Strain Fitness in Sphingobium sp. HT1-2 around GFF2331

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,355,647	+				-0.4
2,355,647	+				-0.8
2,355,647	+				+0.6
2,355,652	+				-1.0
2,355,652	+				-0.9
2,355,652	+				-1.2
2,355,652	+				+0.7
2,355,652	+				+1.0
2,355,652	+				+0.4
2,355,652	+				-1.7
2,355,652	+				-0.6
2,355,655	-				-0.4
2,355,660	-				-0.7
2,355,660	-				-1.7
2,355,660	-				+0.2
2,355,672	+				+0.2
2,355,672	+				-1.2
2,355,682	+				-0.3
2,355,718	+				-2.1
2,355,751	+				+0.4
2,355,802	+				-1.1
2,355,809	-				+1.6
2,355,831	+				-0.3
2,355,839	-				-0.9
2,355,855	+				-1.8
2,355,855	+				+0.4
2,355,883	-				-0.3
2,355,886	-				-0.4
2,356,031	+				+0.1
2,356,085	-				-0.1
2,356,140	+				+0.6
2,356,140	+				+0.5
2,356,141	+				-0.9
2,356,148	+				+0.5
2,356,148	+				+0.1
2,356,148	-				-1.2
2,356,150	+				+0.6
2,356,150	+				-0.2
2,356,151	-				-2.2
2,356,156	-				+0.1
2,356,160	+				+0.4
2,356,160	+				-0.2
2,356,160	+				+0.3
2,356,160	+				+0.1
2,356,160	+				-1.8
2,356,160	+				-0.6
2,356,168	-				-0.9
2,356,186	+				+0.6
2,356,189	-				-0.4
2,356,205	+				-0.9
2,356,205	+				-1.1
2,356,205	+				+0.5
2,356,213	-				-2.0
2,356,238	+		GFF2330	0.12	+0.2
2,356,238	+		GFF2330	0.12	-1.0
2,356,240	+		GFF2330	0.13	+1.0
2,356,253	-		GFF2330	0.23	+0.4
2,356,258	-		GFF2330	0.27	+0.1
2,356,277	+		GFF2330	0.42	-0.2
2,356,308	+		GFF2330	0.66	-1.9
2,356,309	+		GFF2330	0.67	-2.8
2,356,318	+		GFF2330	0.74	-1.6
2,356,318	+		GFF2330	0.74	-1.2
2,356,318	+		GFF2330	0.74	-0.4
2,356,318	+		GFF2330	0.74	+0.1
2,356,326	-		GFF2330	0.80	+0.4
2,356,326	-		GFF2330	0.80	-0.3
2,356,326	-		GFF2330	0.80	-0.3
2,356,336	+		GFF2330	0.88	-1.9
2,356,336	+		GFF2330	0.88	+0.5
2,356,344	-				-0.5
2,356,378	-				-0.2
2,356,378	-				+0.1
2,356,464	+				-0.6
2,356,494	+				-0.0
2,356,495	+				-1.2
2,356,503	-				-1.2
2,356,552	+				+0.5
2,356,580	+				-0.3
2,356,580	+				+1.5
2,356,580	+				+0.1
2,356,584	+				+0.2
2,356,588	-				-0.7
2,356,588	-				-0.7
2,356,588	-				+0.4
2,356,601	+				-1.4
2,356,601	+				+0.1
2,356,601	+				-0.5
2,356,609	-				+0.6
2,356,615	-				+1.0
2,356,625	-				+0.1
2,356,634	+				-0.6
2,356,640	-				+0.4
2,356,640	-				+0.0
2,356,641	+				-2.3
2,356,642	-				+0.6
2,356,642	-				+0.1
2,356,646	+				+0.1
2,356,646	+				-1.6
2,356,646	+				+1.5
2,356,649	-				-1.5
2,356,649	-				-0.6
2,356,654	-				+0.8
2,356,684	+				-1.0
2,356,684	+				-0.6
2,356,684	+				+0.5
2,356,786	+		GFF2331	0.32	+1.6
2,356,791	-		GFF2331	0.34	-0.6
2,356,794	-		GFF2331	0.34	-1.1
2,356,816	+		GFF2331	0.39	-0.5
2,356,816	+		GFF2331	0.39	+0.5
2,356,816	+		GFF2331	0.39	-1.9
2,356,816	+		GFF2331	0.39	-1.5
2,356,824	-		GFF2331	0.41	-0.9
2,356,824	-		GFF2331	0.41	+0.0
2,356,824	-		GFF2331	0.41	-0.8
2,356,824	-		GFF2331	0.41	-1.3
2,356,842	+		GFF2331	0.45	+0.4
2,356,849	+		GFF2331	0.47	-0.3
