Strain Fitness in Sphingobium sp. HT1-2 around GFF2185

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,200,656	+		GFF2183	0.48	+0.4
2,200,672	-		GFF2183	0.49	+0.3
2,200,694	-		GFF2183	0.51	-0.1
2,200,703	+		GFF2183	0.52	+0.5
2,200,706	+		GFF2183	0.52	-0.2
2,200,716	-		GFF2183	0.53	+1.2
2,200,716	-		GFF2183	0.53	+1.5
2,200,764	+		GFF2183	0.58	+0.1
2,200,766	-		GFF2183	0.58	-1.3
2,200,771	+		GFF2183	0.59	+0.3
2,200,772	-		GFF2183	0.59	+0.5
2,200,779	+		GFF2183	0.59	-0.3
2,200,787	-		GFF2183	0.60	-1.9
2,200,787	-		GFF2183	0.60	-0.1
2,200,787	-		GFF2183	0.60	-1.1
2,200,834	+		GFF2183	0.65	-0.2
2,200,834	-		GFF2183	0.65	-0.5
2,200,834	-		GFF2183	0.65	-1.7
2,200,836	+		GFF2183	0.65	+0.1
2,200,836	+		GFF2183	0.65	-0.3
2,200,836	+		GFF2183	0.65	+0.7
2,200,836	+		GFF2183	0.65	-1.3
2,200,836	+		GFF2183	0.65	+1.0
2,200,839	-		GFF2183	0.65	-0.2
2,200,841	+		GFF2183	0.66	-1.7
2,200,842	-		GFF2183	0.66	-2.6
2,200,844	-		GFF2183	0.66	-0.1
2,200,844	-		GFF2183	0.66	+0.2
2,200,849	-		GFF2183	0.66	+0.5
2,200,849	-		GFF2183	0.66	+0.7
2,200,852	-		GFF2183	0.67	-2.5
2,200,889	-		GFF2183	0.70	+0.4
2,200,902	+		GFF2183	0.71	-1.7
2,200,908	+		GFF2183	0.72	+0.2
2,200,908	+		GFF2183	0.72	-0.5
2,200,916	+		GFF2183	0.73	-0.4
2,200,916	-		GFF2183	0.73	-0.6
2,200,916	-		GFF2183	0.73	-0.1
2,200,916	-		GFF2183	0.73	-1.3
2,200,916	-		GFF2183	0.73	-0.0
2,200,925	+		GFF2183	0.74	-0.7
2,200,943	+		GFF2183	0.75	-0.2
2,200,943	+		GFF2183	0.75	+0.3
2,200,943	+		GFF2183	0.75	+0.1
2,200,945	+		GFF2183	0.76	+1.4
2,200,951	-		GFF2183	0.76	-1.4
2,200,951	-		GFF2183	0.76	+0.4
2,200,951	-		GFF2183	0.76	-1.1
2,200,953	-		GFF2183	0.76	+0.9
2,200,953	-		GFF2183	0.76	-1.9
2,200,968	-		GFF2183	0.78	+1.7
2,201,030	+		GFF2183	0.84	+0.2
2,201,030	+		GFF2183	0.84	-0.0
2,201,030	+		GFF2183	0.84	-0.1
2,201,030	+		GFF2183	0.84	-0.6
2,201,040	+		GFF2183	0.85	-0.0
2,201,047	+		GFF2183	0.85	+1.6
2,201,052	+		GFF2183	0.86	+2.0
2,201,052	+		GFF2183	0.86	-1.5
2,201,055	-		GFF2183	0.86	-1.9
2,201,060	-		GFF2183	0.87	+0.3
2,201,074	+		GFF2183	0.88	-0.4
2,201,074	+		GFF2183	0.88	+0.3
2,201,074	+		GFF2183	0.88	+0.9
2,201,074	+		GFF2183	0.88	-1.8
2,201,074	+		GFF2183	0.88	+0.8
2,201,074	+		GFF2183	0.88	+0.4
2,201,074	+		GFF2183	0.88	+0.2
2,201,074	+		GFF2183	0.88	-0.7
2,201,074	+		GFF2183	0.88	-0.1
2,201,079	+		GFF2183	0.89	-0.4
2,201,082	-		GFF2183	0.89	-0.6
2,201,082	-		GFF2183	0.89	+0.4
2,201,082	-		GFF2183	0.89	+0.1
2,201,082	-		GFF2183	0.89	-1.3
2,201,082	-		GFF2183	0.89	-0.7
2,201,082	-		GFF2183	0.89	-0.3
2,201,082	-		GFF2183	0.89	-0.3
2,201,082	-		GFF2183	0.89	+1.5
2,201,082	-		GFF2183	0.89	-0.2
