Strain Fitness in Sphingobium sp. HT1-2 around GFF243

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF241 and GFF242 are separated by 142 nucleotidesGFF242 and GFF243 overlap by 8 nucleotidesGFF243 and GFF244 overlap by 4 nucleotides GFF241 - hypothetical protein, at 245,982 to 246,404 GFF241 GFF242 - Ribonuclease T2 family protein, at 246,547 to 247,254 GFF242 GFF243 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 247,247 to 248,101 GFF243 GFF244 - Prolyl endopeptidase (EC 3.4.21.26), at 248,098 to 250,224 GFF244 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 246.253 kb on + strand, within GFF241at 246.278 kb on + strand, within GFF241at 246.278 kb on + strand, within GFF241at 246.286 kb on - strand, within GFF241at 246.360 kb on - strand, within GFF241at 246.368 kb on - strandat 246.379 kb on + strandat 246.403 kb on + strandat 246.411 kb on - strandat 246.419 kb on - strandat 246.457 kb on + strandat 246.457 kb on + strandat 246.457 kb on + strandat 246.465 kb on - strandat 246.465 kb on - strandat 246.465 kb on - strandat 246.467 kb on + strandat 246.467 kb on + strandat 246.475 kb on - strandat 246.477 kb on + strandat 246.485 kb on - strandat 246.485 kb on - strandat 246.491 kb on + strandat 246.492 kb on - strandat 246.499 kb on - strandat 246.511 kb on - strandat 246.518 kb on - strandat 246.551 kb on - strandat 246.551 kb on - strandat 246.552 kb on - strandat 246.553 kb on + strandat 246.563 kb on + strandat 246.563 kb on + strandat 246.581 kb on - strandat 246.595 kb on + strandat 246.635 kb on + strand, within GFF242at 246.635 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.641 kb on - strand, within GFF242at 246.643 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.655 kb on - strand, within GFF242at 246.665 kb on - strand, within GFF242at 246.704 kb on + strand, within GFF242at 246.704 kb on + strand, within GFF242at 246.704 kb on + strand, within GFF242at 246.704 kb on + strand, within GFF242at 246.706 kb on - strand, within GFF242at 246.709 kb on + strand, within GFF242at 246.709 kb on + strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.719 kb on + strand, within GFF242at 246.727 kb on - strand, within GFF242at 246.731 kb on + strand, within GFF242at 246.731 kb on + strand, within GFF242at 246.739 kb on - strand, within GFF242at 246.777 kb on + strand, within GFF242at 246.777 kb on + strand, within GFF242at 246.785 kb on - strand, within GFF242at 246.790 kb on - strand, within GFF242at 246.792 kb on + strand, within GFF242at 246.792 kb on + strand, within GFF242at 246.795 kb on - strand, within GFF242at 246.800 kb on - strand, within GFF242at 246.800 kb on - strand, within GFF242at 246.802 kb on - strand, within GFF242at 246.805 kb on - strand, within GFF242at 246.843 kb on + strand, within GFF242at 246.858 kb on + strand, within GFF242at 246.865 kb on - strand, within GFF242at 246.865 kb on - strand, within GFF242at 246.874 kb on - strand, within GFF242at 246.885 kb on + strand, within GFF242at 246.893 kb on - strand, within GFF242at 246.899 kb on + strand, within GFF242at 246.904 kb on - strand, within GFF242at 246.923 kb on - strand, within GFF242at 246.924 kb on - strand, within GFF242at 246.962 kb on - strand, within GFF242at 246.978 kb on - strand, within GFF242at 246.983 kb on + strand, within GFF242at 246.999 kb on + strand, within