Strain Fitness in Sphingobium sp. HT1-2 around GFF2394

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,414,376	-				-0.4
2,414,376	-				+0.6
2,414,385	+				-0.1
2,414,385	+				-3.0
2,414,385	+				-0.9
2,414,385	+				-0.4
2,414,385	+				-0.4
2,414,385	+				-1.3
2,414,393	-				-0.3
2,414,393	-				-0.4
2,414,393	-				+0.1
2,414,393	-				-0.4
2,414,395	+				-0.2
2,414,408	-				+0.6
2,414,411	-				-0.0
2,414,422	-				-0.6
2,414,432	-				-0.5
2,414,435	+				+1.3
2,414,446	+				+0.4
2,414,446	+				-0.4
2,414,460	-				-0.3
2,414,461	+				-0.1
2,414,462	+				-0.1
2,414,479	-				+0.6
2,414,484	+				+0.3
2,414,516	+				-0.5
2,414,524	-				-2.7
2,414,546	-		GFF2393	0.11	-0.3
2,414,583	-		GFF2393	0.16	-1.5
2,414,600	-		GFF2393	0.18	+0.3
2,414,602	-		GFF2393	0.18	-1.5
2,414,616	+		GFF2393	0.20	-0.2
2,414,634	+		GFF2393	0.22	+0.7
2,414,635	+		GFF2393	0.22	+1.4
2,414,643	-		GFF2393	0.23	-0.7
2,414,646	+		GFF2393	0.23	+0.1
2,414,681	-		GFF2393	0.27	+1.2
2,414,685	+		GFF2393	0.28	+0.1
2,414,689	-		GFF2393	0.28	+0.9
2,414,690	+		GFF2393	0.28	+0.6
2,414,690	+		GFF2393	0.28	+0.2
2,414,690	+		GFF2393	0.28	-0.3
2,414,692	+		GFF2393	0.29	-1.1
2,414,693	-		GFF2393	0.29	-0.2
2,414,693	-		GFF2393	0.29	+0.8
2,414,705	-		GFF2393	0.30	-0.5
2,414,733	-		GFF2393	0.34	+0.7
2,414,734	-		GFF2393	0.34	+0.4
2,414,744	+		GFF2393	0.35	+0.3
2,414,766	-		GFF2393	0.37	-0.6
2,414,766	-		GFF2393	0.37	+0.2
2,414,766	-		GFF2393	0.37	+0.7
2,414,766	-		GFF2393	0.37	+1.3
2,414,772	-		GFF2393	0.38	+0.1
2,414,783	+		GFF2393	0.39	-2.0
2,414,783	+		GFF2393	0.39	+0.8
2,414,791	-		GFF2393	0.40	-0.9
2,414,798	-		GFF2393	0.41	-1.9
2,414,803	-		GFF2393	0.42	+0.2
2,414,840	+		GFF2393	0.46	-1.5
2,414,914	+		GFF2393	0.55	-0.9
2,414,914	+		GFF2393	0.55	+0.8
2,414,975	+		GFF2393	0.62	+0.3
2,414,981	+		GFF2393	0.63	-0.9
2,414,985	+		GFF2393	0.63	-0.7
2,414,993	-		GFF2393	0.64	-3.1
2,415,008	-		GFF2393	0.66	+0.2
2,415,012	-		GFF2393	0.67	-0.5
2,415,016	+		GFF2393	0.67	+1.5
2,415,016	+		GFF2393	0.67	-0.4
2,415,016	+		GFF2393	0.67	+1.2
2,415,028	+		GFF2393	0.68	-0.4
2,415,034	+		GFF2393	0.69	+0.6
2,415,058	-		GFF2393	0.72	-0.4
2,415,072	+		GFF2393	0.74	-1.9
2,415,072	+		GFF2393	0.74	-0.1
2,415,079	+		GFF2393	0.74	-0.8
2,415,079	+		GFF2393	0.74	-0.2
2,415,079	+		GFF2393	0.74	+0.0
2,415,080	-		GFF2393	0.75	+0.3
2,415,087	-		GFF2393	0.75	-0.5
2,415,094	-		GFF2393	0.76	-0.9
2,415,096	+		GFF2393	0.76	-0.6
2,415,159	+		GFF2393	0.84	-0.0