2,201,082	-		GFF2183	0.89	-0.0
2,201,097	-				-1.3
2,201,099	+				+0.6
2,201,099	+				-0.1
2,201,107	-				-0.1
2,201,107	-				-1.7
2,201,107	-				-1.6
2,201,113	-				+0.8
2,201,113	-				-1.3
2,201,123	+				+1.0
2,201,127	-				+0.7
2,201,127	-				-0.5
2,201,169	+				-0.6
2,201,185	+				-0.6
2,201,190	+				+0.3
2,201,190	+				+0.2
2,201,190	+				+1.3
2,201,193	-				-0.3
2,201,198	-				-0.8
2,201,198	-				+0.3
2,201,216	-				-0.1
2,201,240	-				+0.8
2,201,250	+				-1.6
2,201,257	+				-1.9
2,201,257	+				+0.3
2,201,273	+		GFF2184	0.11	+0.1
2,201,331	+		GFF2184	0.25	-2.2
2,201,351	+		GFF2184	0.29	-0.7
2,201,359	-		GFF2184	0.31	-1.0
2,201,359	-		GFF2184	0.31	-1.3
2,201,361	+		GFF2184	0.32	+1.1
2,201,361	-		GFF2184	0.32	+1.0
2,201,366	+		GFF2184	0.33	-1.2
2,201,374	-		GFF2184	0.35	+1.4
2,201,388	-		GFF2184	0.38	-0.6
2,201,393	-		GFF2184	0.39	-0.2
2,201,412	-		GFF2184	0.44	-0.5
2,201,412	-		GFF2184	0.44	-2.0
2,201,449	+		GFF2184	0.52	+0.9
2,201,449	+		GFF2184	0.52	+0.1
2,201,485	+		GFF2184	0.60	+1.0
2,201,486	+		GFF2184	0.61	+1.9
2,201,486	-		GFF2184	0.61	+0.2
2,201,494	-		GFF2184	0.62	+0.3
2,201,526	+		GFF2184	0.70	-0.4
2,201,545	-		GFF2184	0.74	+1.5
2,201,549	+		GFF2184	0.75	-0.1
2,201,549	+		GFF2184	0.75	-1.0
2,201,555	-		GFF2184	0.77	+0.1
2,201,557	-		GFF2184	0.77	+0.7
2,201,564	+		GFF2184	0.79	-0.0
2,201,572	-		GFF2184	0.81	-1.4
2,201,574	+		GFF2184	0.81	+0.0
2,201,582	-		GFF2184	0.83	+0.1
2,201,582	-		GFF2184	0.83	-0.9
2,201,582	-		GFF2184	0.83	+0.5
2,201,582	-		GFF2184	0.83	-0.5
2,201,586	+		GFF2184	0.84	-0.3
2,201,591	+		GFF2184	0.85	+1.4
2,201,591	+		GFF2184	0.85	+0.2
2,201,591	+		GFF2184	0.85	-0.6
2,201,591	+		GFF2184	0.85	-0.7
2,201,596	+		GFF2184	0.86	+1.1
2,201,596	+		GFF2184	0.86	+0.2
2,201,596	+		GFF2184	0.86	+0.2
2,201,599	-		GFF2184	0.87	+0.4
2,201,599	-		GFF2184	0.87	+0.1
2,201,604	-		GFF2184	0.88	+0.7
2,201,604	-		GFF2184	0.88	-1.9
2,201,604	-		GFF2184	0.88	+0.7
2,201,604	-		GFF2184	0.88	-0.3
2,201,604	-		GFF2184	0.88	+0.7
2,201,604	-		GFF2184	0.88	-0.6
2,201,645	-				+0.7
2,201,657	-				-1.2
2,201,661	+				+0.6
2,201,664	-				-0.9
2,201,669	-				-0.3
2,201,669	-				-1.0
2,201,669	-				-0.4
2,201,717	+		GFF2185	0.14	+1.3
2,201,717	+		GFF2185	0.14	-1.0
2,201,729	+		GFF2185	0.16	+0.9
2,201,737	-		GFF2185	0.18	+1.3
2,201,737	-		GFF2185	0.18	+0.1
2,201,750	-		GFF2185	0.21	-1.3
2,201,767	+		GFF2185	0.25	+0.2
2,201,767	+		GFF2185	0.25	-0.6
2,201,768	+		GFF2185	0.25	-1.1
2,201,780	+		GFF2185	0.27	-0.2
2,201,788	-		GFF2185	0.29	+0.2
2,201,851	-		GFF2185	0.43	-2.1
2,201,884	-		GFF2185	0.50	+0.3
2,201,886	+		GFF2185	0.50	+0.2
2,201,890	-		GFF2185	0.51	-0.1
