Strain Fitness in Sphingobium sp. HT1-2 around GFF2335

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,358,331	+		GFF2333	0.19	+0.5
2,358,339	-		GFF2333	0.21	-1.6
2,358,339	-		GFF2333	0.21	-1.2
2,358,347	+		GFF2333	0.22	-0.3
2,358,369	+		GFF2333	0.26	-0.0
2,358,369	+		GFF2333	0.26	-0.2
2,358,374	+		GFF2333	0.26	-1.6
2,358,374	+		GFF2333	0.26	-0.4
2,358,374	+		GFF2333	0.26	+0.4
2,358,374	+		GFF2333	0.26	+0.3
2,358,382	-		GFF2333	0.28	-0.1
2,358,399	+		GFF2333	0.31	-1.1
2,358,404	+		GFF2333	0.31	-1.1
2,358,404	+		GFF2333	0.31	+1.2
2,358,412	+		GFF2333	0.33	-0.4
2,358,412	+		GFF2333	0.33	-0.4
2,358,420	-		GFF2333	0.34	-0.4
2,358,420	-		GFF2333	0.34	+0.0
2,358,456	+		GFF2333	0.40	-1.9
2,358,464	+		GFF2333	0.41	-1.8
2,358,464	+		GFF2333	0.41	+0.4
2,358,464	-		GFF2333	0.41	-0.2
2,358,472	-		GFF2333	0.42	-1.1
2,358,497	-		GFF2333	0.47	+0.9
2,358,507	-		GFF2333	0.48	-1.1
2,358,507	-		GFF2333	0.48	-1.9
2,358,516	+		GFF2333	0.50	+1.2
2,358,517	+		GFF2333	0.50	+1.2
2,358,525	-		GFF2333	0.51	-0.2
2,358,541	+		GFF2333	0.54	+0.1
2,358,545	-		GFF2333	0.54	+0.2
2,358,549	-		GFF2333	0.55	-0.4
2,358,620	+		GFF2333	0.67	-1.6
2,358,626	-		GFF2333	0.68	-0.6
2,358,628	+		GFF2333	0.68	-0.5
2,358,628	+		GFF2333	0.68	+1.4
2,358,652	-		GFF2333	0.72	-0.8
2,358,656	+		GFF2333	0.73	-0.7
2,358,659	-		GFF2333	0.73	+0.4
2,358,707	-		GFF2333	0.81	-1.2
2,358,746	-		GFF2333	0.87	-0.9
2,358,747	-		GFF2333	0.87	+0.1
2,358,751	-		GFF2333	0.88	+0.8
2,358,753	-		GFF2333	0.88	-0.4
2,358,761	+		GFF2333	0.90	-0.4
2,358,761	+		GFF2333	0.90	+0.8
2,358,761	+		GFF2333	0.90	-0.5
2,358,761	+		GFF2333	0.90	-1.4
2,358,769	-				+0.3
2,358,774	-				+0.1
2,358,774	-				-0.9
2,358,867	+				+0.0
2,358,915	+				+0.5
2,358,915	+				+0.4
2,358,917	-				+0.1
2,358,920	+				-0.6
2,358,957	-				-0.7
2,358,957	-				+0.1
2,359,003	-		GFF2334	0.18	-2.7
2,359,008	-		GFF2334	0.19	-1.6
2,359,008	-		GFF2334	0.19	+0.3
2,359,008	-		GFF2334	0.19	+0.5
2,359,030	+		GFF2334	0.24	+0.2
2,359,038	+		GFF2334	0.26	+0.0
2,359,038	-		GFF2334	0.26	-0.4
2,359,038	-		GFF2334	0.26	-1.9
2,359,054	-		GFF2334	0.31	-1.8
2,359,054	-		GFF2334	0.31	-1.1
2,359,063	+		GFF2334	0.33	-0.2
2,359,068	+		GFF2334	0.34	+0.5
2,359,068	+		GFF2334	0.34	+0.5
2,359,076	-		GFF2334	0.36	-2.7
2,359,076	-		GFF2334	0.36	-0.5
2,359,083	-		GFF2334	0.38	+0.5
2,359,116	+		GFF2334	0.46	-0.5
2,359,123	+		GFF2334	0.48	+0.7
2,359,123	+		GFF2334	0.48	-0.9
2,359,124	-		GFF2334	0.48	+0.3
2,359,150	+		GFF2334	0.55	-0.3
2,359,150	+		GFF2334	0.55	-1.6
2,359,165	+		GFF2334	0.59	+0.9
