Strain Fitness in Sphingobium sp. HT1-2 around GFF2254

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,282,618	-				+0.6
2,282,627	+				-0.5
2,282,657	+				-1.3
2,282,683	+				-1.6
2,282,692	+				+0.2
2,282,693	-				+0.2
2,282,693	-				+0.3
2,282,700	-				+0.1
2,282,726	-		GFF2252	0.15	-0.8
2,282,726	-		GFF2252	0.15	-0.1
2,282,758	+		GFF2252	0.35	-0.4
2,282,758	+		GFF2252	0.35	-1.6
2,282,758	+		GFF2252	0.35	-0.0
2,282,758	+		GFF2252	0.35	-1.1
2,282,766	-		GFF2252	0.40	+0.5
2,282,766	-		GFF2252	0.40	+0.9
2,282,785	+		GFF2252	0.52	+0.5
2,282,816	-		GFF2252	0.72	+1.0
2,282,829	-		GFF2252	0.80	-2.6
2,282,843	+		GFF2252	0.89	-0.7
2,282,855	+				+0.2
2,282,855	+				+1.1
2,282,855	+				+0.3
2,282,855	+				-0.4
2,282,863	-				+0.0
2,282,863	-				-1.0
2,282,863	-				+0.1
2,282,894	-				+0.7
2,282,919	+				+0.2
2,282,919	+				+0.2
2,282,927	-				+1.3
2,282,930	-				+0.2
2,282,930	-				-0.8
2,282,942	+				-0.3
2,282,971	+				-1.3
2,282,978	+				-0.1
2,282,979	+				-0.2
2,282,987	-				-1.1
2,282,987	-				-0.3
2,283,007	+				-0.8
2,283,007	+				-0.2
2,283,015	-				-0.5
2,283,018	+				+1.5
2,283,021	-				-1.2
2,283,021	-				+0.7
2,283,023	+				-1.6
2,283,023	+				-1.0
2,283,031	-				-0.5
2,283,031	-				-1.4
2,283,031	-				+0.4
2,283,033	+				+0.5
2,283,033	+				-2.2
2,283,033	+				-0.5
2,283,033	+				-0.8
2,283,040	+				-0.0
2,283,048	-				+0.5
2,283,048	-				-2.2
2,283,064	+				-0.9
2,283,088	+				-0.9
2,283,096	-				-1.1
2,283,096	-				+0.3
2,283,096	-				+0.0
2,283,096	-				+0.1
2,283,140	-				+0.3
2,283,193	+				-2.5
2,283,199	-				+0.0
2,283,203	-				+0.2
2,283,226	+		GFF2253	0.16	-0.3
2,283,234	-		GFF2253	0.18	-0.3
2,283,237	+		GFF2253	0.19	-1.2
2,283,285	+		GFF2253	0.32	-1.5
2,283,314	-		GFF2253	0.40	+0.2
2,283,314	-		GFF2253	0.40	+1.1
2,283,315	+		GFF2253	0.40	+0.3
2,283,316	+		GFF2253	0.40	-0.7
2,283,316	+		GFF2253	0.40	-1.4
2,283,316	+		GFF2253	0.40	-0.6
2,283,324	-		GFF2253	0.42	-1.0
2,283,324	-		GFF2253	0.42	-0.7
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-1.4
2,283,326	+		GFF2253	0.43	+0.9
2,283,326	+		GFF2253	0.43	-1.7
2,283,326	+		GFF2253	0.43	-0.2
2,283,326	+		GFF2253	0.43	-1.3
2,283,326	+		GFF2253	0.43	-0.0
2,283,326	+		GFF2253	0.43	-2.3
2,283,326	+		GFF2253	0.43	-0.1
2,283,326	+		GFF2253	0.43	+0.2
2,283,326	+		GFF2253	0.43	-0.1
2,283,326	+		GFF2253	0.43	+0.2
2,283,326	+		GFF2253	0.43	+0.1
2,283,326	+		GFF2253	0.43	-0.7
2,283,326	+		GFF2253	0.43	+0.1
2,283,326	+		GFF2253	0.43	-1.6
2,283,326	+		GFF2253	0.43	-1.0
2,283,326	+		GFF2253	0.43	-1.3
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-0.8
2,283,326	+		GFF2253	0.43	-0.5
2,283,326	+		GFF2253	0.43	-1.2
2,283,326	+		GFF2253	0.43	+0.4
2,283,326	+		GFF2253	0.43	-0.8
2,283,326	+		GFF2253	0.43	-1.4
2,283,326	+		GFF2253	0.43	-0.6