2,201,903	+		GFF2185	0.54	+0.1
2,201,929	-		GFF2185	0.59	-1.1
2,201,935	-		GFF2185	0.60	+1.1
2,201,952	+		GFF2185	0.64	+0.0
2,201,969	-		GFF2185	0.68	-1.0
2,201,972	+		GFF2185	0.68	+1.0
2,201,986	-		GFF2185	0.71	-1.2
2,201,986	-		GFF2185	0.71	-0.7
2,201,986	-		GFF2185	0.71	-0.5
2,201,986	-		GFF2185	0.71	+0.6
2,201,986	-		GFF2185	0.71	+0.2
2,202,015	+		GFF2185	0.78	-0.6
2,202,015	+		GFF2185	0.78	+0.8
2,202,015	+		GFF2185	0.78	-0.4
2,202,015	+		GFF2185	0.78	-0.9
2,202,018	+		GFF2185	0.78	+0.8
2,202,020	+		GFF2185	0.79	-1.2
2,202,020	+		GFF2185	0.79	-0.3
2,202,023	-		GFF2185	0.79	+0.2
2,202,023	-		GFF2185	0.79	-0.0
2,202,023	-		GFF2185	0.79	+1.0
2,202,028	-		GFF2185	0.80	+0.7
2,202,028	-		GFF2185	0.80	-1.7
2,202,028	-		GFF2185	0.80	+0.3
2,202,033	-		GFF2185	0.81	-1.0
2,202,035	+		GFF2185	0.82	-1.1
2,202,076	-				+0.3
2,202,089	+				+0.5
2,202,094	+				+0.6
2,202,097	-				+0.1
2,202,097	-				+0.8
2,202,097	-				-0.9
2,202,097	-				+0.6
2,202,099	+				-0.1
2,202,099	+				+0.4
2,202,112	-				-1.9
2,202,124	-				+0.3
2,202,126	-				+0.1
2,202,131	-				-0.0
2,202,132	+				-1.5
2,202,140	+				-0.9
2,202,140	+				-0.9
2,202,147	+				-0.5
2,202,147	+				+0.2
2,202,147	+				-0.0
2,202,160	-				-0.6
2,202,163	+				-1.1
2,202,194	-				-0.2
2,202,199	-				-0.2
2,202,205	-				-0.4
2,202,236	+				+0.3
2,202,236	+				-0.6
2,202,236	+				+0.7
2,202,236	+				+0.1
2,202,236	+				+0.7
2,202,236	+				-0.9
2,202,236	+				-0.9
2,202,236	+				+1.6
2,202,236	+				-0.4
2,202,236	+				+0.2
2,202,236	+				-1.5
2,202,236	+				-0.2
2,202,236	+				-0.3
2,202,236	+				-0.4
2,202,241	+				-2.1
2,202,244	-				+0.1
2,202,244	-				+0.3
2,202,244	-				-0.4
2,202,244	-				+0.7
2,202,244	-				+0.1
2,202,244	-				-1.8
2,202,244	-				+0.9
2,202,252	+				-0.5
2,202,295	+		GFF2186	0.15	-0.3
2,202,305	+		GFF2186	0.16	+1.2
2,202,335	+		GFF2186	0.21	-0.1
2,202,335	+		GFF2186	0.21	+1.1
2,202,335	-		GFF2186	0.21	-1.1
2,202,395	+		GFF2186	0.30	-1.6
2,202,403	+		GFF2186	0.31	-0.4
2,202,403	-		GFF2186	0.31	-0.6
2,202,403	-		GFF2186	0.31	-0.2
2,202,403	-		GFF2186	0.31	-0.0
2,202,410	-		GFF2186	0.33	-0.6
2,202,418	+		GFF2186	0.34	+0.5
2,202,423	+		GFF2186	0.35	-0.4
2,202,436	-		GFF2186	0.37	-1.1
2,202,474	-		GFF2186	0.43	-2.1
2,202,496	-		GFF2186	0.46	-0.2
2,202,537	+		GFF2186	0.52	-0.3
2,202,541	-		GFF2186	0.53	-1.2
2,202,542	+		GFF2186	0.53	-2.2
2,202,545	-		GFF2186	0.54	-0.7
2,202,567	+		GFF2186	0.57	-0.5
2,202,571	+		GFF2186	0.58	-0.4
2,202,571	+		GFF2186	0.58	-0.4
2,202,571	+		GFF2186	0.58	-0.4
2,202,575	-		GFF2186	0.58	-0.4
2,202,579	-		GFF2186	0.59	-1.5
2,202,581	+		GFF2186	0.59	-0.6
2,202,581	+		GFF2186	0.59	+0.9