2,359,165	+		GFF2334	0.59	-1.5
2,359,169	+		GFF2334	0.60	+0.1
2,359,169	+		GFF2334	0.60	+0.2
2,359,173	-		GFF2334	0.61	+0.5
2,359,173	-		GFF2334	0.61	+0.4
2,359,177	+		GFF2334	0.62	+0.2
2,359,177	-		GFF2334	0.62	+0.1
2,359,177	-		GFF2334	0.62	-2.0
2,359,177	-		GFF2334	0.62	+0.7
2,359,179	+		GFF2334	0.62	-0.5
2,359,185	-		GFF2334	0.64	-0.9
2,359,189	-		GFF2334	0.65	+0.4
2,359,208	+		GFF2334	0.70	-1.1
2,359,226	-		GFF2334	0.74	-1.0
2,359,232	+		GFF2334	0.76	+1.4
2,359,251	-		GFF2334	0.81	-1.2
2,359,263	-		GFF2334	0.84	-0.3
2,359,284	+		GFF2334	0.89	-0.2
2,359,284	-		GFF2334	0.89	+0.7
2,359,311	+				-0.4
2,359,319	-				-0.2
2,359,327	-				-0.9
2,359,329	+				+0.3
2,359,329	+				-1.6
2,359,337	-				+0.7
2,359,337	-				-0.1
2,359,337	-				-0.4
2,359,337	-				+1.0
2,359,341	+				+0.6
2,359,342	-				-0.5
2,359,350	+				-0.1
2,359,404	+				+0.2
2,359,411	+				-1.5
2,359,411	+				+0.7
2,359,411	+				+1.0
2,359,411	+				-0.4
2,359,417	-				-0.0
2,359,417	-				+0.5
2,359,419	-				+0.6
2,359,423	-				+0.4
2,359,479	-		GFF2335	0.15	+0.4
2,359,499	+		GFF2335	0.17	-2.4
2,359,519	+		GFF2335	0.19	-1.3
2,359,524	+		GFF2335	0.20	+0.8
2,359,529	+		GFF2335	0.20	-0.2
2,359,533	+		GFF2335	0.20	+0.4
2,359,533	+		GFF2335	0.20	-1.7
2,359,537	-		GFF2335	0.21	-1.0
2,359,537	-		GFF2335	0.21	-1.3
2,359,541	+		GFF2335	0.21	+0.2
2,359,549	-		GFF2335	0.22	-0.1
2,359,556	+		GFF2335	0.23	-1.9
2,359,561	+		GFF2335	0.23	-1.5
2,359,564	-		GFF2335	0.23	-1.7
2,359,564	-		GFF2335	0.23	+0.2
2,359,564	-		GFF2335	0.23	+1.0
2,359,589	-		GFF2335	0.26	+0.1
2,359,597	-		GFF2335	0.27	-0.3
2,359,615	+		GFF2335	0.28	+1.1
2,359,640	-		GFF2335	0.31	+1.2
2,359,669	-		GFF2335	0.34	-0.3
2,359,674	-		GFF2335	0.34	+0.4
2,359,674	-		GFF2335	0.34	+2.2
2,359,675	+		GFF2335	0.34	-2.7
2,359,727	+		GFF2335	0.39	+0.5
2,359,727	+		GFF2335	0.39	-0.6
2,359,732	+		GFF2335	0.40	-0.2
2,359,735	-		GFF2335	0.40	-0.7
2,359,740	-		GFF2335	0.41	+0.0
2,359,743	+		GFF2335	0.41	+0.2
2,359,751	-		GFF2335	0.42	+0.7
2,359,757	-		GFF2335	0.42	-0.1
2,359,772	+		GFF2335	0.44	+0.3
2,359,772	+		GFF2335	0.44	-0.2
2,359,777	-		GFF2335	0.44	+0.2
2,359,780	-		GFF2335	0.44	+1.1
2,359,780	-		GFF2335	0.44	+0.4
2,359,780	-		GFF2335	0.44	+0.4
2,359,780	-		GFF2335	0.44	-0.9
2,359,809	+		GFF2335	0.47	-1.1
2,359,877	+		GFF2335	0.54	-0.3
2,359,885	-		GFF2335	0.55	+0.2
2,359,885	-		GFF2335	0.55	-1.7
2,359,885	-		GFF2335	0.55	+1.0
2,359,892	-		GFF2335	0.55	-0.6
2,359,907	+		GFF2335	0.57	+0.9
2,359,970	+		GFF2335	0.63	-0.8
2,359,978	-		GFF2335	0.64	-0.8
