Strain Fitness in Sphingobium sp. HT1-2 around GFF1998

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,017,122	+		GFF1996	0.35	-0.6
2,017,130	-		GFF1996	0.36	-0.8
2,017,130	-		GFF1996	0.36	+0.0
2,017,141	-		GFF1996	0.38	+0.5
2,017,229	+		GFF1996	0.51	+0.8
2,017,260	-		GFF1996	0.56	+1.5
2,017,358	-		GFF1996	0.72	+0.0
2,017,360	+		GFF1996	0.72	-0.5
2,017,385	+		GFF1996	0.76	+1.3
2,017,394	-		GFF1996	0.77	-0.7
2,017,403	-		GFF1996	0.79	-1.9
2,017,439	-		GFF1996	0.84	+0.5
2,017,443	-		GFF1996	0.85	-0.8
2,017,443	-		GFF1996	0.85	+1.2
2,017,447	-		GFF1996	0.86	+0.9
2,017,447	-		GFF1996	0.86	+1.1
2,017,451	+		GFF1996	0.86	+0.7
2,017,471	+		GFF1996	0.89	-1.0
2,017,484	+				+0.3
2,017,501	+				+0.4
2,017,525	-				+0.2
2,017,536	-				-2.1
2,017,590	-				-0.7
2,017,603	+				-0.6
2,017,603	+				+0.7
2,017,603	+				-1.0
2,017,603	+				-0.9
2,017,603	+				-0.7
2,017,611	-				-1.5
2,017,611	-				-0.2
2,017,611	-				-0.4
2,017,611	-				-2.1
2,017,611	-				+0.8
2,017,616	+				+0.6
2,017,621	+				+1.3
2,017,656	+				+0.7
2,017,656	+				-1.4
2,017,662	+				-1.9
2,017,664	-		GFF1997	0.10	+0.4
2,017,670	-		GFF1997	0.11	-0.2
2,017,719	+		GFF1997	0.21	+1.9
2,017,719	+		GFF1997	0.21	-1.6
2,017,719	+		GFF1997	0.21	-0.7
2,017,727	-		GFF1997	0.23	-0.5
2,017,727	-		GFF1997	0.23	-0.3
2,017,727	-		GFF1997	0.23	+0.2
2,017,729	+		GFF1997	0.23	-0.7
2,017,737	-		GFF1997	0.25	-0.3
2,017,773	+		GFF1997	0.32	-2.9
2,017,776	-		GFF1997	0.33	+0.9
2,017,794	-		GFF1997	0.36	+0.3
2,017,829	-		GFF1997	0.43	+0.5
2,017,831	+		GFF1997	0.44	-0.1
2,017,831	+		GFF1997	0.44	+0.7
2,017,831	+		GFF1997	0.44	+0.3
2,017,832	+		GFF1997	0.44	-1.5
2,017,839	-		GFF1997	0.45	-0.3
2,017,839	-		GFF1997	0.45	+0.5
2,017,846	+		GFF1997	0.47	+0.3
2,017,846	+		GFF1997	0.47	+0.7
2,017,854	-		GFF1997	0.48	-1.8
2,017,854	-		GFF1997	0.48	-0.8
2,017,894	+		GFF1997	0.56	-0.5
2,017,896	+		GFF1997	0.56	+0.8
2,017,898	-		GFF1997	0.57	-0.7
2,017,903	-		GFF1997	0.58	-2.0
2,017,913	+		GFF1997	0.60	+1.4
2,017,916	+		GFF1997	0.60	-2.3
2,017,918	+		GFF1997	0.61	+0.1
2,017,926	-		GFF1997	0.62	-0.2
2,017,926	-		GFF1997	0.62	-0.6
2,017,926	-		GFF1997	0.62	-0.6
2,017,941	+		GFF1997	0.65	-0.8
2,017,960	+		GFF1997	0.69	-0.7
2,018,020	+		GFF1997	0.81	-0.8
2,018,020	+		GFF1997	0.81	-1.5
2,018,028	-		GFF1997	0.83	-0.4
2,018,028	-		GFF1997	0.83	+0.9
2,018,028	-		GFF1997	0.83	-0.1
