Strain Fitness in Sphingobium sp. HT1-2 around GFF2650

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,668,317	-		GFF2649	0.23	-1.4
2,668,322	-		GFF2649	0.24	-0.3
2,668,333	+		GFF2649	0.25	-0.4
2,668,343	+		GFF2649	0.26	+0.8
2,668,343	+		GFF2649	0.26	-0.0
2,668,343	+		GFF2649	0.26	+1.9
2,668,343	+		GFF2649	0.26	-1.1
2,668,346	-		GFF2649	0.26	+0.2
2,668,346	-		GFF2649	0.26	-0.3
2,668,346	-		GFF2649	0.26	+0.5
2,668,351	-		GFF2649	0.26	+0.7
2,668,367	-		GFF2649	0.28	-0.3
2,668,368	+		GFF2649	0.28	+1.5
2,668,368	+		GFF2649	0.28	-1.9
2,668,376	-		GFF2649	0.28	+0.6
2,668,376	-		GFF2649	0.28	-1.3
2,668,396	+		GFF2649	0.30	-0.0
2,668,397	-		GFF2649	0.30	+0.2
2,668,404	+		GFF2649	0.31	+0.2
2,668,429	+		GFF2649	0.33	+0.0
2,668,439	+		GFF2649	0.34	-0.5
2,668,447	-		GFF2649	0.34	+0.2
2,668,449	+		GFF2649	0.35	-2.6
2,668,457	-		GFF2649	0.35	+0.4
2,668,494	+		GFF2649	0.38	-1.4
2,668,504	-		GFF2649	0.39	+0.4
2,668,511	+		GFF2649	0.40	+0.5
2,668,511	+		GFF2649	0.40	-0.2
2,668,558	-		GFF2649	0.44	-0.8
2,668,574	-		GFF2649	0.45	+1.0
2,668,621	-		GFF2649	0.49	-0.1
2,668,639	+		GFF2649	0.51	-0.7
2,668,639	+		GFF2649	0.51	-0.0
2,668,639	+		GFF2649	0.51	+1.2
2,668,644	+		GFF2649	0.51	+0.2
2,668,647	-		GFF2649	0.51	-0.0
2,668,647	-		GFF2649	0.51	+0.1
2,668,647	-		GFF2649	0.51	-1.4
2,668,647	-		GFF2649	0.51	-1.4
2,668,647	-		GFF2649	0.51	-0.6
2,668,652	-		GFF2649	0.52	-1.6
2,668,652	-		GFF2649	0.52	+0.8
2,668,656	-		GFF2649	0.52	-0.2
2,668,658	+		GFF2649	0.52	+0.2
2,668,669	-		GFF2649	0.53	-0.2
2,668,691	+		GFF2649	0.55	-2.0
2,668,699	-		GFF2649	0.56	-0.5
2,668,712	-		GFF2649	0.57	-1.3
2,668,714	+		GFF2649	0.57	-0.1
2,668,737	+		GFF2649	0.59	-0.4
2,668,738	+		GFF2649	0.59	-1.1
2,668,761	+		GFF2649	0.61	+0.5
2,668,762	+		GFF2649	0.61	-0.7
2,668,770	-		GFF2649	0.62	-2.2
2,668,770	-		GFF2649	0.62	+0.8
2,668,785	+		GFF2649	0.63	-0.9
2,668,812	-		GFF2649	0.65	+1.4
2,668,814	-		GFF2649	0.66	+0.1
2,668,818	+		GFF2649	0.66	-0.3
2,668,821	-		GFF2649	0.66	-0.3
2,668,826	-		GFF2649	0.67	-1.7
2,668,826	-		GFF2649	0.67	-0.1
2,668,841	+		GFF2649	0.68	-0.3
2,668,865	+		GFF2649	0.70	+0.2
2,668,866	+		GFF2649	0.70	-0.2
2,668,866	+		GFF2649	0.70	+0.1
2,668,866	+		GFF2649	0.70	-0.1
2,668,866	+		GFF2649	0.70	+2.4
2,668,866	+		GFF2649	0.70	-2.0
2,668,866	+		GFF2649	0.70	-2.1
2,668,866	+		GFF2649	0.70	-0.3
2,668,874	-		GFF2649	0.71	+0.2
2,668,874	-		GFF2649	0.71	+0.1
2,668,874	-		GFF2649	0.71	+1.5
2,668,874	-		GFF2649	0.71	-2.0
2,668,874	-		GFF2649	0.71	-1.7
2,668,874	-		GFF2649	0.71	-0.1
2,668,874	-		GFF2649	0.71	-0.0
2,668,874	-		GFF2649	0.71	-1.9
2,668,900	+		GFF2649	0.73	-0.8