2,415,195	+		GFF2393	0.88	-0.2
2,415,195	+		GFF2393	0.88	-2.4
2,415,195	+		GFF2393	0.88	-0.9
2,415,198	-		GFF2393	0.89	+0.1
2,415,203	-		GFF2393	0.89	-1.0
2,415,203	-		GFF2393	0.89	-0.2
2,415,203	-		GFF2393	0.89	-1.4
2,415,203	-		GFF2393	0.89	+0.8
2,415,203	-		GFF2393	0.89	+1.1
2,415,203	-		GFF2393	0.89	-1.2
2,415,297	-				-1.9
2,415,297	-				+1.1
2,415,302	+				-1.8
2,415,311	+				-0.4
2,415,311	+				+0.3
2,415,311	+				-1.4
2,415,323	-				+0.3
2,415,333	-				-0.2
2,415,346	+				+1.6
2,415,369	+				+0.1
2,415,376	+				-1.3
2,415,376	+				+0.3
2,415,377	+				-2.4
2,415,378	-				-0.0
2,415,378	-				+1.2
2,415,378	-				+0.0
2,415,384	-		GFF2394	0.11	-0.1
2,415,391	-		GFF2394	0.17	-1.8
2,415,391	-		GFF2394	0.17	-1.6
2,415,391	-		GFF2394	0.17	-0.8
2,415,391	-		GFF2394	0.17	-1.0
2,415,426	-		GFF2394	0.47	+0.3
2,415,431	-		GFF2394	0.52	-0.1
2,415,450	-		GFF2394	0.68	-1.5
2,415,468	+		GFF2394	0.84	-0.6
2,415,486	+				-1.4
2,415,486	+				+0.1
2,415,488	-				-0.0
2,415,489	-				+0.5
2,415,491	+				-1.0
2,415,494	-				-0.9
2,415,494	-				-1.8
2,415,494	-				-1.8
2,415,494	-				-0.4
2,415,494	-				+1.1
2,415,494	-				-0.9
2,415,499	-				+1.1
2,415,499	-				+0.1
2,415,500	-				-0.2
2,415,502	-				-0.5
2,415,504	-				+0.8
2,415,504	-				+0.2
2,415,515	+				-1.9
2,415,543	+				+0.6
2,415,559	+				+0.6
2,415,579	+				+0.2
2,415,579	+				+0.6
2,415,592	-				+1.0
2,415,618	+				+1.2
2,415,618	+				-0.5
2,415,618	+				+0.9
2,415,618	+				-0.6
2,415,626	-				+0.6
2,415,628	+				-0.1
2,415,628	+				-2.1
2,415,628	+				-1.0
2,415,628	-				+0.6
2,415,642	+				-0.4
2,415,652	+				-2.3
2,415,660	+				+0.2
2,415,660	-				-2.5
2,415,668	-				-0.2
2,415,669	+				-0.1
2,415,673	-				-0.4
2,415,684	+				+0.1
2,415,684	+				+0.3
2,415,684	+				-1.5
2,415,684	+				+0.1
2,415,704	+				-0.0
2,415,706	+				-0.0
2,415,714	-				+0.2
2,415,734	+				+1.0
2,415,734	+				+0.1
2,415,747	-				+0.9
2,415,747	-				+0.7
2,415,752	-				-0.4
2,415,752	-				-0.9
2,415,772	-				-0.4
2,415,794	+		GFF2395	0.11	-0.2
2,415,820	+		GFF2395	0.13	-1.4
2,415,820	+		GFF2395	0.13	-1.0
2,415,828	-		GFF2395	0.14	-1.6
2,415,849	+		GFF2395	0.16	-0.7
2,415,857	-		GFF2395	0.17	+0.6
2,415,857	-		GFF2395	0.17	+0.1
2,415,857	-		GFF2395	0.17	+0.3
2,415,865	+		GFF2395	0.17	-0.2
2,415,900	-		GFF2395	0.20	-0.0
2,415,905	-		GFF2395	0.21	-1.4
2,415,916	+		GFF2395	0.22	-1.9
2,415,922	+		GFF2395	0.22	+0.9
2,415,924	+		GFF2395	0.22	-1.6
