Strain Fitness in Sphingobium sp. HT1-2 around GFF2061

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,097,619	-		GFF2060	0.48	-2.3
2,097,694	-		GFF2060	0.53	-2.0
2,097,706	+		GFF2060	0.53	-1.8
2,097,708	-		GFF2060	0.54	-0.6
2,097,719	-		GFF2060	0.54	-1.7
2,097,734	+		GFF2060	0.55	-1.6
2,097,742	+		GFF2060	0.56	-3.3
2,097,742	-		GFF2060	0.56	-1.4
2,097,743	-		GFF2060	0.56	-2.1
2,097,782	+		GFF2060	0.58	-1.8
2,097,785	-		GFF2060	0.58	-4.2
2,097,878	+		GFF2060	0.64	-2.2
2,097,878	+		GFF2060	0.64	-2.7
2,097,878	+		GFF2060	0.64	-2.0
2,097,878	+		GFF2060	0.64	-2.8
2,097,878	+		GFF2060	0.64	-2.4
2,097,878	+		GFF2060	0.64	-2.2
2,097,886	-		GFF2060	0.64	-2.7
2,097,886	-		GFF2060	0.64	-0.6
2,097,886	-		GFF2060	0.64	-0.6
2,097,886	-		GFF2060	0.64	-2.6
2,097,886	-		GFF2060	0.64	-2.0
2,097,886	-		GFF2060	0.64	-3.2
2,097,897	-		GFF2060	0.65	-0.8
2,097,915	+		GFF2060	0.66	-1.4
2,097,915	+		GFF2060	0.66	-1.8
2,097,915	+		GFF2060	0.66	-2.5
2,097,915	+		GFF2060	0.66	-2.7
2,097,915	+		GFF2060	0.66	-3.3
2,097,915	+		GFF2060	0.66	-1.2
2,097,915	+		GFF2060	0.66	-3.1
2,097,915	+		GFF2060	0.66	-3.0
2,097,915	-		GFF2060	0.66	-1.4
2,097,923	-		GFF2060	0.66	+0.0
2,097,923	-		GFF2060	0.66	-2.8
2,097,936	+		GFF2060	0.67	-2.0
2,097,963	+		GFF2060	0.69	-1.1
2,097,963	+		GFF2060	0.69	+0.2
2,097,995	+		GFF2060	0.71	-1.6
2,097,995	+		GFF2060	0.71	-1.1
2,098,003	+		GFF2060	0.71	-1.0
2,098,003	-		GFF2060	0.71	-0.4
2,098,003	-		GFF2060	0.71	-0.2
2,098,003	-		GFF2060	0.71	-2.2
2,098,010	-		GFF2060	0.72	-2.0
2,098,013	+		GFF2060	0.72	-3.7
2,098,021	-		GFF2060	0.72	-2.3
2,098,044	-		GFF2060	0.74	-2.6
2,098,052	+		GFF2060	0.74	-2.7
2,098,105	+		GFF2060	0.77	-2.1
2,098,116	+		GFF2060	0.78	-3.4
2,098,141	+		GFF2060	0.79	-2.8
2,098,147	-		GFF2060	0.80	-1.5
2,098,149	-		GFF2060	0.80	-0.6
2,098,149	-		GFF2060	0.80	-2.3
2,098,223	-		GFF2060	0.84	-2.7
2,098,236	+		GFF2060	0.85	-3.2
2,098,249	+		GFF2060	0.86	-1.1
2,098,251	-		GFF2060	0.86	-0.9
2,098,253	+		GFF2060	0.86	-2.1
2,098,289	+		GFF2060	0.88	-3.7
2,098,304	-		GFF2060	0.89	-3.0
2,098,304	-		GFF2060	0.89	-2.4
2,098,393	-				-4.0
2,098,397	+				-1.4
2,098,436	+				-0.2
2,098,436	+				-2.3
2,098,436	+				-1.8
2,098,436	+				-3.7
2,098,436	+				-2.6
2,098,436	+				-1.6
2,098,436	+				-2.4
2,098,436	+				-1.5