2,668,931	+		GFF2649	0.75	+0.1
2,668,939	-		GFF2649	0.76	-1.5
2,668,952	-		GFF2649	0.77	-1.1
2,668,952	-		GFF2649	0.77	-3.0
2,668,981	+		GFF2649	0.80	+0.1
2,668,989	-		GFF2649	0.80	+0.0
2,669,018	-		GFF2649	0.83	+0.4
2,669,033	+		GFF2649	0.84	-2.1
2,669,041	-		GFF2649	0.85	-0.1
2,669,041	-		GFF2649	0.85	-0.3
2,669,064	+		GFF2649	0.87	-1.2
2,669,064	+		GFF2649	0.87	-1.6
2,669,064	+		GFF2649	0.87	-2.1
2,669,064	+		GFF2649	0.87	-1.8
2,669,072	-		GFF2649	0.87	-0.2
2,669,072	-		GFF2649	0.87	+0.4
2,669,078	+		GFF2649	0.88	-1.0
2,669,078	+		GFF2649	0.88	-2.1
2,669,105	+				+0.4
2,669,135	-				-0.8
2,669,158	+				+0.3
2,669,166	-				-0.4
2,669,167	+				-0.3
2,669,169	-				-0.3
2,669,174	-				-0.3
2,669,175	-				+0.1
2,669,195	-				+0.2
2,669,209	+				-0.5
2,669,217	-				-0.5
2,669,228	-				+0.5
2,669,229	-				-0.2
2,669,229	-				-0.7
2,669,229	-				-1.0
2,669,253	+				-1.0
2,669,305	-				+0.0
2,669,354	-				-1.2
2,669,356	+				-0.0
2,669,356	+				-0.5
2,669,361	+		GFF2650	0.10	-0.8
2,669,369	-		GFF2650	0.12	+0.7
2,669,369	-		GFF2650	0.12	+0.5
2,669,369	-		GFF2650	0.12	-0.8
2,669,369	-		GFF2650	0.12	-1.2
2,669,374	-		GFF2650	0.13	-1.0
2,669,394	-		GFF2650	0.17	-2.0
2,669,394	-		GFF2650	0.17	-0.7
2,669,396	+		GFF2650	0.18	-0.5
2,669,396	+		GFF2650	0.18	-0.6
2,669,396	+		GFF2650	0.18	-1.3
2,669,403	-		GFF2650	0.20	+0.6
2,669,404	-		GFF2650	0.20	+0.0
2,669,404	-		GFF2650	0.20	-1.4
2,669,404	-		GFF2650	0.20	+1.0
2,669,406	+		GFF2650	0.20	+0.5
2,669,406	+		GFF2650	0.20	-1.0
2,669,406	+		GFF2650	0.20	+0.3
2,669,406	+		GFF2650	0.20	+0.0
2,669,406	+		GFF2650	0.20	-0.5
2,669,409	-		GFF2650	0.21	-1.8
2,669,409	-		GFF2650	0.21	+0.9
2,669,409	-		GFF2650	0.21	+0.5
2,669,409	-		GFF2650	0.21	-0.5
2,669,413	+		GFF2650	0.22	+0.2
2,669,414	-		GFF2650	0.22	+0.3
2,669,414	-		GFF2650	0.22	-1.5
2,669,414	-		GFF2650	0.22	-0.4
2,669,417	+		GFF2650	0.23	-1.8
2,669,447	+		GFF2650	0.29	-0.1
2,669,447	+		GFF2650	0.29	+0.3
2,669,447	+		GFF2650	0.29	-0.2
2,669,447	+		GFF2650	0.29	+1.8
2,669,447	+		GFF2650	0.29	-0.2
2,669,447	+		GFF2650	0.29	+0.7
2,669,447	+		GFF2650	0.29	-1.9
2,669,447	+		GFF2650	0.29	-0.6
2,669,450	-		GFF2650	0.30	+0.1
2,669,455	-		GFF2650	0.31	+0.8
2,669,455	-		GFF2650	0.31	-0.0
2,669,455	-		GFF2650	0.31	+0.4
2,669,455	-		GFF2650	0.31	-0.0
2,669,455	-		GFF2650	0.31	-0.0
2,669,455	-		GFF2650	0.31	+0.3
2,669,455	-		GFF2650	0.31	-0.1
2,669,455	-		GFF2650	0.31	-0.4
2,669,464	+		GFF2650	0.33	-0.8
2,669,465	+		GFF2650	0.34	+0.3
2,669,465	+		GFF2650	0.34	+0.7
2,669,465	+		GFF2650	0.34	-1.4
2,669,471	-		GFF2650	0.35	-0.6
2,669,471	-		GFF2650	0.35	-0.4
2,669,478	-		GFF2650	0.37	-1.9
