Strain Fitness in Sphingobium sp. HT1-2 around GFF2584

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,598,133	-				+1.2
2,598,133	-				-2.1
2,598,160	+				+0.8
2,598,189	+		GFF2583	0.13	-2.7
2,598,201	+		GFF2583	0.14	+0.1
2,598,242	+		GFF2583	0.18	-2.0
2,598,250	-		GFF2583	0.18	+1.2
2,598,250	-		GFF2583	0.18	+0.6
2,598,284	+		GFF2583	0.22	-0.9
2,598,291	-		GFF2583	0.22	+1.4
2,598,312	+		GFF2583	0.24	+1.3
2,598,336	-		GFF2583	0.27	+0.0
2,598,349	-		GFF2583	0.28	-0.2
2,598,378	+		GFF2583	0.31	+1.4
2,598,386	-		GFF2583	0.31	+0.2
2,598,386	-		GFF2583	0.31	+1.1
2,598,399	+		GFF2583	0.33	-0.3
2,598,404	+		GFF2583	0.33	-0.4
2,598,404	+		GFF2583	0.33	+0.7
2,598,404	+		GFF2583	0.33	+0.2
2,598,406	+		GFF2583	0.33	+0.7
2,598,406	-		GFF2583	0.33	-1.2
2,598,412	-		GFF2583	0.34	+0.7
2,598,414	-		GFF2583	0.34	-1.3
2,598,414	-		GFF2583	0.34	+1.0
2,598,455	+		GFF2583	0.38	+0.3
2,598,486	+		GFF2583	0.41	+0.8
2,598,494	-		GFF2583	0.42	+0.4
2,598,501	-		GFF2583	0.42	+0.6
2,598,501	-		GFF2583	0.42	+0.2
2,598,522	-		GFF2583	0.44	-1.2
2,598,522	-		GFF2583	0.44	-0.1
2,598,543	+		GFF2583	0.46	+0.2
2,598,543	+		GFF2583	0.46	-1.4
2,598,554	+		GFF2583	0.48	+0.1
2,598,554	+		GFF2583	0.48	-0.8
2,598,554	+		GFF2583	0.48	+0.6
2,598,554	+		GFF2583	0.48	+0.2
2,598,554	+		GFF2583	0.48	-0.7
2,598,554	+		GFF2583	0.48	+0.9
2,598,554	+		GFF2583	0.48	+0.4
2,598,554	+		GFF2583	0.48	+0.5
2,598,554	+		GFF2583	0.48	+0.7
2,598,554	+		GFF2583	0.48	-0.5
2,598,554	+		GFF2583	0.48	+0.2
2,598,554	+		GFF2583	0.48	+0.0
2,598,554	+		GFF2583	0.48	+0.2
2,598,554	+		GFF2583	0.48	-0.7
2,598,554	+		GFF2583	0.48	+0.3
2,598,562	-		GFF2583	0.48	+0.6
2,598,562	-		GFF2583	0.48	-0.4
2,598,562	-		GFF2583	0.48	-0.4
2,598,562	-		GFF2583	0.48	-0.2
2,598,562	-		GFF2583	0.48	-0.3
2,598,562	-		GFF2583	0.48	-1.7
2,598,562	-		GFF2583	0.48	-0.7
2,598,562	-		GFF2583	0.48	-0.9
2,598,562	-		GFF2583	0.48	-0.7
2,598,562	-		GFF2583	0.48	-1.7
2,598,562	-		GFF2583	0.48	-0.5
2,598,579	+		GFF2583	0.50	+0.9
2,598,580	-		GFF2583	0.50	-0.1
2,598,580	-		GFF2583	0.50	-0.5
2,598,580	-		GFF2583	0.50	-0.4
2,598,602	-		GFF2583	0.52	+0.1
2,598,629	-		GFF2583	0.55	+0.9
2,598,644	+		GFF2583	0.56	-0.9
2,598,646	-		GFF2583	0.56	-0.8
2,598,651	+		GFF2583	0.57	-0.3
2,598,673	+		GFF2583	0.59	-1.4
2,598,677	+		GFF2583	0.59	-0.2
2,598,677	+		GFF2583	0.59	+1.1
2,598,685	-		GFF2583	0.60	+1.0
2,598,741	+		GFF2583	0.65	-0.1
2,598,746	+		GFF2583	0.66	-0.9
2,598,760	-		GFF2583	0.67	+0.1
2,598,762	+		GFF2583	0.67	+0.6
2,598,799	+		GFF2583	0.71	-0.2
2,598,804	+		GFF2583	0.71	-1.7
2,598,841	+		GFF2583	0.75	+1.6
2,598,842	+		GFF2583	0.75	-0.4
2,598,849	-		GFF2583	0.76	-0.3
2,598,849	-		GFF2583	0.76	+0.2
2,598,849	-		GFF2583	0.76	+0.7
2,598,873	-		GFF2583	0.78	-0.6
2,598,887	-		GFF2583	0.79	-0.2
2,598,917	-		GFF2583	0.82	-0.8