GFF242at 246.999 kb on + strand, within GFF242at 247.030 kb on + strand, within GFF242at 247.032 kb on + strand, within GFF242at 247.077 kb on + strand, within GFF242at 247.087 kb on - strand, within GFF242at 247.130 kb on - strand, within GFF242at 247.131 kb on + strand, within GFF242at 247.131 kb on + strand, within GFF242at 247.137 kb on + strand, within GFF242at 247.169 kb on + strand, within GFF242at 247.187 kb on + strandat 247.187 kb on + strandat 247.193 kb on + strandat 247.193 kb on + strandat 247.197 kb on + strandat 247.198 kb on + strandat 247.208 kb on + strandat 247.222 kb on - strandat 247.237 kb on - strandat 247.252 kb on - strandat 247.257 kb on + strandat 247.257 kb on + strandat 247.265 kb on - strandat 247.274 kb on + strandat 247.284 kb on + strandat 247.285 kb on + strandat 247.321 kb on - strandat 247.321 kb on - strandat 247.359 kb on - strand, within GFF243at 247.388 kb on - strand, within GFF243at 247.392 kb on + strand, within GFF243at 247.392 kb on + strand, within GFF243at 247.402 kb on + strand, within GFF243at 247.402 kb on + strand, within GFF243at 247.405 kb on - strand, within GFF243at 247.405 kb on - strand, within GFF243at 247.410 kb on - strand, within GFF243at 247.410 kb on - strand, within GFF243at 247.410 kb on - strand, within GFF243at 247.410 kb on - strand, within GFF243at 247.428 kb on - strand, within GFF243at 247.428 kb on - strand, within GFF243at 247.428 kb on - strand, within GFF243at 247.476 kb on + strand, within GFF243at 247.476 kb on + strand, within GFF243at 247.494 kb on - strand, within GFF243at 247.506 kb on + strand, within GFF243at 247.511 kb on + strand, within GFF243at 247.511 kb on + strand, within GFF243at 247.592 kb on - strand, within GFF243at 247.612 kb on - strand, within GFF243at 247.612 kb on - strand, within GFF243at 247.669 kb on + strand, within GFF243at 247.680 kb on + strand, within GFF243at 247.715 kb on - strand, within GFF243at 247.717 kb on + strand, within GFF243at 247.718 kb on - strand, within GFF243at 247.720 kb on - strand, within GFF243at 247.736 kb on - strand, within GFF243at 247.758 kb on + strand, within GFF243at 247.771 kb on - strand, within GFF243at 247.771 kb on - strand, within GFF243at 247.773 kb on + strand, within GFF243at 247.776 kb on - strand, within GFF243at 247.781 kb on - strand, within GFF243at 247.782 kb on + strand, within GFF243at 247.783 kb on - strand, within GFF243at 247.794 kb on + strand, within GFF243at 247.802 kb on - strand, within GFF243at 247.802 kb on - strand, within GFF243at 247.804 kb on - strand, within GFF243at 247.806 kb on + strand, within GFF243at 247.814 kb on - strand, within GFF243at 247.818 kb on + strand, within GFF243at 247.860 kb on + strand, within GFF243at 247.879 kb on - strand, within GFF243at 247.885 kb on + strand, within GFF243at 247.915 kb on - strand, within GFF243at 247.925 kb on + strand, within GFF243at 247.948 kb on + strand, within GFF243at 247.958 kb on + strand, within GFF243at 247.961 kb on - strand, within GFF243at 247.978 kb on - strand, within GFF243at 247.986 kb on + strand, within GFF243at 247.994 kb on - strand, within GFF243at 248.019 kb on - strandat 248.020 kb on + strandat 248.034 kb on - strandat 248.044 kb on + strandat 248.063 kb on - strandat 248.068 kb on + strandat 248.076 kb on - strandat 248.081 kb on - strandat 248.081 kb on - strandat 248.107 kb on - strandat 248.125 kb on + strandat 248.126 kb on - strandat 248.134 kb on + strandat 248.142 kb on + strandat 248.143 kb on - strandat 248.153 kb on - strandat 248.172 kb on + strandat 248.172 kb on + strandat 248.188 kb on + strandat 248.222 kb on + strandat 248.266 kb on + strandat 248.274 kb on - strandat 248.274 kb on - strandat 248.279 kb on + strandat 248.279 kb on + strandat 248.290 kb on + strandat 248.320 kb on - strand, within GFF244at 248.328 kb on - strand, within GFF244at 248.349 kb on - strand, within GFF244at 248.403 kb on - strand, within GFF244at 248.443 kb on - strand, within GFF244at 248.467 kb on + strand, within GFF244at 248.485 kb on - strand, within GFF244at 248.495 kb on - strand, within GFF244at 248.495 kb on - strand, within GFF244at 248.515 kb on + strand, within GFF244at 248.523 kb on - strand, within GFF244at 248.523 kb on - strand, within GFF244at 248.523 kb on - strand, within GFF244at 248.525 kb on - strand, within GFF244at 248.576 kb on + strand, within GFF244at 248.576 kb on + strand, within GFF244at 248.576 kb on + strand, within GFF244at 248.584 kb on - strand, within GFF244at 248.584 kb on - strand, within GFF244at 248.640 kb on + strand, within GFF244at 248.648 kb on - strand, within GFF244at 248.650 kb on + strand, within GFF244at 248.665 kb on + strand, within GFF244at 248.697 kb on - strand, within GFF244at 248.701 kb on + strand, within GFF244at 248.702 kb on - strand, within GFF244at 248.709 kb on - strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.717 kb on + strand, within GFF244at 248.720 kb on - strand, within GFF244at 248.720 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.725 kb on - strand, within GFF244at 248.727 kb on + strand, within GFF244at 248.749 kb on - strand, within GFF244at 248.749 kb on - strand, within GFF244at 248.773 kb on + strand, within GFF244at 248.776 kb on - strand, within GFF244at 248.827 kb on + strand, within GFF244at 248.834 kb on + strand, within GFF244at 248.862 kb on + strand, within GFF244at 248.862 kb on + strand, within GFF244at 248.862 kb on + strand, within GFF244at 248.862 kb on + strand, within GFF244at 248.870 kb on - strand, within GFF244at 248.870 kb on - strand, within GFF244at 248.870 kb on - strand, within GFF244at 248.885 kb on + strand, within GFF244at 248.888 kb on - strand, within GFF244at 248.910 kb on + strand, within GFF244at 248.918 kb on - strand, within GFF244at 248.923 kb on - strand, within GFF244at 248.934 kb on - strand, within GFF244at 248.938 kb on - strand, within GFF244at 248.973 kb on + strand, within GFF244at 248.981 kb on - strand, within GFF244at 248.998 kb on + strand, within GFF244at 248.998 kb on + strand, within GFF244at 249.007 kb on - strand, within GFF244at 249.007 kb on - strand, within GFF244at 249.011 kb on + strand, within GFF244at 249.034 kb on - strand, within GFF244at 249.034 kb on - strand, within GFF244at 249.046 kb on - strand, within GFF244at 249.054 kb on - strand, within GFF244at 249.092 kb on - strand, within GFF244at 249.096 kb on - strand, within GFF244

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
246,253 + GFF241 0.64 +1.0
246,278 + GFF241 0.70 +0.1
246,278 + GFF241 0.70 -1.0
246,286 - GFF241 0.72 -0.7
246,360 - GFF241 0.89 -0.2
246,368 - +0.2
246,379 + +1.3
246,403 + -0.4
246,411 - +0.1
246,419 - -2.2
246,457 + +0.4