2,098,436	+				-2.4
2,098,436	+				-3.0
2,098,436	+				-1.7
2,098,436	+				-2.0
2,098,436	+				-1.8
2,098,436	+				-2.7
2,098,444	-				-2.1
2,098,444	-				-2.5
2,098,444	-				-2.0
2,098,444	-				-1.3
2,098,444	-				-2.8
2,098,444	-				-2.2
2,098,444	-				-4.2
2,098,444	-				-2.9
2,098,463	+				-2.7
2,098,501	-				+2.1
2,098,524	-				+1.7
2,098,549	-				+1.0
2,098,551	+				-0.4
2,098,556	+				-0.9
2,098,556	+				+0.7
2,098,570	-				+0.3
2,098,579	+				+0.7
2,098,604	+				+0.9
2,098,628	+				+0.4
2,098,628	-				-0.3
2,098,638	+				-0.7
2,098,638	-				-1.0
2,098,646	-				+0.4
2,098,697	-				+0.3
2,098,727	-				+0.3
2,098,736	-				+0.4
2,098,758	+		GFF2061	0.11	+0.7
2,098,891	+		GFF2061	0.21	-0.8
2,098,904	-		GFF2061	0.22	+0.1
2,098,928	+		GFF2061	0.23	-0.8
2,098,931	-		GFF2061	0.24	+0.4
2,098,936	-		GFF2061	0.24	-1.0
2,098,988	+		GFF2061	0.28	+0.3
2,098,996	-		GFF2061	0.28	-1.4
2,099,015	+		GFF2061	0.30	+0.8
2,099,022	+		GFF2061	0.30	-1.5
2,099,022	+		GFF2061	0.30	-0.8
2,099,060	+		GFF2061	0.33	-0.2
2,099,068	-		GFF2061	0.34	-0.6
2,099,108	-		GFF2061	0.37	-0.3
2,099,118	-		GFF2061	0.37	+1.0
2,099,129	+		GFF2061	0.38	-0.2
2,099,129	+		GFF2061	0.38	+0.3
2,099,138	+		GFF2061	0.39	+1.1
2,099,192	+		GFF2061	0.43	+1.1
2,099,192	+		GFF2061	0.43	+0.6
2,099,192	+		GFF2061	0.43	-0.8
2,099,200	-		GFF2061	0.43	+1.0
2,099,200	-		GFF2061	0.43	+0.3
2,099,224	+		GFF2061	0.45	-0.1
2,099,239	-		GFF2061	0.46	+0.2
2,099,257	-		GFF2061	0.47	+0.0
2,099,259	+		GFF2061	0.47	+0.1
2,099,311	+		GFF2061	0.51	-0.2
2,099,372	+		GFF2061	0.56	+0.7
2,099,419	-		GFF2061	0.59	+0.6
2,099,433	+		GFF2061	0.60	+0.0
2,099,440	-		GFF2061	0.61	-0.7
2,099,440	-		GFF2061	0.61	+0.5
2,099,440	-		GFF2061	0.61	-2.6
2,099,441	-		GFF2061	0.61	-0.5
2,099,462	-		GFF2061	0.62	+0.5
2,099,462	-		GFF2061	0.62	-0.2
2,099,476	-		GFF2061	0.63	+1.9
2,099,494	+		GFF2061	0.64	+1.4
2,099,519	+		GFF2061	0.66	-1.0
2,099,525	-		GFF2061	0.67	-0.8
2,099,527	-		GFF2061	0.67	-0.1
2,099,527	-		GFF2061	0.67	+0.0
2,099,527	-		GFF2061	0.67	-0.6
2,099,539	-		GFF2061	0.68	+0.8
2,099,583	+		GFF2061	0.71	-0.2
2,099,583	+		GFF2061	0.71	-1.8
2,099,697	+		GFF2061	0.79	-1.1
2,099,697	+		GFF2061	0.79	-0.3
2,099,822	+		GFF2061	0.88	+1.0
2,099,824	+		GFF2061	0.88	-0.6
2,099,835	+		GFF2061	0.89	+1.3