2,283,326	+		GFF2253	0.43	-0.3
2,283,326	+		GFF2253	0.43	-2.6
2,283,326	+		GFF2253	0.43	-1.3
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-0.3
2,283,326	+		GFF2253	0.43	-2.1
2,283,326	+		GFF2253	0.43	-0.2
2,283,326	+		GFF2253	0.43	+1.4
2,283,326	+		GFF2253	0.43	-0.5
2,283,326	+		GFF2253	0.43	-1.5
2,283,326	+		GFF2253	0.43	-0.5
2,283,326	+		GFF2253	0.43	-1.2
2,283,334	-		GFF2253	0.45	-1.8
2,283,334	-		GFF2253	0.45	+0.9
2,283,334	-		GFF2253	0.45	-0.0
2,283,334	-		GFF2253	0.45	-0.5
2,283,334	-		GFF2253	0.45	-1.2
2,283,334	-		GFF2253	0.45	-1.0
2,283,334	-		GFF2253	0.45	-0.7
2,283,334	-		GFF2253	0.45	+1.4
2,283,334	-		GFF2253	0.45	-0.8
2,283,334	-		GFF2253	0.45	-0.6
2,283,334	-		GFF2253	0.45	+0.4
2,283,334	-		GFF2253	0.45	+1.0
2,283,334	-		GFF2253	0.45	+0.4
2,283,334	-		GFF2253	0.45	+0.4
2,283,334	-		GFF2253	0.45	-0.8
2,283,334	-		GFF2253	0.45	+0.7
2,283,334	-		GFF2253	0.45	-1.5
2,283,334	-		GFF2253	0.45	+0.6
2,283,334	-		GFF2253	0.45	-0.4
2,283,334	-		GFF2253	0.45	-0.1
2,283,334	-		GFF2253	0.45	-1.5
2,283,334	-		GFF2253	0.45	-0.8
2,283,334	-		GFF2253	0.45	-0.1
2,283,334	-		GFF2253	0.45	-0.1
2,283,339	-		GFF2253	0.46	-0.4
2,283,341	+		GFF2253	0.47	-0.7
2,283,341	+		GFF2253	0.47	-0.9
2,283,341	+		GFF2253	0.47	+0.1
2,283,349	-		GFF2253	0.49	+0.1
2,283,349	-		GFF2253	0.49	-0.3
2,283,363	-		GFF2253	0.53	-0.4
2,283,410	+		GFF2253	0.66	-1.9
2,283,410	-		GFF2253	0.66	+0.7
2,283,410	-		GFF2253	0.66	-1.3
2,283,419	+		GFF2253	0.68	+1.1
2,283,424	+		GFF2253	0.69	-1.6
2,283,432	-		GFF2253	0.72	-2.0
2,283,434	+		GFF2253	0.72	-0.2
2,283,437	-		GFF2253	0.73	+1.2
2,283,462	+		GFF2253	0.80	-0.3
2,283,488	+		GFF2253	0.87	-1.4
2,283,488	+		GFF2253	0.87	-0.5
2,283,488	+		GFF2253	0.87	+0.6
2,283,488	-		GFF2253	0.87	+0.2
2,283,496	-		GFF2253	0.89	+0.5
2,283,496	-		GFF2253	0.89	-2.6
2,283,497	-		GFF2253	0.89	+0.2
2,283,558	-				-0.1
2,283,567	+				+0.7
2,283,569	+				-1.0
2,283,574	+				-0.6
2,283,582	-				-0.2
2,283,601	-				+0.1
2,283,601	-				-0.4
2,283,601	-				-1.0
2,283,610	+				-0.2
2,283,610	+				+0.3
2,283,618	+				-2.6
2,283,618	-				-0.2
2,283,618	-				+0.5
2,283,618	-				+0.2
2,283,618	-				+0.7
2,283,618	-				-0.4
2,283,641	+				-1.6
2,283,654	+				-1.9
2,283,698	-		GFF2254	0.20	-2.9
2,283,714	+		GFF2254	0.23	-2.0
2,283,717	-		GFF2254	0.24	-2.0
2,283,726	+		GFF2254	0.26	-2.4
2,283,739	+		GFF2254	0.29	-2.0
2,283,758	-		GFF2254	0.34	-1.4
2,283,768	-		GFF2254	0.36	-2.4
2,283,837	+		GFF2254	0.52	-1.5
2,283,841	-		GFF2254	0.53	-0.7
2,283,850	+		GFF2254	0.55	-0.5
2,283,852	+		GFF2254	0.55	-1.2
2,283,858	+		GFF2254	0.57	-1.3
2,283,860	-		GFF2254	0.57	-1.6
2,283,866	-		GFF2254	0.59	-2.0
2,283,876	-		GFF2254	0.61	-2.8
2,283,924	+		GFF2254	0.72	-1.4
2,283,924	+		GFF2254	0.72	+0.3
2,283,932	-		GFF2254	0.74	-0.1
2,283,934	+		GFF2254	0.74	-2.4
