Strain Fitness in Sphingobium sp. HT1-2 around GFF2219

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,235,864	+		GFF2218	0.37	+0.5
2,235,870	-		GFF2218	0.37	-0.7
2,235,874	-		GFF2218	0.38	-1.6
2,235,892	-		GFF2218	0.39	+0.3
2,235,892	-		GFF2218	0.39	-0.9
2,235,901	+		GFF2218	0.39	-2.0
2,235,901	+		GFF2218	0.39	-1.3
2,235,909	-		GFF2218	0.40	-0.1
2,235,909	-		GFF2218	0.40	+0.2
2,235,919	+		GFF2218	0.40	-2.2
2,235,919	-		GFF2218	0.40	+0.1
2,235,934	-		GFF2218	0.41	+1.3
2,235,959	+		GFF2218	0.43	+0.1
2,235,963	-		GFF2218	0.43	-1.1
2,235,963	-		GFF2218	0.43	+1.0
2,235,969	+		GFF2218	0.43	-0.7
2,235,995	-		GFF2218	0.45	-2.1
2,236,001	+		GFF2218	0.45	+0.8
2,236,031	+		GFF2218	0.47	-0.7
2,236,039	+		GFF2218	0.48	-1.3
2,236,039	-		GFF2218	0.48	-0.4
2,236,039	-		GFF2218	0.48	+0.6
2,236,039	-		GFF2218	0.48	+0.6
2,236,049	-		GFF2218	0.48	+0.1
2,236,073	-		GFF2218	0.50	-1.4
2,236,087	+		GFF2218	0.50	-0.3
2,236,092	+		GFF2218	0.51	-1.0
2,236,097	+		GFF2218	0.51	+0.3
2,236,097	+		GFF2218	0.51	+0.5
2,236,097	+		GFF2218	0.51	-0.2
2,236,100	-		GFF2218	0.51	+0.3
2,236,105	-		GFF2218	0.51	-3.2
2,236,105	-		GFF2218	0.51	+0.0
2,236,106	-		GFF2218	0.52	-1.2
2,236,135	-		GFF2218	0.53	-1.6
2,236,172	-		GFF2218	0.56	-0.4
2,236,198	-		GFF2218	0.57	-1.3
2,236,200	+		GFF2218	0.57	+0.1
2,236,200	+		GFF2218	0.57	+0.7
2,236,200	+		GFF2218	0.57	-0.5
2,236,208	-		GFF2218	0.58	+0.7
2,236,212	+		GFF2218	0.58	+1.9
2,236,220	-		GFF2218	0.58	-0.6
2,236,236	+		GFF2218	0.59	-0.6
2,236,236	+		GFF2218	0.59	-2.3
2,236,244	-		GFF2218	0.60	+0.2
2,236,244	-		GFF2218	0.60	-0.1
2,236,252	+		GFF2218	0.60	-0.4
2,236,290	+		GFF2218	0.63	+0.0
2,236,310	+		GFF2218	0.64	-1.0
2,236,310	+		GFF2218	0.64	+0.0
2,236,310	+		GFF2218	0.64	-0.3
2,236,310	+		GFF2218	0.64	+0.7
2,236,310	+		GFF2218	0.64	+0.1
2,236,313	-		GFF2218	0.64	-0.5
2,236,318	-		GFF2218	0.64	-0.5
2,236,320	-		GFF2218	0.64	-0.1
2,236,347	+		GFF2218	0.66	+0.3
2,236,361	-		GFF2218	0.67	-0.3
2,236,409	+		GFF2218	0.70	-1.8
2,236,425	-		GFF2218	0.71	-0.8
2,236,428	+		GFF2218	0.71	-0.5
2,236,453	+		GFF2218	0.72	-0.1
2,236,471	+		GFF2218	0.73	-0.9
2,236,479	-		GFF2218	0.74	+0.1
2,236,479	-		GFF2218	0.74	+1.0
2,236,484	-		GFF2218	0.74	-2.1
2,236,490	+		GFF2218	0.75	-0.5
2,236,528	-		GFF2218	0.77	+0.8
2,236,549	+		GFF2218	0.78	+1.3
2,236,549	+		GFF2218	0.78	-1.7
2,236,559	+		GFF2218	0.79	-0.5
2,236,592	-		GFF2218	0.81	+1.1
2,236,612	+		GFF2218	0.82	-0.2
2,236,617	+		GFF2218	0.82	-0.2
2,236,620	+		GFF2218	0.82	-0.4
2,236,620	+		GFF2218	0.82	-2.4
2,236,622	+		GFF2218	0.82	-1.9
2,236,622	+		GFF2218	0.82	-0.2
2,236,622	+		GFF2218	0.82	-0.5
2,236,628	-		GFF2218	0.83	+1.1
2,236,630	-		GFF2218	0.83	-0.4
2,236,633	-		GFF2218	0.83	-0.7
2,236,643	+		GFF2218	0.84	-1.5
2,236,643	+		GFF2218	0.84	-0.7
2,236,643	+		GFF2218	0.84	-0.2
2,236,651	-		GFF2218	0.84	-1.6
2,236,681	+		GFF2218	0.86	-1.7
2,236,683	+		GFF2218	0.86	-2.9
2,236,695	+		GFF2218	0.87	+0.3
2,236,698	-		GFF2218	0.87	-1.0
2,236,698	-		GFF2218	0.87	+0.9
2,236,698	-		GFF2218	0.87	-1.6
2,236,811	-				+0.6
2,236,816	-				-1.2