2,356,898	-		GFF2331	0.58	+0.8
2,356,926	+		GFF2331	0.64	+0.5
2,356,926	+		GFF2331	0.64	-0.8
2,356,926	+		GFF2331	0.64	-0.3
2,356,934	-		GFF2331	0.66	-0.4
2,356,934	-		GFF2331	0.66	-0.1
2,356,934	-		GFF2331	0.66	-0.4
2,356,946	+		GFF2331	0.69	+1.1
2,356,946	+		GFF2331	0.69	-0.6
2,356,946	+		GFF2331	0.69	+1.5
2,356,946	+		GFF2331	0.69	-0.9
2,356,946	+		GFF2331	0.69	+0.4
2,356,946	+		GFF2331	0.69	+0.6
2,356,946	+		GFF2331	0.69	-0.4
2,356,954	-		GFF2331	0.71	+0.4
2,356,954	-		GFF2331	0.71	+0.6
2,356,954	-		GFF2331	0.71	-1.6
2,356,954	-		GFF2331	0.71	+0.6
2,356,954	-		GFF2331	0.71	-0.1
2,356,961	+		GFF2331	0.72	-2.2
2,356,965	-		GFF2331	0.73	-1.6
2,356,972	+		GFF2331	0.75	-0.1
2,356,980	-		GFF2331	0.77	-0.1
2,356,983	+		GFF2331	0.77	+0.4
2,356,984	-		GFF2331	0.78	-2.2
2,356,984	-		GFF2331	0.78	-0.7
2,356,993	+		GFF2331	0.80	-0.8
2,356,993	+		GFF2331	0.80	+0.9
2,356,993	+		GFF2331	0.80	-0.2
2,357,001	-		GFF2331	0.82	-0.4
2,357,001	-		GFF2331	0.82	+0.5
2,357,001	-		GFF2331	0.82	-0.9
2,357,001	-		GFF2331	0.82	+1.0
2,357,001	-		GFF2331	0.82	+1.5
2,357,001	-		GFF2331	0.82	-0.9
2,357,001	-		GFF2331	0.82	-0.1
2,357,001	-		GFF2331	0.82	+0.4
2,357,001	-		GFF2331	0.82	-0.4
2,357,003	+		GFF2331	0.82	-0.9
2,357,003	+		GFF2331	0.82	+0.5
2,357,016	-		GFF2331	0.85	-0.6
2,357,016	-		GFF2331	0.85	+0.6
2,357,016	-		GFF2331	0.85	-0.5
2,357,050	+				-0.3
2,357,055	-				-1.3
2,357,055	-				-1.5
2,357,055	-				-0.6
2,357,058	+				-0.4
2,357,071	+				-0.1
2,357,071	-				+0.4
2,357,098	+				-0.7
2,357,098	+				-0.1
2,357,100	+				-0.3
2,357,106	-				-0.2
2,357,108	+				-0.1
2,357,113	+				+0.4
2,357,121	-				+1.1
2,357,134	+				+1.2
2,357,141	+				+0.1
2,357,142	-				-0.6
2,357,152	+				-0.9
2,357,152	+				-1.5
2,357,152	+				+1.2
2,357,152	+				+1.1
2,357,160	-				+0.0
2,357,160	-				-1.0
2,357,160	-				-0.2
2,357,160	-				-0.4
2,357,160	-				-0.1
2,357,160	-				+0.0
2,357,160	-				-0.8
2,357,160	-				-0.2
2,357,160	-				-2.2
2,357,168	+				+1.3
2,357,174	+				-2.1
2,357,176	-				-1.4
2,357,179	+				-0.8
2,357,205	+				+0.2
2,357,205	+				-0.5
2,357,207	+				-0.2
2,357,207	+				+1.2
2,357,207	+				+1.3
2,357,207	+				-0.4
2,357,207	+				+1.8
2,357,207	+				-0.9
2,357,210	+				-0.7
2,357,213	-				-0.7
2,357,215	-				-0.3
2,357,215	-				-1.7
2,357,215	-				-0.6
2,357,215	-				+0.6
2,357,241	+				-0.0
2,357,249	-				+0.6
2,357,249	-				-2.0
2,357,249	-				-1.7
2,357,249	-				+1.4
2,357,249	-				-0.9
2,357,249	-				-1.1
2,357,264	+				+0.1
2,357,290	+		GFF2332	0.11	-0.9
2,357,298	-		GFF2332	0.12	+0.7
2,357,298	-		GFF2332	0.12	+0.8
2,357,299	-		GFF2332	0.12	+0.1
2,357,323	-		GFF2332	0.14	+0.3
2,357,326	+		GFF2332	0.15	-0.9
2,357,326	+		GFF2332	0.15	-1.5
2,357,331	+		GFF2332	0.15	+0.8
2,357,334	-		GFF2332	0.16	+0.4
2,357,348	+		GFF2332	0.17	-0.8
2,357,356	+		GFF2332	0.18	+0.2
2,357,396	-		GFF2332	0.23	+0.7