2,598,918	-		GFF2583	0.82	-0.4
2,598,924	-		GFF2583	0.83	+0.5
2,598,930	-		GFF2583	0.84	+0.6
2,598,944	+		GFF2583	0.85	-2.6
2,598,944	+		GFF2583	0.85	-1.2
2,598,952	-		GFF2583	0.86	+0.2
2,598,956	+		GFF2583	0.86	-0.1
2,598,962	-		GFF2583	0.87	+0.6
2,598,964	-		GFF2583	0.87	+0.5
2,598,964	-		GFF2583	0.87	+0.8
2,598,964	-		GFF2583	0.87	+0.0
2,598,978	-		GFF2583	0.88	-0.3
2,599,015	+				+0.5
2,599,018	-				+0.4
2,599,025	+				+1.7
2,599,060	+				+1.4
2,599,068	-				+0.0
2,599,094	-				+0.5
2,599,129	+		GFF2584	0.14	+0.7
2,599,131	+		GFF2584	0.16	-0.7
2,599,131	+		GFF2584	0.16	+1.3
2,599,139	-		GFF2584	0.22	-1.1
2,599,139	-		GFF2584	0.22	+0.2
2,599,139	-		GFF2584	0.22	+0.9
2,599,140	+		GFF2584	0.22	-1.5
2,599,147	-		GFF2584	0.28	+0.2
2,599,150	+		GFF2584	0.30	+1.6
2,599,158	+		GFF2584	0.36	+0.3
2,599,158	-		GFF2584	0.36	+0.3
2,599,158	-		GFF2584	0.36	+0.5
2,599,187	-		GFF2584	0.59	+0.4
2,599,205	+		GFF2584	0.73	-0.7
2,599,205	+		GFF2584	0.73	+0.0
2,599,205	+		GFF2584	0.73	-0.9
2,599,205	+		GFF2584	0.73	-0.1
2,599,213	-		GFF2584	0.79	+0.3
2,599,213	-		GFF2584	0.79	+0.2
2,599,218	-		GFF2584	0.83	-0.5
2,599,231	+				+0.4
2,599,231	+				+0.3
2,599,231	+				-0.3
2,599,231	+				-2.0
2,599,231	+				-0.9
2,599,231	+				+0.0
2,599,231	+				-0.2
2,599,231	+				-1.2
2,599,231	+				-1.9
2,599,231	+				+0.1
2,599,233	+				-2.5
2,599,233	+				-0.4
2,599,239	-				-0.5
2,599,239	-				-0.0
2,599,239	-				-2.0
2,599,239	-				-0.8
2,599,239	-				-0.3
2,599,239	-				-0.6
2,599,239	-				+1.4
2,599,239	-				+0.4
2,599,241	-				+0.4
2,599,241	-				+0.1
2,599,241	-				-2.0
2,599,273	-				+0.6
2,599,273	-				-0.2
2,599,280	-				+1.2
2,599,315	-				-1.2
2,599,323	+				-0.5
2,599,325	-				-0.3
2,599,326	-				-0.0
2,599,331	-				-0.2
2,599,335	+				+0.4
2,599,335	+				+0.1
2,599,344	-				-0.0
2,599,345	+				-0.7
2,599,358	+				+0.9
2,599,366	-				+1.0
2,599,368	+				-1.2
2,599,368	-				-0.2
2,599,373	+				-0.3
2,599,380	-				-2.6
2,599,382	+				-2.0
2,599,390	-				-0.6
2,599,398	+				+0.1
2,599,406	+				-0.4
2,599,406	+				-0.5
2,599,406	+				-1.8
2,599,406	+				+0.2
2,599,406	+				-0.1
2,599,406	+				+1.1
2,599,406	+				-0.3
2,599,406	+				+0.1
2,599,409	-				-1.9
2,599,414	-				-0.2
2,599,414	-				-0.3
2,599,414	-				+0.2
2,599,414	-				-1.1
2,599,414	-				-2.1
2,599,414	-				-0.2
2,599,414	-				-1.7
2,599,414	-				-1.5
2,599,414	-				+0.3
2,599,414	-				+0.0
2,599,414	-				+0.6
2,599,414	-				+0.7
2,599,414	-				+0.4
2,599,418	+				+0.8
2,599,428	+				+0.2
2,599,433	+				+0.5
2,599,443	+		GFF2585	0.10	+0.6
2,599,443	+		GFF2585	0.10	-0.9
2,599,443	+		GFF2585	0.10	+0.7
2,599,449	+		GFF2585	0.10	+0.9
2,599,451	-		GFF2585	0.10	+0.5
2,599,479	+		GFF2585	0.12	-1.3
2,599,486	+		GFF2585	0.12	-1.4
2,599,515	-		GFF2585	0.14	+0.0
2,599,515	-		GFF2585	0.14	-2.6
