2 273,747 - GFF279 0.27 -0.8 273,765 - GFF279 0.33 -1.2 273,770 + GFF279 0.34 +1.0 273,771 - GFF279 0.35 -1.3 273,813 + GFF279 0.47 +1.2 273,813 + GFF279 0.47 +1.3 273,813 + GFF279 0.47 -0.5 273,813 + GFF279 0.47 +0.5 273,813 + GFF279 0.47 -1.1 273,813 + GFF279 0.47 +0.3 273,813 + GFF279 0.47 -0.9 273,813 + GFF279 0.47 +1.5 273,813 + GFF279 0.47 -0.6 273,813 + GFF279 0.47 +0.8 273,813 + GFF279 0.47 +1.7 273,813 + GFF279 0.47 -1.5 273,813 + GFF279 0.47 +0.2 273,813 + GFF279 0.47 -0.7 273,813 + GFF279 0.47 +0.9 273,821 - GFF279 0.49 +0.3 273,821 - GFF279 0.49 -0.0 273,821 - GFF279 0.49 -0.1 273,821 - GFF279 0.49 +0.1 273,821 - GFF279 0.49 +0.4 273,821 - GFF279 0.49 -0.2 273,821 - GFF279 0.49 +0.6 273,821 - GFF279 0.49 -0.0 273,823 - GFF279 0.50 +0.4 273,838 - GFF279 0.54 +0.4 273,846 - GFF279 0.56 +0.0 273,858 - GFF279 0.60 +1.7 273,871 - GFF279 0.64 +1.0 273,871 - GFF279 0.64 -0.4 273,871 - GFF279 0.64 +1.5 273,927 + GFF279 0.80 -2.0 273,927 + GFF279 0.80 -0.2 273,927 + GFF279 0.80 -0.5 273,935 - GFF279 0.82 -0.6 273,937 + GFF279 0.83 +0.2 273,943 + GFF279 0.85 +1.5 273,966 - +1.1 273,983 - +0.6 273,985 + -1.5 273,990 + +1.0 273,995 + -0.9 274,003 - +0.4 274,003 - +0.0 274,003 - +0.4 274,003 - -1.3 274,004 + +1.8 274,009 + +1.1 274,017 + +0.8 274,019 + -0.2 274,025 - +0.0 274,025 - +1.3 274,027 - GFF280 0.10 +0.2 274,029 + GFF280 0.11 -0.8 274,029 + GFF280 0.11 +0.7 274,037 - GFF280 0.13 +0.5 274,037 - GFF280 0.13 +1.1 274,037 - GFF280 0.13 +0.8 274,061 + GFF280 0.20 +1.2 274,061 + GFF280 0.20 +0.6 274,069 - GFF280 0.22 -0.4 274,105 + GFF280 0.32 +0.0 274,105 + GFF280 0.32 -1.0 274,126 - GFF280 0.38 +0.6 274,128 + GFF280 0.39 +1.0 274,291 + GFF280 0.85 -0.6 274,317 - -1.3 274,347 - -2.0 274,531 + GFF281 0.28 +0.6 274,531 + GFF281 0.28 -0.8 274,531 + GFF281 0.28 -0.4 274,531 + GFF281 0.28 -0.6 274,537 - GFF281 0.29 +0.1 274,539 - GFF281 0.29 -0.5 274,539 - GFF281 0.29 -0.0 274,579 + GFF281 0.38 -0.6 274,596 - GFF281 0.42 +0.0 274,626 + GFF281 0.49 -1.0 274,636 + GFF281 0.51 +0.5 274,639 - GFF281 0.51 -0.0 274,639 - GFF281 0.51 +0.1 274,647 + GFF281 0.53 +1.7 274,647 + GFF281 0.53 +0.6 274,655 - GFF281 0.55 +2.7 274,691 - GFF281 0.63 -1.2 274,717 + GFF281 0.69 +0.9 274,720 - GFF281 0.69 -2.4 274,720 - GFF281 0.69 -0.9 274,746 + GFF281 0.75 -2.2 274,746 + GFF281 0.75 +0.3 274,746 + GFF281 0.75 -0.1 274,746 + GFF281 0.75 -1.0 274,746 + GFF281 0.75 +0.8 274,754 - GFF281 0.77 -0.6 274,754 - GFF281 0.77 +0.1 274,754 - GFF281 