Strain Fitness in Sphingobium sp. HT1-2 around GFF2303

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,328,179	-				+0.1
2,328,179	-				+0.5
2,328,179	-				+0.4
2,328,179	-				-1.8
2,328,221	-				+0.7
2,328,248	-				-0.1
2,328,258	+				+1.0
2,328,266	-				-0.5
2,328,280	+				-1.8
2,328,298	+				-0.2
2,328,305	-				+0.4
2,328,844	-				+0.1
2,328,986	-		GFF2302	0.36	-2.4
2,328,997	+		GFF2302	0.39	+0.5
2,328,997	+		GFF2302	0.39	+0.2
2,328,997	+		GFF2302	0.39	-0.8
2,329,005	-		GFF2302	0.42	+0.0
2,329,005	-		GFF2302	0.42	+1.1
2,329,005	-		GFF2302	0.42	+0.1
2,329,007	-		GFF2302	0.43	-0.1
2,329,057	+		GFF2302	0.58	+0.7
2,329,141	+		GFF2302	0.85	-1.3
2,329,148	-		GFF2302	0.87	+0.3
2,329,148	-		GFF2302	0.87	-0.3
2,329,153	-		GFF2302	0.89	-0.6
2,329,165	+				+0.1
2,329,165	+				-0.3
2,329,172	-				-1.8
2,329,172	-				+1.4
2,329,173	-				+0.2
2,329,173	-				-0.1
2,329,178	-				-0.5
2,329,183	-				-0.4
2,329,207	+				+1.5
2,329,213	+				-1.1
2,329,218	+				-1.0
2,329,221	+				+0.7
2,329,226	-				-0.3
2,329,228	-				+0.2
2,329,244	-				+0.5
2,329,247	+				-0.8
2,329,255	-				+0.7
2,329,368	-		GFF2303	0.18	+0.6
2,329,382	+		GFF2303	0.19	+0.7
2,329,384	+		GFF2303	0.19	-0.9
2,329,425	-		GFF2303	0.23	-0.4
2,329,452	+		GFF2303	0.25	-0.9
2,329,500	+		GFF2303	0.29	-0.1
2,329,500	+		GFF2303	0.29	+0.4
2,329,516	+		GFF2303	0.31	+0.6
2,329,518	+		GFF2303	0.31	+1.9
2,329,545	+		GFF2303	0.33	-0.1
2,329,545	+		GFF2303	0.33	+1.4
2,329,553	-		GFF2303	0.34	-0.7
2,329,553	-		GFF2303	0.34	-0.5
2,329,553	-		GFF2303	0.34	+0.5
2,329,580	+		GFF2303	0.36	-0.1
2,329,580	+		GFF2303	0.36	+0.9
2,329,583	-		GFF2303	0.37	+0.4
2,329,584	-		GFF2303	0.37	+0.9
2,329,585	+		GFF2303	0.37	-1.3
2,329,588	-		GFF2303	0.37	-0.6
2,329,590	+		GFF2303	0.37	+0.6
2,329,590	+		GFF2303	0.37	+0.4
2,329,590	+		GFF2303	0.37	-1.4
2,329,590	+		GFF2303	0.37	+1.4
2,329,590	+		GFF2303	0.37	-0.1
2,329,598	-		GFF2303	0.38	-1.8
2,329,598	-		GFF2303	0.38	+0.7
2,329,622	-		GFF2303	0.40	-0.0
2,329,626	-		GFF2303	0.40	-0.5
2,329,653	+		GFF2303	0.43	+0.1
2,329,654	-		GFF2303	0.43	-0.4
2,329,663	+		GFF2303	0.43	-1.0
2,329,671	-		GFF2303	0.44	-0.1
2,329,671	-		GFF2303	0.44	+1.2
2,329,671	-		GFF2303	0.44	-0.4
2,329,716	-		GFF2303	0.48	+1.2
2,329,745	+		GFF2303	0.51	+0.6
2,329,745	+		GFF2303	0.51	+0.8
2,329,753	-		GFF2303	0.51	-1.6
2,329,762	-		GFF2303	0.52	+1.0
2,329,772	-		GFF2303	0.53	-0.5
2,329,784	-		GFF2303	0.54	-2.6
2,329,793	-		GFF2303	0.55	-1.2
2,329,833	+		GFF2303	0.58	+0.9
2,329,853	+		GFF2303	0.60	-1.7
2,329,853	+		GFF2303	0.60	+0.3
2,329,897	-		GFF2303	0.64	-0.0
2,329,920	+		GFF2303	0.66	-0.7
2,329,935	-		GFF2303	0.67	-0.8
2,329,937	+		GFF2303	0.67	+0.8
2,330,012	-		GFF2303	0.74	+1.6
2,330,013	-		GFF2303	0.74	-0.3
2,330,021	+		GFF2303	0.75	-0.6
2,330,021	+		GFF2303	0.75	-0.3
2,330,022	-		GFF2303	0.75	-1.8
2,330,029	-		GFF2303	0.75	+0.6
2,330,029	-		GFF2303	0.75	+0.7
2,330,029	-		GFF2303	0.75	-1.0
2,330,054	+		GFF2303	0.77	-2.6
2,330,079	+		GFF2303	0.80	+0.1
2,330,079	+		GFF2303	0.80	+1.1
2,330,079	+		GFF2303	0.80	-0.1
2,330,079	+		GFF2303	0.80	+0.1
2,330,087	-		GFF2303	0.80	+0.1
2,330,087	-		GFF2303	0.80	-1.4
2,330,087	-		GFF2303	0.80	+1.4
2,330,112	-		GFF2303	0.82	+0.4