246,457 + +0.3
246,457 + +0.4
246,465 - -2.2
246,465 - -0.6
246,465 - -0.7
246,467 + +0.9
246,467 + -0.1
246,475 - +0.2
246,477 + -0.5
246,485 - +0.1
246,485 - -0.2
246,491 + -0.4
246,492 - +1.7
246,499 - -1.4
246,511 - +0.8
246,518 - +1.9
246,551 - -1.4
246,551 - -0.6
246,552 - -1.4
246,553 + -0.4
246,563 + +0.1
246,563 + +1.1
246,581 - +0.5
246,595 + -0.4
246,635 + GFF242 0.12 -0.7
246,635 + GFF242 0.12 -0.6
246,640 + GFF242 0.13 +1.9
246,640 + GFF242 0.13 -0.2
246,640 + GFF242 0.13 +0.2
246,640 + GFF242 0.13 +0.6
246,641 - GFF242 0.13 +0.3
246,643 - GFF242 0.14 -1.6
246,648 - GFF242 0.14 -0.2
246,648 - GFF242 0.14 -0.5
246,648 - GFF242 0.14 -0.3
246,648 - GFF242 0.14 -2.3
246,655 - GFF242 0.15 +1.1
246,665 - GFF242 0.17 +1.5
246,704 + GFF242 0.22 +0.0
246,704 + GFF242 0.22 -0.4
246,704 + GFF242 0.22 +0.8
246,704 + GFF242 0.22 -0.5
246,706 - GFF242 0.22 +0.7
246,709 + GFF242 0.23 -0.1
246,709 + GFF242 0.23 -2.0
246,712 - GFF242 0.23 +1.5
246,712 - GFF242 0.23 -2.7
246,712 - GFF242 0.23 -0.1
246,712 - GFF242 0.23 +0.8
246,712 - GFF242 0.23 -2.1
246,719 + GFF242 0.24 +0.2
246,727 - GFF242 0.25 -0.2
246,731 + GFF242 0.26 +0.7
246,731 + GFF242 0.26 +0.8
246,739 - GFF242 0.27 -2.5
246,777 + GFF242 0.32 -0.7
246,777 + GFF242 0.32 +1.6
246,785 - GFF242 0.34 +0.7
246,790 - GFF242 0.34 +0.3
246,792 + GFF242 0.35 -0.6
246,792 + GFF242 0.35 -1.2
246,795 - GFF242 0.35 +1.9
246,800 - GFF242 0.36 -1.6
246,800 - GFF242 0.36 -0.2
246,802 - GFF242 0.36 -0.4
246,805 - GFF242 0.36 -2.4
246,843 + GFF242 0.42 +0.4
246,858 + GFF242 0.44 -1.8
246,865 - GFF242 0.45 -0.4
246,865 - GFF242 0.45 -2.3
246,874 - GFF242 0.46 -0.9
246,885 + GFF242 0.48 -0.4
246,893 - GFF242 0.49 +0.7
246,899 + GFF242 0.50 -0.8
246,904 - GFF242 0.50 +0.5
246,923 - GFF242 0.53 +0.5
246,924 - GFF242 0.53 -0.0
246,962 - GFF242 0.59 +0.8
246,978 - GFF242 0.61 -0.3
246,983 + GFF242 0.62 -1.9
246,999 + GFF242 0.64 +0.8
246,999 + GFF242 0.64 +0.9
247,030 + GFF242 0.68 -0.1
247,032 + GFF242 0.69 +0.8
247,077 + GFF242 0.75 -0.1
247,087 - GFF242 0.76 +0.4
247,130 - GFF242 0.82 +0.7
247,131 + GFF242 0.82 +0.3
247,131 + GFF242 0.82 -0.9
247,137 + GFF242 0.83 -0.9
247,169 + GFF242 0.88 -0.6
247,187 + -0.5
247,187 + +0.5
247,193 + +0.1
247,193 + +0.3
247,197 + -1.4
247,198 + -0.6
247,208 + -0.5
247,222 - -0.5
247,237 - +1.0
247,252 - -0.5
247,257 + +0.5
247,257 + -0.1
247,265 - -0.5
247,274 + -1.6
247,284 + -1.6
247,285 + -3.0
247,321 - -0.1
247,321 - -1.5
247,359 - GFF243 0.13 +0.0
247,388 - GFF243 0.16 -0.7
247,392 + GFF243 0.17 -2.3
247,392 + GFF243 0.17 -1.0
247,402 + GFF243 0.18 -2.4
247,402 + GFF243 0.18 -0.5
247,405 - GFF243 0.18 -0.4
247,405 - GFF243 0.18 -1.9
247,410 - GFF243 0.19 -1.4
247,410 - GFF243 0.19 -1.3
247,410 - GFF243 0.19 -1.9
247,410 - GFF243 0.19 -1.9
247,428 - GFF243 0.21 -0.2
247,428 - GFF243 0.21 -0.5
247,428 - GFF243 0.21 -0.1
247,476 + GFF243 0.27 -0.9
247,476 + GFF243 0.27 -1.5
247,494 - GFF243 0.29 -1.3
247,506 + GFF243 0.30 -2.3
247,511 + GFF243 0.31 -2.0
247,511 + GFF243 0.31 -1.4
247,592 - GFF243 0.40 +0.1
247,612 - GFF243 0.43 -0.5
247,612 - GFF243 0.43 -1.9
247,669 + GFF243 0.49 -0.8
247,680 + GFF243 0.51 -0.4
247,715 - GFF243 0.55 -1.9
247,717 + GFF243 0.55 -0.8
247,718 - GFF243 0.55 -1.2
247,720 - GFF243 0.55 -1.5
247,736 - GFF243 0.57 -2.4
247,758 + GFF243 0.60 -0.1
247,771 - GFF243 0.61 -2.2
247,771 - GFF243 0.61 -2.0