2,357,409	+		GFF2332	0.24	-0.4
2,357,417	-		GFF2332	0.25	+0.4
2,357,446	+		GFF2332	0.29	+0.0
2,357,462	-		GFF2332	0.30	+0.2
2,357,478	-		GFF2332	0.32	-0.8
2,357,479	+		GFF2332	0.32	+0.5
2,357,483	-		GFF2332	0.33	-0.1
2,357,510	+		GFF2332	0.36	-1.4
2,357,554	+		GFF2332	0.41	+0.1
2,357,554	+		GFF2332	0.41	-0.6
2,357,554	+		GFF2332	0.41	-0.3
2,357,562	-		GFF2332	0.42	+0.1
2,357,562	-		GFF2332	0.42	-1.0
2,357,572	-		GFF2332	0.43	+0.0
2,357,585	+		GFF2332	0.45	+0.1
2,357,585	-		GFF2332	0.45	+1.3
2,357,615	+		GFF2332	0.48	+0.8
2,357,620	+		GFF2332	0.49	-1.7
2,357,620	+		GFF2332	0.49	-1.4
2,357,628	-		GFF2332	0.50	-0.2
2,357,628	-		GFF2332	0.50	-1.6
2,357,633	-		GFF2332	0.50	-2.0
2,357,651	-		GFF2332	0.52	+0.1
2,357,664	+		GFF2332	0.54	-0.6
2,357,680	-		GFF2332	0.56	-0.1
2,357,732	-		GFF2332	0.61	+1.1
2,357,738	+		GFF2332	0.62	-1.1
2,357,742	-		GFF2332	0.63	-0.6
2,357,759	+		GFF2332	0.65	-0.6
2,357,789	-		GFF2332	0.68	-1.4
2,357,789	-		GFF2332	0.68	+0.1
2,357,835	-		GFF2332	0.73	-1.5
2,357,835	-		GFF2332	0.73	-0.2
2,357,840	-		GFF2332	0.74	-0.5
2,357,851	+		GFF2332	0.75	+0.2
2,357,856	+		GFF2332	0.76	+0.1
2,357,859	-		GFF2332	0.76	+1.6
2,357,859	-		GFF2332	0.76	+1.7
2,357,859	-		GFF2332	0.76	+1.1
2,357,859	-		GFF2332	0.76	-0.7
2,357,861	-		GFF2332	0.76	+0.8
2,357,870	-		GFF2332	0.77	-0.1
2,357,878	+		GFF2332	0.78	-0.7
2,357,897	+		GFF2332	0.80	-1.4
2,357,897	+		GFF2332	0.80	-0.8
2,357,897	+		GFF2332	0.80	-1.4
2,357,897	+		GFF2332	0.80	-0.9
2,357,897	+		GFF2332	0.80	-0.6
2,357,897	+		GFF2332	0.80	-0.5
2,357,900	+		GFF2332	0.81	-0.4
2,357,903	+		GFF2332	0.81	+0.9
2,357,904	-		GFF2332	0.81	-0.6
2,357,904	-		GFF2332	0.81	+0.0
2,357,905	-		GFF2332	0.81	+0.8
2,357,905	-		GFF2332	0.81	-1.9
2,357,905	-		GFF2332	0.81	+0.1
2,357,905	-		GFF2332	0.81	-1.1
2,357,905	-		GFF2332	0.81	+0.5
2,357,905	-		GFF2332	0.81	+0.2
2,357,908	+		GFF2332	0.82	+1.5
2,357,908	+		GFF2332	0.82	+2.0
2,357,908	+		GFF2332	0.82	-0.6
2,357,908	-		GFF2332	0.82	+0.6
2,357,911	-		GFF2332	0.82	+0.1
2,357,911	-		GFF2332	0.82	-0.1
2,357,913	+		GFF2332	0.82	-1.7
2,357,913	+		GFF2332	0.82	-0.5
2,357,916	-		GFF2332	0.83	+1.0
2,357,918	+		GFF2332	0.83	-0.8
2,357,921	-		GFF2332	0.83	-0.6
2,357,926	-		GFF2332	0.84	+0.4
2,357,926	-		GFF2332	0.84	-0.6
2,357,926	-		GFF2332	0.84	-2.2
2,357,926	-		GFF2332	0.84	-0.1
2,357,973	-		GFF2332	0.89	-1.2
2,358,009	-				-1.2
2,358,017	-				-0.9
2,358,037	+				+0.4
2,358,037	+				-0.1
2,358,037	+				-2.4
2,358,037	+				-0.7
2,358,042	+				-0.8
2,358,042	+				+0.2
2,358,042	+				+0.2
2,358,045	-				-0.4
2,358,045	-				+0.1
2,358,045	-				-0.0
2,358,045	-				+0.7
2,358,047	+				-1.9
2,358,047	+				-1.2
2,358,047	+				+1.0
2,358,047	+				-2.1
2,358,050	-				-0.2
2,358,050	-				+0.5
2,358,050	-				-1.4
2,358,050	-				-1.2
2,358,050	-				+0.5
2,358,051	+				-0.2
2,358,055	-				-0.8
2,358,059	-				+0.3
2,358,080	+				+0.4