0.77 +0.5 274,754 - GFF281 0.77 +0.5 274,754 - GFF281 0.77 +0.7 274,754 - GFF281 0.77 +0.8 274,756 - GFF281 0.77 -0.2 274,769 + GFF281 0.80 -0.0 274,769 - GFF281 0.80 +0.0 274,775 - GFF281 0.81 +0.5 274,777 - GFF281 0.82 +1.1 274,778 + GFF281 0.82 +0.7 274,778 + GFF281 0.82 +0.3 274,788 + GFF281 0.84 -0.2 274,788 + GFF281 0.84 +1.2 274,788 + GFF281 0.84 +1.0 274,788 + GFF281 0.84 -0.3 274,788 + GFF281 0.84 +1.1 274,788 + GFF281 0.84 +0.1 274,788 + GFF281 0.84 -1.1 274,788 + GFF281 0.84 -0.8 274,788 + GFF281 0.84 -0.5 274,788 + GFF281 0.84 -1.3 274,788 + GFF281 0.84 +1.4 274,788 + GFF281 0.84 +0.2 274,788 + GFF281 0.84 +0.3 274,788 + GFF281 0.84 -0.2 274,788 + GFF281 0.84 -0.4 274,788 + GFF281 0.84 -0.1 274,792 - GFF281 0.85 -0.6 274,794 - GFF281 0.86 -0.2 274,796 - GFF281 0.86 +1.7 274,796 - GFF281 0.86 -0.6 274,796 - GFF281 0.86 +0.8 274,796 - GFF281 0.86 +0.8 274,796 - GFF281 0.86 -0.3 274,796 - GFF281 0.86 -1.5 274,796 - GFF281 0.86 +1.8 274,796 - GFF281 0.86 -0.5 274,796 - GFF281 0.86 -0.2 274,796 - GFF281 0.86 +0.1 274,798 + GFF281 0.87 +0.7 274,801 - GFF281 0.87 +0.1 274,802 - GFF281 0.87 +0.5 274,806 - GFF281 0.88 +0.4 274,806 - GFF281 0.88 -1.1 274,830 - +0.0 274,867 - -1.4 274,882 - -0.4 274,993 + GFF282 0.22 -0.6 274,993 + GFF282 0.22 +0.0 275,050 + GFF282 0.38 -2.1 275,050 + GFF282 0.38 +0.8 275,058 - GFF282 0.40 +0.4 275,058 - GFF282 0.40 -1.6 275,058 - GFF282 0.40 +0.2 275,104 + GFF282 0.53 -0.5 275,104 + GFF282 0.53 -0.2 275,112 - GFF282 0.55 +0.1 275,170 - GFF282 0.71 +0.2 275,244 - +1.1 275,343 - -0.1 275,362 + -0.2 275,370 - +1.6 275,417 + -0.6 275,419 + +1.0 275,422 + +2.0 275,461 - +0.0 275,461 - -1.0 275,469 - -0.8 275,610 + -1.1 275,610 + -1.0 275,610 + -0.8 275,665 + +0.2 275,665 + -1.1 275,665 + +0.0 275,670 + -0.8 275,673 - -0.2 275,687 - +1.0 275,690 + -1.0 275,694 + -2.1 275,698 - +1.0 275,710 + +1.0 275,724 + -0.2 275,724 + -0.8 275,732 - -0.5 275,732 - -1.2 275,732 - -0.2 275,748 + +0.2 275,781 - +0.5 275,781 - +0.0 275,781 - +1.4 275,788 + +1.0 275,802 + -0.1 275,804 + -1.8 275,810 - -0.8 275,810 - -1.0 275,812 - +0.7 275,812 - +0.8 275,824 + -0.1 275,824 + -0.6 275,824 + +1.0 275,824 + -0.3 275,824 + +1.0 275,829 + +0.2 275,829 + -0.6 275,829 + -0.4 275,829 + +2.4 275,829 + +1.4 275,829 + +0.6 275,829 + +1.3 275,829 + +2.0 275,832 - -0.8 275,832 - +1.0 275,837 - +0.9 275,837 - -0.0 275,837 - -0.3 275,837 - -0.6 275,837 - -0.8 275,842 - +0.2
Or see this region's nucleotide sequence