Strain Fitness in Sphingobium sp. HT1-2 around GFF2147

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,176,474	-		GFF2146	0.30	+0.4
2,176,494	+		GFF2146	0.32	+0.7
2,176,502	-		GFF2146	0.32	+0.6
2,176,507	-		GFF2146	0.33	+0.0
2,176,508	-		GFF2146	0.33	-1.4
2,176,566	+		GFF2146	0.37	+0.5
2,176,576	-		GFF2146	0.38	-0.3
2,176,576	-		GFF2146	0.38	-1.4
2,176,579	-		GFF2146	0.38	+0.2
2,176,588	+		GFF2146	0.39	+1.4
2,176,631	+		GFF2146	0.42	+0.8
2,176,631	+		GFF2146	0.42	+0.4
2,176,631	+		GFF2146	0.42	+0.8
2,176,639	-		GFF2146	0.43	-0.3
2,176,639	-		GFF2146	0.43	+0.4
2,176,639	-		GFF2146	0.43	-1.7
2,176,639	-		GFF2146	0.43	+0.4
2,176,639	-		GFF2146	0.43	+0.3
2,176,639	-		GFF2146	0.43	-0.7
2,176,639	-		GFF2146	0.43	+1.4
2,176,639	-		GFF2146	0.43	+0.4
2,176,639	-		GFF2146	0.43	+1.9
2,176,639	-		GFF2146	0.43	+0.3
2,176,639	-		GFF2146	0.43	-0.3
2,176,741	+		GFF2146	0.51	-0.7
2,176,762	-		GFF2146	0.53	-0.0
2,176,762	-		GFF2146	0.53	-0.1
2,176,774	+		GFF2146	0.53	+0.1
2,176,799	+		GFF2146	0.55	+0.4
2,176,817	+		GFF2146	0.57	-0.4
2,176,822	+		GFF2146	0.57	-1.0
2,176,825	-		GFF2146	0.57	-1.0
2,176,862	+		GFF2146	0.60	+1.0
2,176,862	+		GFF2146	0.60	-1.9
2,176,868	+		GFF2146	0.61	-0.4
2,176,868	+		GFF2146	0.61	-1.9
2,176,868	+		GFF2146	0.61	+0.6
2,176,876	-		GFF2146	0.61	-0.7
2,176,884	+		GFF2146	0.62	-0.3
2,176,955	-		GFF2146	0.67	-1.0
2,176,974	+		GFF2146	0.69	+0.0
2,176,974	+		GFF2146	0.69	-0.9
2,176,980	-		GFF2146	0.69	-0.4
2,176,982	-		GFF2146	0.70	-0.4
2,176,984	-		GFF2146	0.70	+0.6
2,177,157	+		GFF2146	0.83	-1.6
2,177,168	+		GFF2146	0.84	+0.7
2,177,180	-		GFF2146	0.85	+0.1
2,177,207	+		GFF2146	0.87	-0.1
2,177,245	-		GFF2146	0.90	+0.7
2,177,254	+				+1.9
2,177,279	+				+0.2
2,177,279	+				+1.0
2,177,299	-				+0.1
2,177,318	+				+0.6
2,177,318	+				-0.3
2,177,326	-				-0.0
2,177,336	-				+0.2
2,177,355	+				-0.0
2,177,417	+				-2.4
2,177,417	+				-0.7
2,177,417	+				+0.8
2,177,425	-				+0.1
2,177,452	+				+0.0
2,177,458	-				-0.3
2,177,462	+				+0.3
2,177,462	+				-0.7
2,177,470	-				+0.4
2,177,477	-				-0.4
2,177,512	-				-0.4
2,177,533	+				-0.4
2,177,533	+				+0.1
2,177,533	+				-1.3
2,177,537	-				-1.5
2,177,541	-				+0.0
2,177,541	-				-1.0
2,177,541	-				+0.0
2,177,541	-				-1.1
2,177,541	-				-2.7
2,177,541	-				+0.6
2,177,541	-				+0.1
2,177,541	-				-0.8
2,177,551	-				+0.6
2,177,596	+		GFF2147	0.12	+0.1
2,177,687	+		GFF2147	0.21	-2.3
2,177,718	-		GFF2147	0.23	-2.4
2,177,725	+		GFF2147	0.24	-1.1
2,177,725	+		GFF2147	0.24	-0.5
2,177,725	+		GFF2147	0.24	-0.1
2,177,725	+		GFF2147	0.24	+1.3
2,177,733	-		GFF2147	0.25	+0.8
2,177,733	-		GFF2147	0.25	+0.1
2,177,733	-		GFF2147	0.25	+1.2
2,177,733	-		GFF2147	0.25	-0.1
2,177,733	-		GFF2147	0.25	-2.8
2,177,733	-		GFF2147	0.25	-1.0
2,177,733	-		GFF2147	0.25	+0.7
2,177,790	+		GFF2147	0.30	+0.2