247,773 + GFF243 0.62 -2.1
247,776 - GFF243 0.62 -2.8
247,781 - GFF243 0.62 -0.7
247,782 + GFF243 0.63 -1.6
247,783 - GFF243 0.63 -1.3
247,794 + GFF243 0.64 -1.8
247,802 - GFF243 0.65 -1.4
247,802 - GFF243 0.65 -2.4
247,804 - GFF243 0.65 -1.4
247,806 + GFF243 0.65 +0.3
247,814 - GFF243 0.66 -1.9
247,818 + GFF243 0.67 -1.1
247,860 + GFF243 0.72 -1.8
247,879 - GFF243 0.74 +0.2
247,885 + GFF243 0.75 -0.6
247,915 - GFF243 0.78 -1.6
247,925 + GFF243 0.79 -0.5
247,948 + GFF243 0.82 -1.5
247,958 + GFF243 0.83 -2.0
247,961 - GFF243 0.84 -2.0
247,978 - GFF243 0.85 -1.3
247,986 + GFF243 0.86 -0.5
247,994 - GFF243 0.87 +0.8
248,019 - -1.3
248,020 + -1.5
248,034 - -0.7
248,044 + +0.3
248,063 - -1.3
248,068 + -0.7
248,076 - -1.3
248,081 - -1.5
248,081 - -2.1
248,107 - -1.8
248,125 + -1.0
248,126 - +1.1
248,134 + -1.5
248,142 + +0.4
248,143 - +0.1
248,153 - -1.0
248,172 + -1.5
248,172 + -1.7
248,188 + +0.1
248,222 + +0.1
248,266 + -0.3
248,274 - +0.5
248,274 - -1.4
248,279 + +1.2
248,279 + -0.8
248,290 + -0.2
248,320 - GFF244 0.10 -1.1
248,328 - GFF244 0.11 -1.4
248,349 - GFF244 0.12 -0.3
248,403 - GFF244 0.14 +0.5
248,443 - GFF244 0.16 -1.6
248,467 + GFF244 0.17 -1.4
248,485 - GFF244 0.18 -0.2
248,495 - GFF244 0.19 -1.6
248,495 - GFF244 0.19 -0.7
248,515 + GFF244 0.20 +1.0
248,523 - GFF244 0.20 -0.8
248,523 - GFF244 0.20 -0.6
248,523 - GFF244 0.20 -0.0
248,525 - GFF244 0.20 -1.7
248,576 + GFF244 0.22 +0.1
248,576 + GFF244 0.22 -2.0
248,576 + GFF244 0.22 -1.1
248,584 - GFF244 0.23 +0.8
248,584 - GFF244 0.23 -1.6
248,640 + GFF244 0.25 +1.1
248,648 - GFF244 0.26 -0.4
248,650 + GFF244 0.26 -0.5
248,665 + GFF244 0.27 -0.7
248,697 - GFF244 0.28 -0.0
248,701 + GFF244 0.28 -1.8
248,702 - GFF244 0.28 -0.5
248,709 - GFF244 0.29 -0.2
248,717 + GFF244 0.29 +0.9
248,717 + GFF244 0.29 -0.7
248,717 + GFF244 0.29 +0.3
248,717 + GFF244 0.29 +0.9
248,717 + GFF244 0.29 -1.0
248,717 + GFF244 0.29 -3.0
248,717 + GFF244 0.29 +0.7
248,720 - GFF244 0.29 -0.8
248,720 - GFF244 0.29 -0.4
248,725 - GFF244 0.29 -1.3
248,725 - GFF244 0.29 -0.4
248,725 - GFF244 0.29 +0.9
248,725 - GFF244 0.29 -0.1
248,725 - GFF244 0.29 -0.4
248,725 - GFF244 0.29 -1.4
248,725 - GFF244 0.29 +1.8
248,725 - GFF244 0.29 +0.2
248,725 - GFF244 0.29 +0.1
248,725 - GFF244 0.29 +0.2
248,725 - GFF244 0.29 -0.5
248,725 - GFF244 0.29 +0.3
248,725 - GFF244 0.29 +0.2
248,725 - GFF244 0.29 +1.4
248,725 - GFF244 0.29 -0.9
248,727 + GFF244 0.30 -1.0
248,749 - GFF244 0.31 -1.3
248,749 - GFF244 0.31 -0.8
248,773 + GFF244 0.32 -0.8
248,776 - GFF244 0.32 -0.4
248,827 + GFF244 0.34 +0.1
248,834 + GFF244 0.35 -0.9
248,862 + GFF244 0.36 +1.0
248,862 + GFF244 0.36 -0.0
248,862 + GFF244 0.36 +0.1
248,862 + GFF244 0.36 -0.6
248,870 - GFF244 0.36 -1.3
248,870 - GFF244 0.36 +0.3
248,870 - GFF244 0.36 -1.5
248,885 + GFF244 0.37 -1.1
248,888 - GFF244 0.37 +1.7
248,910 + GFF244 0.38 +0.1
248,918 - GFF244 0.39 -1.3
248,923 - GFF244 0.39 -0.3
248,934 - GFF244 0.39 -2.3
248,938 - GFF244 0.39 +2.1
248,973 + GFF244 0.41 -1.5
248,981 - GFF244 0.42 -1.0
248,998 + GFF244 0.42 -0.2
248,998 + GFF244 0.42 -1.4
249,007 - GFF244 0.43 +0.4
249,007 - GFF244 0.43 -0.4
249,011 + GFF244 0.43 +0.8
249,034 - GFF244 0.44 +0.2
249,034 - GFF244 0.44 -2.6
249,046 - GFF244 0.45 -2.0
249,054 - GFF244 0.45 -0.4
249,092 - GFF244 0.47 -1.0
249,096 - GFF244 0.47 -1.3

Or see this region's nucleotide sequence