2,330,112	-		GFF2303	0.82	+0.3
2,330,140	+		GFF2303	0.85	-2.0
2,330,148	-		GFF2303	0.86	+1.5
2,330,148	-		GFF2303	0.86	-1.2
2,330,152	+		GFF2303	0.86	+0.7
2,330,152	+		GFF2303	0.86	-1.9
2,330,162	+		GFF2303	0.87	-1.8
2,330,170	-		GFF2303	0.88	+0.3
2,330,228	-				-2.7
2,330,230	+				+0.6
2,330,243	+				+0.9
2,330,243	+				+0.5
2,330,243	+				-0.1
2,330,243	+				-0.9
2,330,261	-				+1.0
2,330,274	+				+0.5
2,330,277	-				-2.3
2,330,282	-				+1.4
2,330,282	-				+0.1
2,330,282	-				-0.4
2,330,282	-				-1.6
2,330,282	-				-2.2
2,330,347	+				-0.9
2,330,358	+				-0.9
2,330,377	+				+0.8
2,330,379	+				+0.8
2,330,379	+				-0.9
2,330,379	+				-0.9
2,330,385	-				-0.8
2,330,385	-				-0.7
2,330,385	-				-2.0
2,330,385	-				+0.5
2,330,385	-				+0.0
2,330,387	-				+1.3
2,330,413	-		GFF2304	0.11	-0.1
2,330,532	-		GFF2304	0.33	-0.1
2,330,537	-		GFF2304	0.34	+1.2
2,330,537	-		GFF2304	0.34	+1.2
2,330,565	+		GFF2304	0.39	-0.8
2,330,585	-		GFF2304	0.43	+0.4
2,330,656	-		GFF2304	0.56	+0.1
2,330,663	+		GFF2304	0.58	+1.5
2,330,665	-		GFF2304	0.58	-0.2
2,330,665	-		GFF2304	0.58	+1.1
2,330,665	-		GFF2304	0.58	+0.2
2,330,669	+		GFF2304	0.59	-1.1
2,330,675	+		GFF2304	0.60	+0.5
2,330,675	+		GFF2304	0.60	-1.1
2,330,722	+		GFF2304	0.69	+0.1
2,330,728	-		GFF2304	0.70	+0.8
2,330,730	+		GFF2304	0.70	-0.1
2,330,730	+		GFF2304	0.70	+0.9
2,330,738	-		GFF2304	0.72	-2.7
2,330,747	+		GFF2304	0.73	+0.4
2,330,765	+		GFF2304	0.77	-0.7
2,330,765	+		GFF2304	0.77	+0.1
2,330,791	+		GFF2304	0.81	-1.2
2,330,791	+		GFF2304	0.81	+0.1
2,330,791	+		GFF2304	0.81	+0.0
2,330,791	+		GFF2304	0.81	+1.6
2,330,791	+		GFF2304	0.81	+1.2
2,330,796	+		GFF2304	0.82	+0.2
2,330,797	-		GFF2304	0.82	+0.7
2,330,799	-		GFF2304	0.83	-0.5
2,330,799	-		GFF2304	0.83	+1.1
2,330,799	-		GFF2304	0.83	+0.9
2,330,799	-		GFF2304	0.83	+0.7
2,330,799	-		GFF2304	0.83	+0.9
2,330,799	-		GFF2304	0.83	+0.8
2,330,826	+		GFF2304	0.88	-1.1
2,330,826	+		GFF2304	0.88	-1.9
2,330,828	+		GFF2304	0.88	+0.5
2,330,834	+		GFF2304	0.89	-0.1
2,330,834	+		GFF2304	0.89	+1.1
2,330,839	+				+0.5
2,330,839	+				-0.2
2,330,842	-				+0.5
2,330,842	-				+0.3
2,330,847	-				-0.4
2,330,847	-				+1.1
2,330,867	-				-0.6
2,330,898	+				-2.8
2,330,926	+				-1.0
2,330,970	-		GFF2305	0.26	-1.1
2,331,032	-		GFF2305	0.81	-1.6
2,331,034	+		GFF2305	0.82	-0.2
2,331,034	+		GFF2305	0.82	+1.2
2,331,034	+		GFF2305	0.82	+0.1
2,331,042	-				+0.5
2,331,083	+				-0.6
2,331,109	+				-0.1
2,331,139	+				-0.3
2,331,147	-				+1.5
2,331,147	-				-0.6
2,331,147	-				-0.1
2,331,147	-				+1.5
2,331,147	-				+1.0
2,331,156	+				+0.2
2,331,167	+		GFF2306	0.13	+0.4
2,331,167	+		GFF2306	0.13	+0.7
2,331,172	+		GFF2306	0.16	-0.2
2,331,172	+		GFF2306	0.16	-0.6
2,331,177	+		GFF2306	0.18	-0.7
2,331,177	+		GFF2306	0.18	-0.1
2,331,180	-		GFF2306	0.20	+0.5
2,331,185	-		GFF2306	0.22	-1.0
2,331,187	+		GFF2306	0.23	+1.0
2,331,187	+		GFF2306	0.23	-0.8
2,331,187	+		GFF2306	0.23	-0.2
2,331,187	+		GFF2306	0.23	+0.4
2,331,187	+		GFF2306	0.23	+0.1
2,331,195	-		GFF2306	0.27	-0.3
2,331,195	-		GFF2306	0.27	+0.7
2,331,195	-		GFF2306	0.27	-0.0
2,331,195	-		GFF2306	0.27	+0.4
2,331,197	+		GFF2306	0.28	-0.9
2,331,230	-		GFF2306	0.45	+0.2
2,331,244	+		GFF2306	0.52	-0.2
2,331,264	+		GFF2306	0.62	-0.3