2,236,823	-				-0.2
2,236,824	-				-0.5
2,236,835	+				-0.9
2,236,835	+				-0.0
2,236,840	+				-1.7
2,236,843	-				-1.6
2,236,843	-				-0.1
2,236,843	-				-1.3
2,236,843	-				+0.4
2,236,843	-				-1.9
2,236,871	+				+0.1
2,236,940	+		GFF2219	0.16	+0.6
2,236,970	+		GFF2219	0.23	-1.0
2,236,972	+		GFF2219	0.23	-1.4
2,236,984	-		GFF2219	0.26	-1.5
2,236,994	+		GFF2219	0.28	-0.8
2,237,013	+		GFF2219	0.32	-0.5
2,237,044	-		GFF2219	0.39	-1.5
2,237,099	+		GFF2219	0.51	+0.3
2,237,114	+		GFF2219	0.54	+0.4
2,237,193	+		GFF2219	0.71	+0.4
2,237,202	-		GFF2219	0.73	-2.0
2,237,215	-		GFF2219	0.75	-0.8
2,237,249	+		GFF2219	0.83	-0.7
2,237,267	-		GFF2219	0.87	-1.8
2,237,299	+				-0.4
2,237,299	+				-0.6
2,237,307	-				-1.3
2,237,307	-				-0.2
2,237,307	-				+0.9
2,237,307	-				-1.5
2,237,309	+				+0.4
2,237,309	+				-0.1
2,237,317	-				-0.4
2,237,317	-				-3.0
2,237,317	-				-1.1
2,237,317	-				-0.1
2,237,321	-				+0.8
2,237,338	-				+1.2
2,237,378	+				+0.1
2,237,380	+				-0.5
2,237,485	+				-1.3
2,237,498	-				+0.7
2,237,516	+		GFF2220	0.14	+0.7
2,237,524	-		GFF2220	0.16	-1.6
2,237,525	-		GFF2220	0.16	-3.5
2,237,552	+		GFF2220	0.22	-1.6
2,237,557	+		GFF2220	0.23	+0.1
2,237,557	+		GFF2220	0.23	-2.6
2,237,557	+		GFF2220	0.23	-1.0
2,237,557	+		GFF2220	0.23	-0.1
2,237,559	+		GFF2220	0.24	-0.9
2,237,560	-		GFF2220	0.24	-0.8
2,237,560	-		GFF2220	0.24	+0.4
2,237,560	-		GFF2220	0.24	+0.1
2,237,568	-		GFF2220	0.26	+0.8
2,237,570	+		GFF2220	0.26	+0.4
2,237,575	+		GFF2220	0.28	-1.8
2,237,575	+		GFF2220	0.28	+2.3
2,237,575	+		GFF2220	0.28	-1.1
2,237,575	+		GFF2220	0.28	+0.4
2,237,575	+		GFF2220	0.28	-0.8
2,237,588	-		GFF2220	0.31	-0.3
2,237,653	+		GFF2220	0.46	-0.6
2,237,663	+		GFF2220	0.48	-0.5
2,237,663	+		GFF2220	0.48	-0.7
2,237,663	+		GFF2220	0.48	-0.5
2,237,670	+		GFF2220	0.50	-0.0
2,237,670	+		GFF2220	0.50	-0.1
2,237,670	+		GFF2220	0.50	-0.1
2,237,670	+		GFF2220	0.50	-0.1
2,237,670	+		GFF2220	0.50	-0.3
2,237,671	-		GFF2220	0.50	-0.0
2,237,671	-		GFF2220	0.50	-0.5
2,237,673	-		GFF2220	0.50	+0.2
2,237,675	+		GFF2220	0.51	+0.2
2,237,678	-		GFF2220	0.52	+0.2
2,237,678	-		GFF2220	0.52	-1.5
2,237,678	-		GFF2220	0.52	-0.8
2,237,678	-		GFF2220	0.52	-1.8
2,237,696	-		GFF2220	0.56	-2.2
2,237,712	-		GFF2220	0.59	-0.0
2,237,716	+		GFF2220	0.60	+0.1
2,237,724	-		GFF2220	0.62	+0.1
2,237,724	-		GFF2220	0.62	-0.8
2,237,739	-		GFF2220	0.66	-0.2
2,237,740	+		GFF2220	0.66	-0.8
2,237,740	+		GFF2220	0.66	-0.1
2,237,740	+		GFF2220	0.66	+0.9
2,237,741	-		GFF2220	0.66	-2.2
2,237,745	+		GFF2220	0.67	-0.8
2,237,747	-		GFF2220	0.68	-1.9
2,237,748	-		GFF2220	0.68	-0.2
2,237,753	-		GFF2220	0.69	-0.1
2,237,772	-		GFF2220	0.73	-1.3
2,237,799	-		GFF2220	0.80	-0.1
2,237,820	+		GFF2220	0.85	+0.0
2,237,832	-		GFF2220	0.87	-0.7
2,237,833	-		GFF2220	0.88	-0.3
2,237,838	-		GFF2220	0.89	-1.6
2,238,080	-				+0.1
2,238,097	+				-2.8
2,238,115	+				-0.4
2,238,115	+				-1.5
2,238,123	-				+0.4
2,238,131	+				+0.1
2,238,139	-				-1.5
2,238,139	-				+1.1
2,238,162	-				+1.3
2,238,247	+				-1.8
2,238,247	+				-0.2
2,238,255	-				+0.2