2,415,924	-		GFF2395	0.22	-0.8
2,415,924	-		GFF2395	0.22	+0.1
2,415,924	-		GFF2395	0.22	-1.2
2,415,926	+		GFF2395	0.23	-0.7
2,415,940	-		GFF2395	0.24	-1.6
2,415,940	-		GFF2395	0.24	+0.3
2,415,941	+		GFF2395	0.24	-0.2
2,415,945	+		GFF2395	0.24	+0.8
2,415,945	+		GFF2395	0.24	-1.4
2,415,945	+		GFF2395	0.24	-0.5
2,415,945	+		GFF2395	0.24	-0.4
2,415,945	+		GFF2395	0.24	+0.4
2,415,945	+		GFF2395	0.24	-0.6
2,415,945	+		GFF2395	0.24	-0.9
2,415,945	+		GFF2395	0.24	-0.9
2,415,945	+		GFF2395	0.24	+0.6
2,415,945	+		GFF2395	0.24	-1.5
2,415,945	+		GFF2395	0.24	-0.9
2,415,945	+		GFF2395	0.24	+0.4
2,415,947	+		GFF2395	0.24	+0.4
2,415,953	-		GFF2395	0.25	-0.9
2,415,953	-		GFF2395	0.25	-0.5
2,415,953	-		GFF2395	0.25	+0.8
2,415,953	-		GFF2395	0.25	+2.1
2,415,953	-		GFF2395	0.25	+0.2
2,415,953	-		GFF2395	0.25	+0.6
2,415,953	-		GFF2395	0.25	-1.9
2,415,953	-		GFF2395	0.25	-0.9
2,415,970	-		GFF2395	0.26	-0.5
2,416,013	-		GFF2395	0.30	+0.9
2,416,025	-		GFF2395	0.31	-0.6
2,416,032	+		GFF2395	0.32	+0.6
2,416,032	+		GFF2395	0.32	-1.3
2,416,040	-		GFF2395	0.33	-2.4
2,416,040	-		GFF2395	0.33	-0.4
2,416,109	+		GFF2395	0.39	+0.0
2,416,119	+		GFF2395	0.39	+0.7
2,416,119	+		GFF2395	0.39	-0.6
2,416,119	+		GFF2395	0.39	+0.1
2,416,127	-		GFF2395	0.40	+0.1
2,416,127	-		GFF2395	0.40	-0.1
2,416,127	-		GFF2395	0.40	+0.9
2,416,138	+		GFF2395	0.41	+0.4
2,416,146	-		GFF2395	0.42	-0.9
2,416,170	-		GFF2395	0.44	+1.2
2,416,176	+		GFF2395	0.44	-1.0
2,416,178	+		GFF2395	0.45	-0.4
2,416,186	-		GFF2395	0.45	-0.9
2,416,186	-		GFF2395	0.45	-0.5
2,416,186	-		GFF2395	0.45	-0.9
2,416,193	+		GFF2395	0.46	-0.0
2,416,198	-		GFF2395	0.46	-0.5
2,416,201	-		GFF2395	0.47	+1.6
2,416,214	-		GFF2395	0.48	-0.7
2,416,221	+		GFF2395	0.48	+1.2
2,416,221	+		GFF2395	0.48	+0.4
2,416,229	-		GFF2395	0.49	-0.2
2,416,229	-		GFF2395	0.49	-1.6
2,416,229	-		GFF2395	0.49	-1.2
2,416,230	-		GFF2395	0.49	-2.5
2,416,230	-		GFF2395	0.49	-0.8
2,416,230	-		GFF2395	0.49	-0.8
2,416,240	+		GFF2395	0.50	+0.5
2,416,252	+		GFF2395	0.51	+0.2
2,416,308	-		GFF2395	0.56	+0.6
2,416,331	+		GFF2395	0.58	+0.6
2,416,339	-		GFF2395	0.59	-2.0
2,416,339	-		GFF2395	0.59	+0.1
2,416,372	-		GFF2395	0.62	+1.4
2,416,382	+		GFF2395	0.62	-1.0
2,416,390	-		GFF2395	0.63	-0.6
2,416,390	-		GFF2395	0.63	+0.0
2,416,390	-		GFF2395	0.63	-1.3
2,416,404	-		GFF2395	0.64	-0.2
2,416,406	-		GFF2395	0.64	-1.5
2,416,418	+		GFF2395	0.66	-0.3
2,416,467	+		GFF2395	0.70	+0.0
2,416,477	-		GFF2395	0.71	-1.7