2,283,973	+		GFF2254	0.83	-2.5
2,284,017	-				-1.7
2,284,046	-				-0.7
2,284,046	-				-1.4
2,284,046	-				-1.5
2,284,147	+				-1.7
2,284,149	+				-1.3
2,284,155	-				-1.7
2,284,155	-				+0.1
2,284,169	+				-0.2
2,284,190	+				-2.9
2,284,201	+				-0.8
2,284,201	+				-0.7
2,284,201	+				-1.8
2,284,202	+				-1.4
2,284,202	+				+0.9
2,284,202	+				-0.6
2,284,202	+				-0.8
2,284,202	+				+0.8
2,284,202	+				+1.3
2,284,202	+				-0.0
2,284,202	+				-2.3
2,284,202	+				+0.3
2,284,202	+				-0.1
2,284,202	+				+0.3
2,284,203	-				+0.8
2,284,210	-				-0.4
2,284,210	-				-1.3
2,284,210	-				+0.4
2,284,210	-				-0.8
2,284,210	-				+0.5
2,284,210	-				-1.3
2,284,210	-				-1.2
2,284,210	-				+0.3
2,284,210	-				+1.6
2,284,210	-				-0.1
2,284,210	-				-1.3
2,284,210	-				-0.6
2,284,210	-				+0.9
2,284,210	-				-1.3
2,284,210	-				-0.7
2,284,232	-				-2.7
2,284,257	-				-0.6
2,284,268	+				-0.8
2,284,276	-				+0.2
2,284,290	+				-2.3
2,284,291	-				-0.9
2,284,292	-				+0.1
2,284,292	-				-0.6
2,284,298	-				+0.4
2,284,311	+				+0.2
2,284,319	-				+1.2
2,284,380	+				+0.3
2,284,380	+				+1.0
2,284,382	-				+0.2
2,284,388	-				-0.2
2,284,395	-				+1.1
2,284,409	+				+0.1
2,284,409	+				-0.1
2,284,409	+				+0.4
2,284,412	+				-0.5
2,284,417	-				-3.4
2,284,417	-				-0.9
2,284,417	-				+0.1
2,284,417	-				+0.2
2,284,417	-				-1.1
2,284,420	-				+0.1
2,284,430	+				+0.3
2,284,439	-				-3.0
2,284,439	-				+0.1
2,284,440	-				+0.8
2,284,447	+				+0.2
2,284,477	+				-0.1
2,284,594	+				+0.1
2,284,596	+				+0.5
2,284,596	+				-0.3
2,284,598	+				-1.1
2,284,603	-				+0.8
2,284,604	+				-1.5
2,284,606	-				-1.3
2,284,612	+				-0.3
2,284,612	+				-0.5
2,284,619	+				-0.8
2,284,619	+				-0.4
2,284,633	+				+0.6
2,284,643	+				+0.5
2,284,643	+				+1.0
2,284,643	+				-0.3
2,284,643	+				+0.3
2,284,643	+				-0.5
2,284,651	-				-1.5
2,284,651	-				-0.6
2,284,667	+		GFF2255	0.12	-1.4
2,284,692	+		GFF2255	0.16	+0.0
2,284,744	-		GFF2255	0.24	-0.0
2,284,760	+		GFF2255	0.27	+0.7
2,284,768	+		GFF2255	0.28	+0.3
2,284,773	+		GFF2255	0.29	-0.1
2,284,776	-		GFF2255	0.30	+1.6
2,284,776	-		GFF2255	0.30	+1.1
2,284,780	+		GFF2255	0.30	+0.1
2,284,781	-		GFF2255	0.30	-0.8
2,284,807	+		GFF2255	0.35	-0.7
2,284,864	+		GFF2255	0.44	-0.0
2,284,872	+		GFF2255	0.46	+0.0
2,284,872	+		GFF2255	0.46	-0.8
2,284,872	+		GFF2255	0.46	-0.4
2,284,880	-		GFF2255	0.47	-0.4
2,284,880	-		GFF2255	0.47	+0.3
2,284,880	-		GFF2255	0.47	-0.8
2,284,890	+		GFF2255	0.49	+0.4
2,284,907	-		GFF2255	0.52	+1.9
2,284,917	-		GFF2255	0.53	-0.2
2,284,917	-		GFF2255	0.53	+0.2
2,284,918	+		GFF2255	0.53	+0.2
2,284,926	-		GFF2255	0.55	-1.9
2,284,985	-		GFF2255	0.65	+0.9
2,284,987	+		GFF2255	0.65	+0.2
2,284,995	-		GFF2255	0.66	-0.2
2,284,995	-		GFF2255	0.66	-1.6
2,285,031	+		GFF2255	0.72	-0.2