2,669,501	+		GFF2650	0.42	+0.8
2,669,509	-		GFF2650	0.44	+0.9
2,669,515	+		GFF2650	0.45	-1.3
2,669,555	+		GFF2650	0.54	-1.3
2,669,578	+		GFF2650	0.59	+0.3
2,669,578	+		GFF2650	0.59	+0.0
2,669,578	+		GFF2650	0.59	-0.5
2,669,578	+		GFF2650	0.59	+1.0
2,669,578	+		GFF2650	0.59	-0.4
2,669,578	+		GFF2650	0.59	+0.9
2,669,578	+		GFF2650	0.59	-0.3
2,669,578	+		GFF2650	0.59	+0.8
2,669,581	-		GFF2650	0.60	+0.4
2,669,586	-		GFF2650	0.61	-0.3
2,669,586	-		GFF2650	0.61	+0.1
2,669,586	-		GFF2650	0.61	-1.4
2,669,586	-		GFF2650	0.61	+0.1
2,669,586	-		GFF2650	0.61	-0.7
2,669,597	+		GFF2650	0.63	-0.9
2,669,597	+		GFF2650	0.63	-0.0
2,669,597	+		GFF2650	0.63	-0.6
2,669,602	+		GFF2650	0.65	-0.3
2,669,605	-		GFF2650	0.65	-0.2
2,669,605	-		GFF2650	0.65	-2.3
2,669,605	-		GFF2650	0.65	-0.1
2,669,605	-		GFF2650	0.65	-1.2
2,669,605	-		GFF2650	0.65	-0.2
2,669,610	-		GFF2650	0.66	+0.5
2,669,640	+		GFF2650	0.73	+0.5
2,669,684	+		GFF2650	0.83	-0.4
2,669,689	+		GFF2650	0.84	+1.2
2,669,704	-		GFF2650	0.88	-1.8
2,669,705	-		GFF2650	0.88	-1.0
2,669,720	-				-3.1
2,669,721	+				+0.1
2,669,721	+				-0.3
2,669,734	-				-0.2
2,669,746	+				-1.3
2,669,752	+				-0.2
2,669,755	-				-1.0
2,669,772	-				+0.3
2,669,777	+				-0.9
2,669,788	+				-0.0
2,669,805	+				-0.4
2,669,805	+				-1.7
2,669,813	-				+0.7
2,669,815	-				-0.1
2,669,863	-				-0.9
2,669,880	+				-3.1
2,669,888	-				-0.0
2,669,888	-				-0.3
2,669,931	-				-1.0
2,669,951	+				-1.8
2,669,965	+		GFF2651	0.11	+0.6
2,669,974	+		GFF2651	0.11	+0.3
2,669,988	+		GFF2651	0.12	+0.3
2,669,988	-		GFF2651	0.12	-1.5
2,669,996	-		GFF2651	0.13	+0.9
2,670,025	+		GFF2651	0.15	+0.4
2,670,038	+		GFF2651	0.16	+1.1
2,670,042	+		GFF2651	0.17	-1.6
2,670,047	+		GFF2651	0.17	-0.4
2,670,047	+		GFF2651	0.17	-0.0
2,670,047	+		GFF2651	0.17	+2.3
2,670,055	-		GFF2651	0.18	+1.0
2,670,055	-		GFF2651	0.18	-1.4
2,670,055	-		GFF2651	0.18	-0.6
2,670,055	-		GFF2651	0.18	+0.6
2,670,055	-		GFF2651	0.18	+0.7
2,670,090	+		GFF2651	0.20	-0.6
2,670,103	+		GFF2651	0.21	+1.2
2,670,114	+		GFF2651	0.22	-0.4
2,670,114	+		GFF2651	0.22	+0.7
2,670,114	+		GFF2651	0.22	-1.9
2,670,128	+		GFF2651	0.23	+0.0
2,670,131	-		GFF2651	0.23	+0.4
2,670,137	+		GFF2651	0.24	-1.4
2,670,141	-		GFF2651	0.24	-1.2
2,670,145	-		GFF2651	0.25	-0.3
2,670,178	-		GFF2651	0.27	+0.1
2,670,178	-		GFF2651	0.27	-0.5
2,670,182	-		GFF2651	0.27	+0.1
2,670,231	+		GFF2651	0.31	+2.2
2,670,231	+		GFF2651	0.31	-0.5
2,670,231	+		GFF2651	0.31	-0.9
2,670,234	-		GFF2651	0.32	-0.0
2,670,236	+		GFF2651	0.32	-1.3
2,670,239	-		GFF2651	0.32	-0.2
2,670,239	-		GFF2651	0.32	-0.7
2,670,244	-		GFF2651	0.32	+1.2