2,018,028	-		GFF1997	0.83	+1.2
2,018,028	-		GFF1997	0.83	-2.2
2,018,106	-				-0.5
2,018,113	+				+0.4
2,018,131	+				-0.9
2,018,139	-				+0.1
2,018,139	-				-1.4
2,018,139	-				-0.3
2,018,139	-				-0.5
2,018,153	-				-0.4
2,018,185	+		GFF1998	0.13	-0.8
2,018,190	+		GFF1998	0.14	+0.2
2,018,203	+		GFF1998	0.17	-0.8
2,018,203	+		GFF1998	0.17	+0.3
2,018,203	+		GFF1998	0.17	+0.6
2,018,203	+		GFF1998	0.17	+1.0
2,018,203	+		GFF1998	0.17	+0.7
2,018,211	-		GFF1998	0.18	-1.1
2,018,211	-		GFF1998	0.18	-1.9
2,018,211	-		GFF1998	0.18	+0.3
2,018,211	-		GFF1998	0.18	+0.3
2,018,211	-		GFF1998	0.18	-0.2
2,018,232	-		GFF1998	0.23	-2.0
2,018,233	+		GFF1998	0.23	-1.0
2,018,233	+		GFF1998	0.23	-1.5
2,018,233	+		GFF1998	0.23	-0.1
2,018,233	+		GFF1998	0.23	-0.1
2,018,233	+		GFF1998	0.23	-0.8
2,018,241	-		GFF1998	0.24	-0.8
2,018,241	-		GFF1998	0.24	-0.1
2,018,245	+		GFF1998	0.25	-0.1
2,018,247	+		GFF1998	0.25	-0.1
2,018,274	-		GFF1998	0.31	+0.3
2,018,280	-		GFF1998	0.32	-0.5
2,018,280	-		GFF1998	0.32	-2.4
2,018,302	+		GFF1998	0.36	-1.0
2,018,330	+		GFF1998	0.41	-1.4
2,018,356	+		GFF1998	0.46	-0.4
2,018,356	+		GFF1998	0.46	-0.5
2,018,364	-		GFF1998	0.48	-1.4
2,018,364	-		GFF1998	0.48	+0.1
2,018,374	+		GFF1998	0.50	+0.5
2,018,374	+		GFF1998	0.50	-0.2
2,018,379	+		GFF1998	0.51	-0.5
2,018,379	+		GFF1998	0.51	-0.0
2,018,382	-		GFF1998	0.51	-1.0
2,018,382	-		GFF1998	0.51	-1.6
2,018,382	-		GFF1998	0.51	-0.1
2,018,382	-		GFF1998	0.51	+1.3
2,018,387	+		GFF1998	0.52	-0.1
2,018,412	-		GFF1998	0.57	+0.6
2,018,412	-		GFF1998	0.57	-0.4
2,018,414	+		GFF1998	0.58	-0.5
2,018,414	+		GFF1998	0.58	-0.5
2,018,422	-		GFF1998	0.59	+0.5
2,018,422	-		GFF1998	0.59	-0.4
2,018,426	-		GFF1998	0.60	+0.5
2,018,489	-		GFF1998	0.72	+0.2
2,018,565	+		GFF1998	0.87	+0.3
2,018,573	-		GFF1998	0.88	-0.3
2,018,573	-		GFF1998	0.88	-1.2
2,018,576	+		GFF1998	0.89	-1.0
2,018,623	-				-2.9
2,018,623	-				-0.3
2,018,624	-				-2.9
2,018,650	+				+1.5
2,018,656	+				-1.1
2,018,657	-				+0.2
2,018,663	+				-0.9
2,018,671	-				-2.2
2,018,691	-				-0.4
2,018,707	+				+1.3
2,018,721	-				-1.4
2,018,723	+				+0.7
2,018,731	-				-1.5
2,018,733	+				+0.4
2,018,736	+				-1.6
2,018,738	+				-0.4
2,018,745	-				-0.8
2,018,753	+				-0.3
2,018,769	-				-0.4
2,018,770	+				-0.7
2,018,789	-				-0.4
2,018,813	+				-1.3
2,018,813	+				+1.1
2,018,813	+				+0.4
2,018,821	-				-0.2
2,018,821	-				-0.6
2,018,821	-				-2.0