2,599,515	-		GFF2585	0.14	-0.3
2,599,522	-		GFF2585	0.14	-0.4
2,599,533	-		GFF2585	0.14	+0.2
2,599,533	-		GFF2585	0.14	-0.8
2,599,533	-		GFF2585	0.14	+0.0
2,599,538	+		GFF2585	0.15	-1.4
2,599,538	+		GFF2585	0.15	-1.9
2,599,548	+		GFF2585	0.15	+0.4
2,599,548	+		GFF2585	0.15	+0.2
2,599,548	+		GFF2585	0.15	-0.4
2,599,556	-		GFF2585	0.16	-0.5
2,599,559	+		GFF2585	0.16	-0.4
2,599,560	+		GFF2585	0.16	+0.5
2,599,560	+		GFF2585	0.16	+0.8
2,599,561	-		GFF2585	0.16	-0.5
2,599,568	-		GFF2585	0.16	+0.2
2,599,575	+		GFF2585	0.16	+0.0
2,599,575	+		GFF2585	0.16	+0.2
2,599,580	+		GFF2585	0.17	+0.5
2,599,580	+		GFF2585	0.17	-1.5
2,599,589	+		GFF2585	0.17	-1.4
2,599,597	-		GFF2585	0.18	+1.3
2,599,599	-		GFF2585	0.18	+0.2
2,599,626	-		GFF2585	0.19	-0.4
2,599,633	-		GFF2585	0.19	+0.1
2,599,680	+		GFF2585	0.22	-1.3
2,599,683	+		GFF2585	0.22	-0.6
2,599,683	+		GFF2585	0.22	+1.6
2,599,693	-		GFF2585	0.22	+0.7
2,599,693	-		GFF2585	0.22	-0.7
2,599,693	-		GFF2585	0.22	-0.7
2,599,697	-		GFF2585	0.22	+0.7
2,599,729	-		GFF2585	0.24	-0.3
2,599,729	-		GFF2585	0.24	-1.3
2,599,729	-		GFF2585	0.24	-0.0
2,599,754	+		GFF2585	0.25	-0.9
2,599,768	+		GFF2585	0.26	-1.8
2,599,776	-		GFF2585	0.26	-1.7
2,599,782	-		GFF2585	0.27	-0.6
2,599,782	-		GFF2585	0.27	-2.7
2,599,819	+		GFF2585	0.28	+0.7
2,599,822	-		GFF2585	0.29	+0.1
2,599,823	+		GFF2585	0.29	-0.5
2,599,831	-		GFF2585	0.29	-2.8
2,599,832	-		GFF2585	0.29	-0.0
2,599,836	+		GFF2585	0.29	-0.6
2,599,854	-		GFF2585	0.30	-0.4
2,599,890	-		GFF2585	0.32	+0.4
2,599,890	-		GFF2585	0.32	+0.3
2,599,890	-		GFF2585	0.32	-0.1
2,599,890	-		GFF2585	0.32	-0.2
2,599,923	+		GFF2585	0.34	+0.3
2,599,923	+		GFF2585	0.34	-0.9
2,599,923	+		GFF2585	0.34	-1.1
2,599,931	-		GFF2585	0.34	+0.9
2,599,931	-		GFF2585	0.34	-0.3
2,599,931	-		GFF2585	0.34	-1.0
2,599,932	-		GFF2585	0.34	+0.0
2,599,932	-		GFF2585	0.34	-1.4
2,599,970	+		GFF2585	0.36	-0.2
2,600,006	-		GFF2585	0.38	+0.2
2,600,008	+		GFF2585	0.38	-0.4
2,600,018	+		GFF2585	0.38	-0.2
2,600,026	-		GFF2585	0.39	+0.5
2,600,026	-		GFF2585	0.39	+0.4
2,600,031	+		GFF2585	0.39	+1.3
2,600,036	-		GFF2585	0.39	-1.4
2,600,041	-		GFF2585	0.39	-0.0
2,600,041	-		GFF2585	0.39	+0.7
2,600,095	-		GFF2585	0.42	-0.7
2,600,095	-		GFF2585	0.42	-2.3
2,600,108	+		GFF2585	0.43	-0.4
2,600,108	+		GFF2585	0.43	-1.8
2,600,115	+		GFF2585	0.43	-2.6
2,600,116	-		GFF2585	0.43	-1.3
2,600,116	-		GFF2585	0.43	+0.2
2,600,123	-		GFF2585	0.43	-1.7
2,600,135	+		GFF2585	0.44	-0.9
2,600,136	+		GFF2585	0.44	-0.6
2,600,139	-		GFF2585	0.44	-0.7
2,600,139	-		GFF2585	0.44	-2.9
2,600,143	-		GFF2585	0.44	-1.1
2,600,155	+		GFF2585	0.45	-1.0
2,600,163	+		GFF2585	0.45	+0.1
2,600,173	+		GFF2585	0.46	-0.1
2,600,183	-		GFF2585	0.46	-0.3
2,600,197	+		GFF2585	0.47	-0.6
2,600,197	+		GFF2585	0.47	-0.9
2,600,197	+		GFF2585	0.47	+0.1
2,600,212	+		GFF2585	0.48	+0.3