2,670,244	-		GFF2651	0.32	-0.3
2,670,244	-		GFF2651	0.32	-0.1
2,670,249	-		GFF2651	0.33	-0.5
2,670,256	+		GFF2651	0.33	-1.1
2,670,277	+		GFF2651	0.35	+0.1
2,670,285	-		GFF2651	0.36	-2.6
2,670,287	+		GFF2651	0.36	+1.1
2,670,287	+		GFF2651	0.36	-0.5
2,670,287	+		GFF2651	0.36	-1.0
2,670,287	+		GFF2651	0.36	-0.0
2,670,295	-		GFF2651	0.36	+1.4
2,670,295	-		GFF2651	0.36	+0.1
2,670,295	-		GFF2651	0.36	-0.9
2,670,339	-		GFF2651	0.40	-2.5
2,670,350	-		GFF2651	0.41	-1.3
2,670,393	+		GFF2651	0.44	+0.1
2,670,393	+		GFF2651	0.44	-2.7
2,670,422	+		GFF2651	0.46	-1.6
2,670,422	+		GFF2651	0.46	-0.2
2,670,422	+		GFF2651	0.46	-2.3
2,670,422	+		GFF2651	0.46	+1.0
2,670,422	+		GFF2651	0.46	-0.3
2,670,422	+		GFF2651	0.46	-0.4
2,670,422	+		GFF2651	0.46	-0.3
2,670,427	+		GFF2651	0.47	-1.1
2,670,427	+		GFF2651	0.47	+1.6
2,670,430	-		GFF2651	0.47	+0.1
2,670,430	-		GFF2651	0.47	-1.4
2,670,430	-		GFF2651	0.47	-2.0
2,670,430	-		GFF2651	0.47	+0.2
2,670,430	-		GFF2651	0.47	-0.7
2,670,430	-		GFF2651	0.47	-0.7
2,670,430	-		GFF2651	0.47	+0.2
2,670,430	-		GFF2651	0.47	-0.1
2,670,430	-		GFF2651	0.47	-0.8
2,670,430	-		GFF2651	0.47	-0.9
2,670,444	+		GFF2651	0.48	-0.4
2,670,451	+		GFF2651	0.48	+0.4
2,670,452	-		GFF2651	0.49	-1.6
2,670,452	-		GFF2651	0.49	+1.3
2,670,459	-		GFF2651	0.49	-1.3
2,670,479	+		GFF2651	0.51	-1.0
2,670,479	+		GFF2651	0.51	-0.6
2,670,479	+		GFF2651	0.51	-0.9
2,670,479	+		GFF2651	0.51	+0.9
2,670,479	+		GFF2651	0.51	-0.1
2,670,479	+		GFF2651	0.51	-1.2
2,670,479	+		GFF2651	0.51	+0.0
2,670,484	+		GFF2651	0.51	-2.2
2,670,487	-		GFF2651	0.51	+0.6
2,670,487	-		GFF2651	0.51	-1.0
2,670,487	-		GFF2651	0.51	-0.8
2,670,487	-		GFF2651	0.51	+0.0
2,670,487	-		GFF2651	0.51	-1.4
2,670,497	-		GFF2651	0.52	-0.6
2,670,497	-		GFF2651	0.52	+0.0
2,670,497	-		GFF2651	0.52	-0.8
2,670,497	-		GFF2651	0.52	-0.0
2,670,498	+		GFF2651	0.52	-0.3
2,670,498	-		GFF2651	0.52	-0.0
2,670,585	-		GFF2651	0.59	-1.4
2,670,588	+		GFF2651	0.59	-0.7
2,670,595	-		GFF2651	0.60	+1.0
2,670,606	-		GFF2651	0.61	+0.2
2,670,612	+		GFF2651	0.61	+0.6
2,670,612	+		GFF2651	0.61	+0.1
2,670,620	-		GFF2651	0.62	-1.0
2,670,631	-		GFF2651	0.63	-0.4
2,670,631	-		GFF2651	0.63	-0.2
2,670,644	+		GFF2651	0.64	-0.3
2,670,652	-		GFF2651	0.64	-0.9
2,670,660	-		GFF2651	0.65	-0.3
2,670,662	-		GFF2651	0.65	+0.0
2,670,662	-		GFF2651	0.65	+1.0
2,670,713	+		GFF2651	0.69	+0.2
2,670,713	+		GFF2651	0.69	+0.3
2,670,713	+		GFF2651	0.69	-0.1
2,670,713	+		GFF2651	0.69	-0.1
2,670,713	+		GFF2651	0.69	+1.0
2,670,713	+		GFF2651	0.69	-0.2
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2,670,723	+		GFF2651	0.70	-1.3
2,670,725	+		GFF2651	0.70	+1.3