2,018,821	-				-0.3
2,018,844	-		GFF1999	0.10	-2.0
2,018,873	+		GFF1999	0.12	+1.1
2,018,879	+		GFF1999	0.13	-0.6
2,018,913	+		GFF1999	0.16	-1.3
2,018,918	+		GFF1999	0.16	-0.8
2,018,921	-		GFF1999	0.17	-0.4
2,018,921	-		GFF1999	0.17	+0.3
2,018,921	-		GFF1999	0.17	+0.0
2,018,926	-		GFF1999	0.17	+0.2
2,018,926	-		GFF1999	0.17	+0.3
2,018,926	-		GFF1999	0.17	+0.2
2,018,926	-		GFF1999	0.17	-0.7
2,018,969	+		GFF1999	0.21	-0.3
2,018,972	-		GFF1999	0.21	-0.9
2,018,972	-		GFF1999	0.21	+0.9
2,018,982	-		GFF1999	0.22	+0.5
2,018,982	-		GFF1999	0.22	-1.3
2,018,983	+		GFF1999	0.22	+0.8
2,019,002	-		GFF1999	0.23	-0.3
2,019,005	+		GFF1999	0.24	-1.7
2,019,013	-		GFF1999	0.24	-0.3
2,019,013	-		GFF1999	0.24	-1.2
2,019,018	-		GFF1999	0.25	+1.6
2,019,022	+		GFF1999	0.25	-1.8
2,019,049	+		GFF1999	0.27	-0.2
2,019,049	+		GFF1999	0.27	-2.0
2,019,057	-		GFF1999	0.28	-0.0
2,019,057	-		GFF1999	0.28	-2.0
2,019,057	-		GFF1999	0.28	-1.4
2,019,057	-		GFF1999	0.28	+1.6
2,019,057	-		GFF1999	0.28	+0.8
2,019,059	-		GFF1999	0.28	+0.2
2,019,071	-		GFF1999	0.29	-0.4
2,019,115	+		GFF1999	0.33	-1.6
2,019,130	-		GFF1999	0.34	+0.4
2,019,142	+		GFF1999	0.35	+1.1
2,019,142	+		GFF1999	0.35	-0.5
2,019,152	+		GFF1999	0.36	-0.3
2,019,152	+		GFF1999	0.36	-1.6
2,019,160	-		GFF1999	0.37	-1.4
2,019,160	-		GFF1999	0.37	-0.6
2,019,160	-		GFF1999	0.37	-0.5
2,019,160	-		GFF1999	0.37	-2.5
2,019,160	-		GFF1999	0.37	-2.4
2,019,160	-		GFF1999	0.37	+1.3
2,019,160	-		GFF1999	0.37	+0.4
2,019,160	-		GFF1999	0.37	-2.1
2,019,160	-		GFF1999	0.37	-1.2
2,019,160	-		GFF1999	0.37	-1.0
2,019,243	+		GFF1999	0.44	+0.5
2,019,253	+		GFF1999	0.45	-0.1
2,019,260	+		GFF1999	0.45	-0.5
2,019,276	+		GFF1999	0.47	+1.3
2,019,276	+		GFF1999	0.47	-1.8
2,019,284	-		GFF1999	0.47	-0.6
2,019,284	-		GFF1999	0.47	+0.2
2,019,284	-		GFF1999	0.47	-0.4
2,019,284	-		GFF1999	0.47	+0.9
2,019,291	+		GFF1999	0.48	-1.2
2,019,347	+		GFF1999	0.53	-1.5
2,019,355	+		GFF1999	0.53	+0.4
2,019,355	-		GFF1999	0.53	+0.4
2,019,386	-		GFF1999	0.56	+0.4
2,019,485	-		GFF1999	0.65	+0.2
2,019,485	-		GFF1999	0.65	-1.2
2,019,491	-		GFF1999	0.65	+0.6
2,019,527	-		GFF1999	0.68	-0.6
2,019,544	-		GFF1999	0.70	-1.5
2,019,569	-		GFF1999	0.72	+0.3
2,019,580	-		GFF1999	0.73	+0.5
2,019,600	+		GFF1999	0.74	+0.3
2,019,608	-		GFF1999	0.75	-1.4
2,019,608	-		GFF1999	0.75	-2.2
2,019,631	+		GFF1999	0.77	-1.6
2,019,631	+		GFF1999	0.77	+0.5