2,177,790	+		GFF2147	0.30	-0.8
2,177,790	+		GFF2147	0.30	-0.4
2,177,803	+		GFF2147	0.32	-0.4
2,177,811	-		GFF2147	0.32	-0.2
2,177,827	-		GFF2147	0.34	+1.4
2,177,827	-		GFF2147	0.34	+0.8
2,177,827	-		GFF2147	0.34	+0.7
2,177,897	+		GFF2147	0.40	-0.8
2,177,905	-		GFF2147	0.41	-0.2
2,177,910	-		GFF2147	0.42	-1.0
2,177,912	+		GFF2147	0.42	-0.8
2,177,920	-		GFF2147	0.43	+0.7
2,177,920	-		GFF2147	0.43	+0.4
2,177,935	-		GFF2147	0.44	-1.6
2,177,949	+		GFF2147	0.45	-0.2
2,177,955	-		GFF2147	0.46	+0.9
2,178,011	+		GFF2147	0.51	-1.5
2,178,020	+		GFF2147	0.52	-0.1
2,178,028	+		GFF2147	0.53	-0.8
2,178,052	-		GFF2147	0.55	+0.4
2,178,066	-		GFF2147	0.57	+0.2
2,178,075	-		GFF2147	0.57	-1.7
2,178,101	+		GFF2147	0.60	-0.4
2,178,184	+		GFF2147	0.68	+0.5
2,178,212	-		GFF2147	0.70	+0.0
2,178,219	+		GFF2147	0.71	+0.1
2,178,227	-		GFF2147	0.72	-2.2
2,178,227	-		GFF2147	0.72	-1.4
2,178,262	+		GFF2147	0.75	-2.1
2,178,270	-		GFF2147	0.76	+0.3
2,178,270	-		GFF2147	0.76	+1.1
2,178,340	-		GFF2147	0.83	+0.5
2,178,397	-		GFF2147	0.88	+0.0
2,178,473	+				-0.6
2,178,483	+				-0.6
2,178,486	-				-0.2
2,178,487	+				+0.1
2,178,527	+				+1.4
2,178,532	-				+0.1
2,178,589	+				-0.8
2,178,632	-				+0.3
2,178,633	+				+0.5
2,178,634	+				-1.0
2,178,637	-				-0.2
2,178,692	+		GFF2148	0.13	-0.7
2,178,692	+		GFF2148	0.13	-1.2
2,178,700	-		GFF2148	0.13	+0.9
2,178,710	-		GFF2148	0.14	-0.6
2,178,729	-		GFF2148	0.15	+0.7
2,178,729	-		GFF2148	0.15	+0.7
2,178,737	+		GFF2148	0.16	+0.4
2,178,752	+		GFF2148	0.17	-0.4
2,178,761	+		GFF2148	0.18	+0.5
2,178,769	-		GFF2148	0.19	-2.5
2,178,813	-		GFF2148	0.22	-1.3
2,178,824	-		GFF2148	0.23	-0.6
2,178,826	+		GFF2148	0.23	+0.3
2,178,850	-		GFF2148	0.25	+0.7
2,178,852	-		GFF2148	0.25	-0.0
2,178,855	-		GFF2148	0.25	-0.2
2,178,855	-		GFF2148	0.25	+0.1
2,178,890	-		GFF2148	0.28	-1.1
2,178,987	-		GFF2148	0.35	-1.2
2,179,068	+		GFF2148	0.42	-0.3
2,179,105	+		GFF2148	0.44	+0.4
2,179,105	+		GFF2148	0.44	-0.3
2,179,105	+		GFF2148	0.44	+0.1
2,179,105	+		GFF2148	0.44	-1.7
2,179,113	-		GFF2148	0.45	-1.6
2,179,150	+		GFF2148	0.48	+1.5
2,179,172	+		GFF2148	0.50	-1.2
2,179,177	+		GFF2148	0.50	-1.1
2,179,177	+		GFF2148	0.50	-0.6
2,179,179	-		GFF2148	0.50	+0.7
2,179,206	-		GFF2148	0.52	+0.1
2,179,207	-		GFF2148	0.52	-0.3
2,179,212	-		GFF2148	0.53	-1.7
2,179,212	-		GFF2148	0.53	-1.5
2,179,212	-		GFF2148	0.53	-0.7
2,179,234	-		GFF2148	0.54	-0.2
2,179,295	+		GFF2148	0.59	-0.5
2,179,296	+		GFF2148	0.59	-0.7
2,179,344	+		GFF2148	0.63	+2.9
2,179,352	-		GFF2148	0.64	+1.4
2,179,396	+		GFF2148	0.67	-1.5
2,179,432	+		GFF2148	0.70	+0.4
2,179,474	+		GFF2148	0.73	-0.8
2,179,482	-		GFF2148	0.74	+0.6
2,179,482	-		GFF2148	0.74	-0.0
2,179,510	+		GFF2148	0.76	-0.0
2,179,522	+		GFF2148	0.77	-0.5
2,179,522	+		GFF2148	0.77	+1.1
2,179,522	+		GFF2148	0.77	-0.0