2,202,581	+		GFF2186	0.59	-2.1
2,202,581	+		GFF2186	0.59	-0.2
2,202,582	+		GFF2186	0.59	-0.3
2,202,584	-		GFF2186	0.60	+0.8
2,202,589	-		GFF2186	0.60	-0.6
2,202,589	-		GFF2186	0.60	-1.8
2,202,590	-		GFF2186	0.61	-1.2
2,202,598	+		GFF2186	0.62	-0.7
2,202,600	+		GFF2186	0.62	-0.8
2,202,600	-		GFF2186	0.62	-1.6
2,202,645	+		GFF2186	0.69	-0.1
2,202,652	+		GFF2186	0.70	+0.1
2,202,655	+		GFF2186	0.71	+0.1
2,202,655	-		GFF2186	0.71	+2.2
2,202,660	-		GFF2186	0.71	-0.6
2,202,660	-		GFF2186	0.71	+0.5
2,202,680	+		GFF2186	0.75	-0.3
2,202,680	+		GFF2186	0.75	-2.1
2,202,688	-		GFF2186	0.76	+0.4
2,202,688	-		GFF2186	0.76	+0.9
2,202,688	-		GFF2186	0.76	-1.5
2,202,690	+		GFF2186	0.76	-0.5
2,202,690	+		GFF2186	0.76	-1.3
2,202,698	-		GFF2186	0.77	+0.8
2,202,700	+		GFF2186	0.78	+1.4
2,202,707	+		GFF2186	0.79	+0.1
2,202,707	+		GFF2186	0.79	-0.3
2,202,707	+		GFF2186	0.79	-0.4
2,202,707	+		GFF2186	0.79	-0.7
2,202,715	-		GFF2186	0.80	-0.3
2,202,715	-		GFF2186	0.80	-0.2
2,202,715	-		GFF2186	0.80	+1.2
2,202,715	-		GFF2186	0.80	+0.3
2,202,715	-		GFF2186	0.80	+0.4
2,202,715	-		GFF2186	0.80	-1.4
2,202,739	-		GFF2186	0.84	+0.7
2,202,747	-		GFF2186	0.85	+0.8
2,202,747	-		GFF2186	0.85	-1.3
2,202,756	+		GFF2186	0.86	+0.5
2,202,773	+		GFF2186	0.89	-0.5
2,202,773	-		GFF2186	0.89	-1.0
2,202,794	+				-0.1
2,202,795	+				-2.1
2,202,795	+				+0.1
2,202,795	-				+0.5
2,202,803	-				+1.4
2,202,843	-				-0.2
2,202,854	-				-1.3
2,202,856	+				-1.3
2,202,864	-				-0.8
2,202,871	+				-0.2
2,202,877	+				+0.2
2,202,877	+				-1.4
2,202,907	+		GFF2187	0.10	-2.3
2,202,919	+		GFF2187	0.12	+0.1
2,202,927	+		GFF2187	0.13	+1.3
2,202,927	-		GFF2187	0.13	-1.3
2,202,933	+		GFF2187	0.14	-0.5
2,202,933	+		GFF2187	0.14	-1.5
2,202,941	-		GFF2187	0.15	+1.4
2,203,012	+		GFF2187	0.26	-0.9
2,203,012	+		GFF2187	0.26	-0.7
2,203,012	+		GFF2187	0.26	+0.7
2,203,012	+		GFF2187	0.26	+0.7
2,203,012	+		GFF2187	0.26	+0.7
2,203,012	+		GFF2187	0.26	+0.5
2,203,015	+		GFF2187	0.27	+0.8
2,203,020	-		GFF2187	0.27	-0.4
2,203,020	-		GFF2187	0.27	+0.5
2,203,020	-		GFF2187	0.27	-1.2
2,203,041	-		GFF2187	0.31	+0.3
2,203,046	-		GFF2187	0.31	-0.9
2,203,056	-		GFF2187	0.33	-0.5
2,203,072	-		GFF2187	0.35	+0.1
2,203,077	+		GFF2187	0.36	-0.1
2,203,077	-		GFF2187	0.36	+1.1
2,203,077	-		GFF2187	0.36	-0.5
2,203,077	-		GFF2187	0.36	-1.9
2,203,077	-		GFF2187	0.36	-2.1
2,203,087	+		GFF2187	0.38	-0.1
2,203,088	+		GFF2187	0.38	+0.4
2,203,095	+		GFF2187	0.39	+0.9
2,203,096	-		GFF2187	0.39	-0.4
2,203,096	-		GFF2187	0.39	-1.1
2,203,101	-		GFF2187	0.40	-0.1
2,203,102	-		GFF2187	0.40	-1.2
2,203,113	-		GFF2187	0.42	-2.8
2,203,115	-		GFF2187	0.42	-0.8