2,099,851	-				-1.0
2,099,862	+				-2.8
2,099,924	+				+0.3
2,099,932	-				+0.3
2,099,950	-				-1.1
2,099,950	-				+0.3
2,099,995	-				-0.1
2,100,084	-				-0.8
2,100,089	-				+0.2
2,100,090	+				-0.4
2,100,090	+				-1.8
2,100,090	+				+0.4
2,100,098	-				+0.4
2,100,099	-				-1.8
2,100,141	+				-1.8
2,100,151	-				+0.6
2,100,199	+				+0.9
2,100,228	+				-0.1
2,100,281	-				+0.5
2,100,307	+				+1.4
2,100,308	+				-0.3
2,100,308	+				-0.3
2,100,365	+		GFF2062	0.14	-0.1
2,100,373	-		GFF2062	0.15	+2.1
2,100,410	+		GFF2062	0.18	+0.0
2,100,410	+		GFF2062	0.18	-0.4
2,100,418	-		GFF2062	0.18	-0.3
2,100,440	-		GFF2062	0.20	+0.3
2,100,443	+		GFF2062	0.20	+0.2
2,100,443	+		GFF2062	0.20	+0.0
2,100,486	-		GFF2062	0.24	+2.0
2,100,486	-		GFF2062	0.24	-1.0
2,100,486	-		GFF2062	0.24	-0.1
2,100,519	+		GFF2062	0.26	+0.8
2,100,519	+		GFF2062	0.26	-0.2
2,100,519	+		GFF2062	0.26	+0.8
2,100,519	+		GFF2062	0.26	+0.6
2,100,527	-		GFF2062	0.27	+0.1
2,100,527	-		GFF2062	0.27	-1.0
2,100,529	+		GFF2062	0.27	+0.0
2,100,532	-		GFF2062	0.27	+0.5
2,100,588	+		GFF2062	0.31	-1.0
2,100,588	+		GFF2062	0.31	+1.5
2,100,614	-		GFF2062	0.33	-0.0
2,100,709	+		GFF2062	0.41	-2.1
2,100,734	+		GFF2062	0.43	-0.7
2,100,743	-		GFF2062	0.43	-0.2
2,100,786	+		GFF2062	0.47	+0.3
2,100,786	+		GFF2062	0.47	+0.3
2,100,786	+		GFF2062	0.47	-0.6
2,100,786	+		GFF2062	0.47	+0.4
2,100,786	+		GFF2062	0.47	-0.1
2,100,786	+		GFF2062	0.47	-0.6
2,100,794	-		GFF2062	0.47	-0.1
2,100,794	-		GFF2062	0.47	+0.5
2,100,794	-		GFF2062	0.47	+0.5
2,100,794	-		GFF2062	0.47	-1.0
2,100,794	-		GFF2062	0.47	+0.9
2,100,794	-		GFF2062	0.47	+0.0
2,100,794	-		GFF2062	0.47	-0.4
2,100,794	-		GFF2062	0.47	-0.6
2,100,794	-		GFF2062	0.47	+1.0
2,100,794	-		GFF2062	0.47	+1.1
2,100,794	-		GFF2062	0.47	-0.1
2,100,794	-		GFF2062	0.47	-0.0
2,100,794	-		GFF2062	0.47	-0.5
2,100,794	-		GFF2062	0.47	+0.5
2,100,796	+		GFF2062	0.47	+0.8
2,100,799	-		GFF2062	0.48	-1.2
2,100,799	-		GFF2062	0.48	+0.3
2,100,805	-		GFF2062	0.48	-1.8
2,100,853	+		GFF2062	0.52	+0.4
2,100,861	-		GFF2062	0.52	+0.0
2,100,878	+		GFF2062	0.54	-0.5
2,100,878	+		GFF2062	0.54	-0.1
2,100,886	-		GFF2062	0.54	-0.3
2,100,894	-		GFF2062	0.55	+1.2
2,100,904	+		GFF2062	0.56	+1.2
2,100,909	+		GFF2062	0.56	-1.2
2,100,955	+		GFF2062	0.60	+1.6
2,100,970	-		GFF2062	0.61	+1.0