2,360,014	-		GFF2335	0.67	+0.2
2,360,014	-		GFF2335	0.67	-1.5
2,360,033	+		GFF2335	0.69	-1.9
2,360,038	+		GFF2335	0.69	+1.2
2,360,041	-		GFF2335	0.70	-0.3
2,360,046	-		GFF2335	0.70	-0.5
2,360,046	-		GFF2335	0.70	-0.1
2,360,046	-		GFF2335	0.70	+1.1
2,360,051	+		GFF2335	0.71	+0.1
2,360,080	+		GFF2335	0.74	-0.5
2,360,080	+		GFF2335	0.74	+0.2
2,360,080	+		GFF2335	0.74	-1.5
2,360,082	+		GFF2335	0.74	-1.3
2,360,088	-		GFF2335	0.74	+0.9
2,360,088	-		GFF2335	0.74	+1.6
2,360,088	-		GFF2335	0.74	-0.8
2,360,192	-		GFF2335	0.84	+0.4
2,360,192	-		GFF2335	0.84	+1.0
2,360,195	-		GFF2335	0.85	-1.1
2,360,210	+		GFF2335	0.86	-0.2
2,360,210	+		GFF2335	0.86	-0.8
2,360,214	+		GFF2335	0.87	-1.0
2,360,218	-		GFF2335	0.87	+0.0
2,360,243	-		GFF2335	0.89	-1.5
2,360,247	-		GFF2335	0.90	+0.8
2,360,249	+				-1.2
2,360,249	+				+0.9
2,360,257	-				-0.5
2,360,282	+				+0.5
2,360,282	+				-0.7
2,360,290	-				-0.8
2,360,332	+				-1.1
2,360,332	+				+0.2
2,360,337	+				+1.1
2,360,340	-				+0.4
2,360,340	-				-0.6
2,360,340	-				-2.1
2,360,348	-				+1.4
2,360,350	-				+0.2
2,360,353	+				+0.1
2,360,353	+				+0.5
2,360,353	+				-1.0
2,360,353	+				+0.1
2,360,353	+				-1.3
2,360,358	+				-1.2
2,360,361	-				-1.2
2,360,361	-				-0.4
2,360,361	-				-1.4
2,360,366	-				-0.1
2,360,448	+				+1.7
2,360,448	+				+1.1
2,360,448	+				-0.2
2,360,448	+				-0.8
2,360,450	-				-1.3
2,360,456	-				+1.1
2,360,490	-		GFF2336	0.18	-1.9
2,360,525	-		GFF2336	0.28	-0.1
2,360,555	+		GFF2336	0.37	+0.6
2,360,555	+		GFF2336	0.37	-0.5
2,360,562	+		GFF2336	0.39	-1.7
2,360,562	+		GFF2336	0.39	+0.3
2,360,562	+		GFF2336	0.39	+0.1
2,360,562	+		GFF2336	0.39	-0.1
2,360,562	+		GFF2336	0.39	-0.8
2,360,570	-		GFF2336	0.42	-0.2
2,360,570	-		GFF2336	0.42	-0.3
2,360,570	-		GFF2336	0.42	+0.4
2,360,601	+		GFF2336	0.51	-1.2
2,360,609	-		GFF2336	0.53	-0.8
2,360,616	+		GFF2336	0.55	+0.6
2,360,635	+		GFF2336	0.61	-1.3
2,360,666	+		GFF2336	0.70	-0.8
2,360,706	+		GFF2336	0.82	+0.0
2,360,706	+		GFF2336	0.82	+0.1
2,360,711	+		GFF2336	0.83	-1.2
2,360,719	-		GFF2336	0.86	+0.6
2,360,721	+		GFF2336	0.86	+0.8
2,360,724	+		GFF2336	0.87	-1.0
2,360,724	-		GFF2336	0.87	-0.4
2,360,729	-		GFF2336	0.88	+0.5
2,360,736	-				+1.1
2,360,754	+				+0.1
2,360,759	+				-0.9
2,360,762	-				+0.9
2,360,762	-				-1.5
2,360,762	-				+0.2
2,360,764	+				-0.5
2,360,767	-				-1.2
2,360,840	+				+0.1
2,360,866	-				-1.3
2,360,881	+				+0.1
2,360,886	+				-1.3
2,360,886	+				+0.0
2,360,889	-				-0.6
2,360,889	-				+0.7
2,360,894	-				-0.5
2,360,894	-				+0.3